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Benedetti M, De Castro F, Ciccarese A, Fanizzi FP. Is hydrogen electronegativity higher than Pauling’s value? New clues from the 13C and 29Si NMR chemical shifts of [CHF 3] and [SiHF 3] molecules. PURE APPL CHEM 2019. [DOI: 10.1515/pac-2019-0202] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
AbstractWe previously demonstrated that the δ NMR chemical shift of central NMR active atoms (A), in simple halido [AXn] (A=C, Si, Ge, Sn, Pb, Pt; Xn = combination of n halides, n = 4 or 6) derivatives, could be directly related to X radii overall sum, Σ(rL). Further correlation have also been observed for tetrahedral [AX4] (A=C, Si; X4 = combination of four halides) compounds where the X Pauling electronegativities sum,Σ(χLPau),$\Sigma (\chi _L^{{\rm{Pau}}}),$exceeds a specific value (≈12.4). In this work, we focused on these latter systems considering the H vs. X substitution. The analysis of the literature reported δ(13C) and δ(29Si) NMR chemical shift for the mono hydrogenated derivatives and in particular for [CHF3] and [SiHF3], characterized by the lowest Σ(rL) and the highestΣ(χLPau),$\Sigma (\chi _L^{{\rm{Pau}}}),$suggests a revised value for the H electronegativity ranking with respect to Pauling’s.
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Affiliation(s)
- Michele Benedetti
- Department of Biological and Environmental Sciences and Technologies (DiSTeBA) , University of Salento , Via Monteroni, I-73100 Lecce , Italy , Tel.: +39 0832299264, Fax: +39 0832 298626
| | - Federica De Castro
- Department of Biological and Environmental Sciences and Technologies (DiSTeBA) , University of Salento , Via Monteroni , I-73100 Lecce , Italy
| | - Antonella Ciccarese
- Department of Biological and Environmental Sciences and Technologies (DiSTeBA) , University of Salento , Via Monteroni , I-73100 Lecce , Italy
| | - Francesco Paolo Fanizzi
- Department of Biological and Environmental Sciences and Technologies (DiSTeBA) , University of Salento , Via Monteroni , I-73100 Lecce , Italy , Tel.: +39 0832299265, Fax: +39 0832 298626
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2
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Benedetti M, De Castro F, Fanizzi FP. Pauling Electronegativity On/Off Effects Assessed by 13C and 29Si NMR Spectroscopic Analysis. Chemistry 2017; 23:16877-16884. [DOI: 10.1002/chem.201703934] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2017] [Indexed: 11/08/2022]
Affiliation(s)
- Michele Benedetti
- Dipartimento di Scienze e Tecnologie Biologiche ed Ambientali; Università del Salento; Via Monteroni 73100 Lecce Italy
| | - Federica De Castro
- Dipartimento di Scienze e Tecnologie Biologiche ed Ambientali; Università del Salento; Via Monteroni 73100 Lecce Italy
| | - Francesco P. Fanizzi
- Dipartimento di Scienze e Tecnologie Biologiche ed Ambientali; Università del Salento; Via Monteroni 73100 Lecce Italy
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Krivdin LB. Calculation of 15N NMR chemical shifts: Recent advances and perspectives. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2017; 102-103:98-119. [PMID: 29157495 DOI: 10.1016/j.pnmrs.2017.08.001] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2017] [Revised: 08/21/2017] [Accepted: 08/21/2017] [Indexed: 06/07/2023]
Abstract
Recent advances in computation of 15N NMR chemical shifts are reviewed, concentrating mainly on practical aspects of computational protocols and accuracy factors. The review includes the discussion of the level of theory, the choice of density functionals and basis sets together with taking into account solvent effects, rovibrational corrections and relativistic effects. Computational aspects of 15N NMR are illustrated for the series of neutral and protonated open-chain nitrogen-containing compounds and nitrogen heterocycles, coordination and intermolecular complexes.
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Affiliation(s)
- Leonid B Krivdin
- A. E. Favorsky Irkutsk Institute of Chemistry, Siberian Branch of the Russian Academy of Sciences, Favorsky St. 1, 664033 Irkutsk, Russia.
