Detection and use of selective ions for providing initial estimates of the concentration vectors in iterative target transformation factor analysis

Exploring the relationship between 5'AMP-activated protein kinase and markers related to type 2 diabetes mellitus

The importance of 5'AMP-activated protein kinase (AMPK) in regulating glucose and fatty acid metabolism is increasing. Thus, it is regarded as a new pharmacological target for treatment of obesity, insulin resistance and type 2 diabetes mellitus (T2DM). In order to explore the relationships between AMPK and diabetes mellitus, urines samples from four groups of C57 mice, i.e., the normal male and female C57 mice, female C57-AMPK gene knocked-out mice, and male C57-AMPK gene knocked-out mice, were studied by coupling GC/MS with a powerful machine learning method, random forest. The experimentation has been designed as two steps: firstly, the normal male and female mice were compared with male and female C57-AMPK gene knocked-out mice, respectively; then the differences between male C57-AMPK gene knocked-out mice and female C57-AMPK gene knocked-out mice were further detected. Finally, not only the differences between the normal C57 mice and C57-AMPK gene knocked-out mice were observed, but also the gender-related metabolites differences of the C57-AMPK gene knocked-out mice were obviously visualized. The results obtained with this research demonstrate that combining GC/MS profiling with random forest is a useful approach to analyze metabolites and to screen the potential biomarkers for exploring the relationships between AMPK and diabetes mellitus.

Resolving co-eluting chromatographic patterns by means of dissimilarity analysis in iterative target transformation factor analysis

The initialization of concentration vector for iterative target transformation factor analysis (ITTFA) and identification of pure or key variables are the important issue in MCR. In this study, dissimilarity analysis and evolving factor analysis (EFA) are combined to find the selective or key variables and subsequently obtain initial estimates of the concentration vectors for resolution of gas chromatography/mass spectrometry (GC/MS) data by ITTFA. For systems containing components with highly similar mass spectra, a new constraint setting the elements out of elution window to 0 is used to improve convergence rate and accuracy of results. Tested by standard mixture of two wax esters and real GC/MS data of gasoline 97#, dissimilarity based ITTFA could obtain accurate results (average Dot product of concentration vectors, average deviation of peak area ratio and average similarity of mass spectra are 0.9929, 0.0228 and 981.0, respectively).