Spin labelling study of interfacial properties of egg-phosphatidylcholine liposomes as a function of cholesterol concentrations

Vibrational spectroscopy combined with molecular dynamics simulations as a tool for studying behavior of reactive aldehydes inserted in phospholipid bilayers

Vibrational Fourier-transform infrared (FTIR) spectroscopy aided with molecular dynamics (MD) simulations is used for studying the interaction of several reactive aldehydes (RAs), nonanal (NA), 2-nonenal (NE), 4-hydroxy-2-nonenal (HNE) and 4-oxo-2-nonenal (ONE), with 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC) bilayer. The results obtained by the combination of these two techniques, supported also by electron paramagnetic resonance (EPR) spectroscopy, show that NA has the strongest stabilization in the bilayer, followed by less stabilized NE, HNE and ONE. We also revealed that HNE readily makes hydrogen bonds to carbonyl groups of POPC (but not to phosphate groups), in contrast to other RAs which are hydrogen bond acceptors and do not make hydrogen bonds with lipids. A combination of FTIR spectroscopy and MD simulations is sensitive to small chemical changes in the structures of RAs, thus making it a valuable tool for studying the weak interactions between compounds inserted to phospholipid bilayers.

On the surface properties of oleate micelles and oleic acid/oleate vesicles studied by spin labeling

Dilute aqueous systems composed of sodium oleate micelles and sodium oleate/oleic acid vesicles were investigated as a function of pH by electron spin resonance spectroscopy with TEMPO-stearate TEMPO-stearamide as well as with a positively charged water soluble spin label, TEMPO-choline. The dynamics of the three TEMPO-spin labels were found to be sensitive to changes in the interfacial region of the aggregates as a function of pH. The results obtained are consistent with the formation of a hydrogen bond network (RCOO(-)↔HOOCR) at the surface of the sodium oleate/oleic acid system in the course of the transformation of micelles into the closed bilayers (vesicles). Vesicles formation below pH 10 was determined independently with a spin labeled glucose derivative.

Effects of macromolecular crowding on intracellular diffusion from a single particle perspective

Compared to biochemical reactions taking place in relatively well-defined aqueous solutions in vitro, the corresponding reactions happening in vivo occur in extremely complex environments containing only 60-70% water by volume, with the remainder consisting of an undefined array of bio-molecules. In a biological setting, such extremely complex and volume-occupied solution environments are termed 'crowded'. Through a range of intermolecular forces and pseudo-forces, this complex background environment may cause biochemical reactions to behave differently to their in vitro counterparts. In this review, we seek to highlight how the complex background environment of the cell can affect the diffusion of substances within it. Engaging the subject from the perspective of a single particle's motion, we place the focus of our review on two areas: (1) experimental procedures for conducting single particle tracking experiments within cells along with methods for extracting information from these experiments; (2) theoretical factors affecting the translational diffusion of single molecules within crowded two-dimensional membrane and three-dimensional solution environments. We conclude by discussing a number of recent publications relating to intracellular diffusion in light of the reviewed material.