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Benedetti M, De Castro F, Fanizzi FP. 73Ge, 119Sn and 207Pb: general cooperative effects of single atom ligands on the NMR signals observed in tetrahedral [MX nY 4-n] (M = Ge, Sn, Pb; 1 ≤ n ≤ 4; X, Y = Cl, Br, I) coordination compounds of heavier XIV group elements. Dalton Trans 2017; 46:2855-2860. [PMID: 28181618 DOI: 10.1039/c7dt00307b] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
An inverse linear relationship between 73Ge, 119Sn and 207Pb NMR chemical shifts and the overall sum of ionic radii of coordinated halido ligands has been discovered in tetrahedral [MXnY4-n] (M = Ge, Sn, Pb; 1 ≤ n ≤ 4; X, Y = Cl, Br, I) coordination compounds. This finding is consistent with a previously reported correlation found in octahedral, pentacoordinate and square planar platinum complexes. The effect of the coordinated halido ligands acting on the metal as shielding conducting rings is therefore confirmed also by 73Ge, 119Sn and 207Pb NMR spectroscopy.
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Affiliation(s)
- M Benedetti
- Dipartimento di Scienze e Tecnologie Biologiche ed Ambientali, Università del Salento, Via Monteroni, I-73100 Lecce, Italy.
| | - F De Castro
- Dipartimento di Scienze e Tecnologie Biologiche ed Ambientali, Università del Salento, Via Monteroni, I-73100 Lecce, Italy.
| | - F P Fanizzi
- Dipartimento di Scienze e Tecnologie Biologiche ed Ambientali, Università del Salento, Via Monteroni, I-73100 Lecce, Italy.
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Benedetti M, De Castro F, Ciccarese A, Fanizzi FP. NMR effective radius of hydrogen in XIV group hydrides evaluated by NMR spectroscopy. Dalton Trans 2017; 46:14094-14097. [DOI: 10.1039/c7dt03348f] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In the [ABrnIm] (A = C, Si, Ge, Sn; n + m = 4) compounds, with the heavier halido ligands bonded to the central IV group elements, the 13C, 29Si, 73Ge and 119Sn NMR chemical shifts were found to be linearly related to the bonded halides ionic radii overall sum, ∑(rh). The 207Pb NMR chemical shift of the unstable [PbH4] hydride could be calculated.
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Affiliation(s)
- M. Benedetti
- Dipartimento di Scienze e Tecnologie Biologiche ed Ambientali
- Università del Salento
- I-73100 Lecce
- Italy
| | - F. De Castro
- Dipartimento di Scienze e Tecnologie Biologiche ed Ambientali
- Università del Salento
- I-73100 Lecce
- Italy
| | - A. Ciccarese
- Dipartimento di Scienze e Tecnologie Biologiche ed Ambientali
- Università del Salento
- I-73100 Lecce
- Italy
| | - F. P. Fanizzi
- Dipartimento di Scienze e Tecnologie Biologiche ed Ambientali
- Università del Salento
- I-73100 Lecce
- Italy
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Aucar IA, Gomez SS, Giribet CG, Aucar GA. Toward an absolute NMR shielding scale using the spin-rotation tensor within a relativistic framework. Phys Chem Chem Phys 2016; 18:23572-86. [DOI: 10.1039/c6cp03355e] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
How can one extend Flygare's rule to the relativistic framework? Three models are proposed here. The best of them shows that σ is related with the spin-rotation tensor, the atomic shielding and a new term coined as σSO-S.
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Affiliation(s)
- I. Agustín Aucar
- Instituto de Modelado e Innovación Tecnológica
- CONICET
- and Departamento de Física – Facultad de Ciencias Exactas y Naturales
- UNNE
- Corrientes
| | - Sergio S. Gomez
- Instituto de Modelado e Innovación Tecnológica
- CONICET
- and Departamento de Física – Facultad de Ciencias Exactas y Naturales
- UNNE
- Corrientes
| | - Claudia G. Giribet
- Instituto de Física de Buenos Aires
- CONICET
- and Departamento de Física – Facultad de Ciencias Exactas y Naturales
- UBA
- Buenos Aires
| | - Gustavo A. Aucar
- Instituto de Modelado e Innovación Tecnológica
- CONICET
- and Departamento de Física – Facultad de Ciencias Exactas y Naturales
- UNNE
- Corrientes
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Maldonado AF, Melo JI, Aucar GA. Theoretical analysis of NMR shieldings of group-11 metal halides on MX (M = Cu, Ag, Au; X = H, F, Cl, Br, I) molecular systems, and the appearance of quasi instabilities on AuF. Phys Chem Chem Phys 2015; 17:25516-24. [PMID: 26364677 DOI: 10.1039/c5cp04215a] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Accurate calculations of nuclear magnetic shieldings of group-11 metal halides, σ(M; MX) (M = Cu, Ag, Au; X = H, F, Cl, Br, I), were performed with relativistic and nonrelativistic theoretical schemes in order to learn more about the importance of the involved electronic mechanisms that underlie such shieldings. We applied state of the art schemes: polarization propagators at a random phase level of approach (PP-RPA); spin-free Hamiltonian (SF); linear response elimination of small component (LRESC) and density functional theory (DFT) with two different functionals: B3LYP and PBE0. The results from DFT calculations are not close to those from the relativistic polarization propagator calculations at the RPA level of approach (RelPP-RPA), in line with previous results. The spin-orbit (SO) contribution to a shielding constant is important only for MF molecules (M = Cu, Ag, Au). Different electronic mechanisms are considered within the LRESC method, bunched into two groups: core- and ligand-dependent. For the analysed shieldings the core-dependent electronic mechanisms are the most important ones; the ligand-dependent being only important for MF molecules. An out of range value for σ(Au) is found in AuF. It was previously reported in the literature, either originated in the large fluorine electronegativity together with large spin-orbit coupling contributions; or, due to Fermi-contact contributions. We argue here that such an unexpected large value is an artifact originated in the appearance of quasi instabilities, and show how to handle this apparent problem.
