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Báez-Grez R, Pino-Rios R. On the Importance of Noncovalent Interactions in the Stabilization of Nonconventional Compounds Using Bulky Groups. ACS OMEGA 2023; 8:23168-23173. [PMID: 37396283 PMCID: PMC10308520 DOI: 10.1021/acsomega.3c02663] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/18/2023] [Accepted: 06/01/2023] [Indexed: 07/04/2023]
Abstract
In this article, we studied the capability of bulky groups to contribute to the stabilization of a given compound in addition to the well-known steric effect related to substituents due to their composition (alkyl chains and aromatic groups, among others). For this purpose, the recently synthesized 1-bora-3-boratabenzene anion which contains large substituents was analyzed by means of the independent gradient model (IGM), natural population analysis (NPA) at the TPSS/def2-TZVP level, force field-based energy decomposition analysis (EDA-FF) applying the universal force field (UFF), and molecular dynamics calculations under the GFN2-xTB approach. The results indicate that the bulky groups should not only be considered for their steric effects but also for their ability to stabilize a system that could be very reactive.
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Affiliation(s)
- Rodrigo Báez-Grez
- Computational
and Theoretical Chemistry Group, Departamento de Ciencias Químicas,
Facultad de Ciencias Exactas, Universidad
Andres Bello, República 275, 8370146 Santiago, Chile
| | - Ricardo Pino-Rios
- Química
y Farmacia, Facultad de Ciencias de la Salud, Universidad Arturo Prat., Casilla 121, Iquique 1100000, Chile
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2
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de la Cruz C, Sanz R, Suárez A, Ventosa E, Marcilla R, Mavrandonakis A. A Systematic Study on the Redox Potentials of Phenazine-Derivatives in Aqueous Media: A Combined Computational and Experimental Work. CHEMSUSCHEM 2023; 16:e202201984. [PMID: 36753400 DOI: 10.1002/cssc.202201984] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2022] [Revised: 01/30/2023] [Indexed: 06/18/2023]
Abstract
Phenazines are an emerging class of organic compounds that have been recently utilized in aqueous redox flow batteries, a promising technology for large-scale energy storage. A virtual screening based on density functional theory calculations is used to investigate the redox potentials of around 100 phenazine derivatives in aqueous media containing various electron-donating or electron-withdrawing groups at different positions. The calculations identify the crucial positions that should be functionalized with multiple hydroxy groups to design new anolytes. The combined experimental-computational methodology reported herein guides the development of a new molecule with a record low reversible redox potential as a potential anolyte for aqueous redox flow batteries.
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Affiliation(s)
- Carlos de la Cruz
- Electrochemical Processes Unit, IMDEA Energy, Avenida Ramón de la Sagra 3, 28935, Móstoles, Spain
| | - Roberto Sanz
- Department of Chemistry, University of Burgos, Pza. Misael Bañuelos s/n, Burgos, E-09001, Spain
| | - Anisley Suárez
- Department of Chemistry, University of Burgos, Pza. Misael Bañuelos s/n, Burgos, E-09001, Spain
| | - Edgar Ventosa
- Department of Chemistry, University of Burgos, Pza. Misael Bañuelos s/n, Burgos, E-09001, Spain
| | - Rebeca Marcilla
- Electrochemical Processes Unit, IMDEA Energy, Avenida Ramón de la Sagra 3, 28935, Móstoles, Spain
| | - Andreas Mavrandonakis
- Electrochemical Processes Unit, IMDEA Energy, Avenida Ramón de la Sagra 3, 28935, Móstoles, Spain
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3
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Yabalak E, Akay S, Kayan B, Gizir AM, Yang Y. Solubility and Decomposition of Organic Compounds in Subcritical Water. Molecules 2023; 28:molecules28031000. [PMID: 36770670 PMCID: PMC9920662 DOI: 10.3390/molecules28031000] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2022] [Revised: 01/15/2023] [Accepted: 01/16/2023] [Indexed: 01/20/2023] Open
Abstract
In this article, studies on organic solubility and stability in subcritical water reported during the past 25 years have been reviewed. Data on the solubility and decomposition of organic compounds in subcritical water, a green solvent, are needed in environmental remediation, chemistry, chemical engineering, medicine, polymer, food, agriculture, and many other fields. For solubility studies, the experimental systems used to measure solubility, mathematical equations derived and applied for the modeling of the experimentally determined solubility data, and the correlation between the predicated and experimental data have been summarized and discussed. This paper also reviewed organic decomposition under subcritical water conditions. In general, the solubility of organics is significantly enhanced with increasing water temperature. Likewise, the percentage of organic decomposition also increases with higher temperature.