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Affiliation(s)
- Alejandro F Maldonado
- Institute for Modelling and Innovative Technology, IMIT (CONICET-UNNE) and Physics Department - Natural and Exact Science Faculty, Northeastern University of Argentina, Avda Libertad 5460 W3404AAS, Corrientes, Argentina
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Maldonado AF, Aucar GA. Absolute value of the nuclear magnetic shielding of silicon and germanium atoms in Si/Ge(CH3)4. Chem Phys 2015. [DOI: 10.1016/j.chemphys.2015.08.018] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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9
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Fedorov SV, Rusakov YY, Krivdin LB. Relativistic Environmental Effects in 29Si NMR Chemical Shifts of Halosilanes: Light Nucleus, Heavy Environment. J Phys Chem A 2015; 119:5778-89. [DOI: 10.1021/acs.jpca.5b02337] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Sergey V. Fedorov
- A.E. Favorsky Irkutsk Institute
of Chemistry, Siberian Branch of the Russian Academy of Sciences, Favorsky St. 1, 664033 Irkutsk, Russia
| | - Yury Yu. Rusakov
- A.E. Favorsky Irkutsk Institute
of Chemistry, Siberian Branch of the Russian Academy of Sciences, Favorsky St. 1, 664033 Irkutsk, Russia
| | - Leonid B. Krivdin
- A.E. Favorsky Irkutsk Institute
of Chemistry, Siberian Branch of the Russian Academy of Sciences, Favorsky St. 1, 664033 Irkutsk, Russia
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10
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Vícha J, Foroutan-Nejad C, Pawlak T, Munzarová ML, Straka M, Marek R. Understanding the Electronic Factors Responsible for Ligand Spin–Orbit NMR Shielding in Transition-Metal Complexes. J Chem Theory Comput 2015; 11:1509-17. [DOI: 10.1021/ct501089z] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Jan Vícha
- CEITEC—Central
European Institute of Technology, Masaryk University, Kamenice
5/A4, CZ-62500 Brno, Czech Republic
| | - Cina Foroutan-Nejad
- CEITEC—Central
European Institute of Technology, Masaryk University, Kamenice
5/A4, CZ-62500 Brno, Czech Republic
- National
Center for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, CZ-62500 Brno, Czech Republic
| | - Tomasz Pawlak
- CEITEC—Central
European Institute of Technology, Masaryk University, Kamenice
5/A4, CZ-62500 Brno, Czech Republic
| | - Markéta L. Munzarová
- CEITEC—Central
European Institute of Technology, Masaryk University, Kamenice
5/A4, CZ-62500 Brno, Czech Republic
- Department
of Chemistry, Faculty of Science, Masaryk University, Kamenice
5, CZ-62500 Brno, Czech Republic
| | - Michal Straka
- CEITEC—Central
European Institute of Technology, Masaryk University, Kamenice
5/A4, CZ-62500 Brno, Czech Republic
- Institute of Organic Chemistry and Biochemistry of the ASCR, Flemingovo nám. 2, CZ-16610, Praha, Czech Republic
| | - Radek Marek
- CEITEC—Central
European Institute of Technology, Masaryk University, Kamenice
5/A4, CZ-62500 Brno, Czech Republic
- Department
of Chemistry, Faculty of Science, Masaryk University, Kamenice
5, CZ-62500 Brno, Czech Republic
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11
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Maldonado AF, Aucar GA. Relativistic and electron-correlation effects on the nuclear magnetic resonance shieldings of molecules containing tin and lead atoms. J Phys Chem A 2014; 118:7863-75. [PMID: 25110942 DOI: 10.1021/jp502543m] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The reference values for NMR magnetic shieldings, σ(ref), are of the highest importance when theoretical analysis of chemical shifts are envisaged. The fact that the nonrelativistically valid relationship among spin-rotation constants and magnetic shieldings is not any longer valid for heavy atoms requires that the search for σ(ref) for such atoms needs new strategies to follow. We present here results of σ(ref) that were obtained by applying our own simple procedure which mixes accurate experimental chemical shifts (δ) and theoretical magnetic shieldings (σ). We calculated σ(Sn) and σ(Pb) in a family of heavy-halogen-containing molecules. We found out that σ(ref)[Sn;Sn(CH3)4] in gas phase should be close to 3864.11 ± 20.05 ppm (0.5%). For Pb atom, σ(ref)[Pb;Pb(CH3)4] should be close to 14475.1 ± 500.7 ppm. Such theoretical values correspond to calculations with the relativistic polarization propagator method, RelPPA, at the RPA level of approach. They are closer to experimental values as compared to those obtained applying few different functionals such as PBE0, B3LYP, BLYP, BP86, KT2, and KT3 of the density functional theory, DFT. We studied tin and lead shieldings of the XY(4-n)Z(n) (X = Sn, Pb; Y, Z = H, F, Cl, Br, I) and PbH(4-n)I(n) (n = 0, 1, 2, 3, 4) family of compounds with four-component functionals as implemented in the DIRAC code. For these systems results of calculations with RelPPA-RPA are more reliable than DFT ones. We argue about why those DFT functionals must be modified in order to obtain more accurate results of NMR magnetic shieldings within the relativistic regime: first, there is a dependence among both electron-correlation and relativistic effects that should be introduced in some way in the functionals; and second, the DIRAC code uses standard nonrelativistic functionals and the functionals B3LYP and PBE0 were parametrized only with data taken from light elements. It can explain why they are not able to properly introduce relativistic effects on nuclear magnetic shieldings. We finally show that in the analysis of magnetic shieldings for the family of compounds mentioned above, one must consider the newest and so-called heavy-atom effect on vicinal heavy atoms, HAVHA. Such effects are among the most important relativistic effects in these kind of compounds.
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Affiliation(s)
- Alejandro F Maldonado
- Physics Department, Natural and Exact Science Faculty, Northeastern University of Argentina and Institute of Modelling and Innovation on Technology, IMIT , 3400 Corrientes, Argentina
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Maldonado AF, Aucar GA, Melo JI. Core-dependent and ligand-dependent relativistic corrections to the nuclear magnetic shieldings in MH4−n Y n (n = 0–4; M = Si, Ge, Sn, and Y = H, F, Cl, Br, I) model compounds. J Mol Model 2014; 20:2417. [DOI: 10.1007/s00894-014-2417-z] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2014] [Accepted: 08/04/2014] [Indexed: 11/24/2022]
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Autschbach J. Relativistic calculations of magnetic resonance parameters: background and some recent developments. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2014; 372:20120489. [PMID: 24516182 DOI: 10.1098/rsta.2012.0489] [Citation(s) in RCA: 51] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
This article outlines some basic concepts of relativistic quantum chemistry and recent developments of relativistic methods for the calculation of the molecular properties that define the basic parameters of magnetic resonance spectroscopic techniques, i.e. nuclear magnetic resonance shielding, indirect nuclear spin-spin coupling and electric field gradients (nuclear quadrupole coupling), as well as with electron paramagnetic resonance g-factors and electron-nucleus hyperfine coupling. Density functional theory (DFT) has been very successful in molecular property calculations, despite a number of problems related to approximations in the functionals. In particular, for heavy-element systems, the large electron count and the need for a relativistic treatment often render the application of correlated wave function ab initio methods impracticable. Selected applications of DFT in relativistic calculation of magnetic resonance parameters are reviewed.
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Affiliation(s)
- Jochen Autschbach
- Department of Chemistry, State University of New York at Buffalo, , Buffalo, NY 14260-3000, USA
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Melo JI, Maldonado AF, Aucar GA. Relativistic effects on nuclear magnetic shieldings of CHnX4−n and CHXYZ (X, Y, Z = H, F, Cl, Br, I). J Chem Phys 2012; 137:214319. [DOI: 10.1063/1.4768470] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Maldonado AF, Giménez CA, Aucar GA. Nuclear charge-distribution effects on the NMR spectroscopy parameters. J Chem Phys 2012; 136:224110. [DOI: 10.1063/1.4729253] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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