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Affiliation(s)
- Erdal Yabalak
- Department of Nanotechnology and Advanced Materials, Mersin University, 33343 Mersin, Turkey
| | - Sema Akay
- Department of Chemistry, Arts & Science Faculty, Aksaray University, 68100 Aksaray, Turkey
| | - Berkant Kayan
- Department of Chemistry, Arts & Science Faculty, Aksaray University, 68100 Aksaray, Turkey
| | - A. Murat Gizir
- Department of Chemistry, Faculty of Science, Mersin University, 33342 Mersin, Turkey
- Correspondence: (A.M.G.); (Y.Y.)
| | - Yu Yang
- Department of Chemistry, East Carolina University, Greenville, NC 27858, USA
- Correspondence: (A.M.G.); (Y.Y.)
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Vermeire FH, Chung Y, Green WH. Predicting Solubility Limits of Organic Solutes for a Wide Range of Solvents and Temperatures. J Am Chem Soc 2022; 144:10785-10797. [PMID: 35687887 DOI: 10.1021/jacs.2c01768] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
The solubility of organic molecules is crucial in organic synthesis and industrial chemistry; it is important in the design of many phase separation and purification units, and it controls the migration of many species into the environment. To decide which solvents and temperatures can be used in the design of new processes, trial and error is often used, as the choice is restricted by unknown solid solubility limits. Here, we present a fast and convenient computational method for estimating the solubility of solid neutral organic molecules in water and many organic solvents for a broad range of temperatures. The model is developed by combining fundamental thermodynamic equations with machine learning models for solvation free energy, solvation enthalpy, Abraham solute parameters, and aqueous solid solubility at 298 K. We provide free open-source and online tools for the prediction of solid solubility limits and a curated data collection (SolProp) that includes more than 5000 experimental solid solubility values for validation of the model. The model predictions are accurate for aqueous systems and for a huge range of organic solvents up to 550 K or higher. Methods to further improve solid solubility predictions by providing experimental data on the solute of interest in another solvent, or on the solute's sublimation enthalpy, are also presented.
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Affiliation(s)
- Florence H Vermeire
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Yunsie Chung
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - William H Green
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
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5
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Prediction the Solubility of Polycyclic Aromatic Hydrocarbons in Subcritical Water by Using the CPA EOS. J SOLUTION CHEM 2017. [DOI: 10.1007/s10953-017-0690-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Abstract
1. Thianthrene is a sulfur-containing tricyclic molecule distributed widely within the macrostructure of hydrocarbon fossil fuels. Identified nearly 150 years ago, its chemistry has been widely explored leading to insights into reaction mechanisms and radical ion formation. 2. It has been claimed to have therapeutic application in the treatment of dermal infections and to interfere with enzyme and nucleic acid function, but appears to have little toxicity. 3. Following its oral administration to the rat, the majority remained within the gastrointestinal tract. After three days, about 88% was detected in the combined excreta with the remainder still within the animal. It is readily taken up into fish from the surrounding aqueous environment and has been placed within the "bioaccumulative category" to be regarded with concern. 4. Mammalian metabolism appeared to be restricted to ring carbon oxidation and subsequent glucuronic acid conjugation. Small amounts of sulfoxide and disulfoxide were also formed. No ring degradation was evident. Microorganisms similarly undertook aromatic ring hydroxylation but were able also to rupture the ring system by attacking the carbon-sulfur linkages and thereby degrading the molecule.
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Affiliation(s)
- Steve C Mitchell
- a Computational and Systems Medicine, Imperial College London , London , UK and
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Khanjari Y, Eikani MH, Rowshanzamir S. Experimental and theoretical investigation of the removal organic pollutants from contaminated soils using superheated water. J Supercrit Fluids 2015. [DOI: 10.1016/j.supflu.2015.04.010] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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8
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Shayanfar A, Asadpour-Zeynali K, Jouyban A. Solubility and dissolution rate of a carbamazepine–cinnamic acid cocrystal. J Mol Liq 2013. [DOI: 10.1016/j.molliq.2013.06.015] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
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9
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Alvarez VH, Saldaña MDA. Modeling Solubility of Polycyclic Aromatic Compounds in Subcritical Water. Ind Eng Chem Res 2011. [DOI: 10.1021/ie201019b] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Víctor H. Alvarez
- Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, Alberta, Canada, T6G 2P5
| | - Marleny D. A. Saldaña
- Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, Alberta, Canada, T6G 2P5
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Karásek P, Planeta J, Roth M. Group Contribution Correlation for Aqueous Solubilities of Solid Aromatics, Heterocycles, and Diamondoids over a 200 K Temperature Interval. Ind Eng Chem Res 2010. [DOI: 10.1021/ie901348d] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Pavel Karásek
- Institute of Analytical Chemistry of the ASCR, v. v. i., Veveří 97, 60200 Brno, Czech Republic
| | - Josef Planeta
- Institute of Analytical Chemistry of the ASCR, v. v. i., Veveří 97, 60200 Brno, Czech Republic
| | - Michal Roth
- Institute of Analytical Chemistry of the ASCR, v. v. i., Veveří 97, 60200 Brno, Czech Republic
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Teo CC, Tan SN, Yong JWH, Hew CS, Ong ES. Pressurized hot water extraction (PHWE). J Chromatogr A 2010; 1217:2484-94. [PMID: 20060531 DOI: 10.1016/j.chroma.2009.12.050] [Citation(s) in RCA: 264] [Impact Index Per Article: 18.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2009] [Revised: 12/16/2009] [Accepted: 12/21/2009] [Indexed: 02/07/2023]
Abstract
Pressurized hot water extraction (PHWE) has become a popular green extraction method for different classes of compounds present in numerous kinds of matrices such as environmental, food and botanical samples. PHWE is also used in sample preparation to extract organic contaminants from foodstuff for food safety analysis and soils/sediments for environmental monitoring purposes. The main parameters which influence its extraction efficiency are namely the temperature, extraction time, flow rates and addition of modifiers/additives. Among these different parameters studied, temperature is described as the most important one. It is reported that the extraction of certain compounds is rather dependent on pressurized water with different applied temperature. Thus, the stability and reduced solubilities of certain compounds at elevated temperatures are highlighted in this review. With some modifications, a scaled-up PHWE could extract a higher amount of desirable compounds from solid and powdered samples such as plant and food materials. The PHWE extracts from plants are rich in chemical compounds or metabolites which can be a potential lead for drug discovery or development of disease-resistant food crops.
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Affiliation(s)
- Chin Chye Teo
- Natural Sciences and Science Education Academic Group, Nanyang Technological University, 1 Nanyang Walk, Singapore 637616, Singapore
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12
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Oliveira MB, Oliveira VL, Coutinho JAP, Queimada AJ. Thermodynamic Modeling of the Aqueous Solubility of PAHs. Ind Eng Chem Res 2009. [DOI: 10.1021/ie900011g] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Mariana B. Oliveira
- CICECO, Chemistry Department, University of Aveiro, 3810-193 Aveiro, Portugal
| | - Vera L. Oliveira
- CICECO, Chemistry Department, University of Aveiro, 3810-193 Aveiro, Portugal
| | - João A. P. Coutinho
- CICECO, Chemistry Department, University of Aveiro, 3810-193 Aveiro, Portugal
| | - António J. Queimada
- LSRE—Laboratory of Separation and Reaction Engineering, Faculdade de Engenharia, Universidade do Porto, Rua do Doutor Roberto Frias, 4200-465 Porto, Portugal
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Teo CC, Tan SN, Yong JWH, Hew CS, Ong ES. Validation of green-solvent extraction combined with chromatographic chemical fingerprint to evaluate quality ofStevia rebaudianaBertoni. J Sep Sci 2009; 32:613-22. [DOI: 10.1002/jssc.200800552] [Citation(s) in RCA: 57] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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14
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Critical review on recent developments in solventless techniques for extraction of analytes. Anal Bioanal Chem 2008; 393:809-33. [DOI: 10.1007/s00216-008-2437-6] [Citation(s) in RCA: 189] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2008] [Accepted: 09/24/2008] [Indexed: 10/21/2022]
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15
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Fornari T, Stateva RP, Señorans FJ, Reglero G, Ibañez E. Applying UNIFAC-based models to predict the solubility of solids in subcritical water. J Supercrit Fluids 2008. [DOI: 10.1016/j.supflu.2007.11.017] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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16
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Teo CC, Tan SN, Yong JWH, Hew CS, Ong ES. Evaluation of the extraction efficiency of thermally labile bioactive compounds in Gastrodia elata Blume by pressurized hot water extraction and microwave-assisted extraction. J Chromatogr A 2008; 1182:34-40. [DOI: 10.1016/j.chroma.2008.01.011] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2007] [Revised: 01/01/2008] [Accepted: 01/03/2008] [Indexed: 10/22/2022]
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17
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Karásek P, Planeta J, Roth M. Simple First-Order Group Contribution Scheme for Solubilities of Solid Polycyclic Aromatic Hydrocarbons and Solid Polycyclic Aromatic Heterocycles in Pressurized Hot Water. Ind Eng Chem Res 2007. [DOI: 10.1021/ie070572t] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Pavel Karásek
- Institute of Analytical Chemistry, Academy of Sciences of the Czech Republic, Veveří 97, 60200 Brno, Czech Republic
| | - Josef Planeta
- Institute of Analytical Chemistry, Academy of Sciences of the Czech Republic, Veveří 97, 60200 Brno, Czech Republic
| | - Michal Roth
- Institute of Analytical Chemistry, Academy of Sciences of the Czech Republic, Veveří 97, 60200 Brno, Czech Republic
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