1
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Analyzing chromatographic data using multilevel modeling. Anal Bioanal Chem 2018; 410:3905-3915. [DOI: 10.1007/s00216-018-1061-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2017] [Revised: 03/20/2018] [Accepted: 04/03/2018] [Indexed: 11/26/2022]
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2
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Wiczling P. Evaluation of sequential Bayesian-based method development procedures for chromatographic problems involving one, two, and three analytes. SEPARATION SCIENCE PLUS 2018. [DOI: 10.1002/sscp.201700037] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Paweł Wiczling
- Department of Biopharmaceutics and Pharmacodynamics; Medical University of Gdańsk; Gdańsk Poland
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3
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Liu G, Wang P, Li C, Wang J, Sun Z, Zhao X, Zheng X. Confirming therapeutic target of protopine using immobilized β 2 -adrenoceptor coupled with site-directed molecular docking and the target-drug interaction by frontal analysis and injection amount-dependent method. J Mol Recognit 2017; 30. [PMID: 28124461 DOI: 10.1002/jmr.2613] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2016] [Revised: 12/17/2016] [Accepted: 01/03/2017] [Indexed: 11/09/2022]
Abstract
Drug-protein interaction analysis is pregnant in designing new leads during drug discovery. We prepared the stationary phase containing immobilized β2 -adrenoceptor (β2 -AR) by linkage of the receptor on macroporous silica gel surface through N,N'-carbonyldiimidazole method. The stationary phase was applied in identifying antiasthmatic target of protopine guided by the prediction of site-directed molecular docking. Subsequent application of immobilized β2 -AR in exploring the binding of protopine to the receptor was realized by frontal analysis and injection amount-dependent method. The association constants of protopine to β2 -AR by the 2 methods were (1.00 ± 0.06) × 105 M-1 and (1.52 ± 0.14) × 104 M-1 . The numbers of binding sites were (1.23 ± 0.07) × 10-7 M and (9.09 ± 0.06) × 10-7 M, respectively. These results indicated that β2 -AR is the specific target for therapeutic action of protopine in vivo. The target-drug binding occurred on Ser169 in crystal structure of the receptor. Compared with frontal analysis, injection amount-dependent method is advantageous to drug saving, improvement of sampling efficiency, and performing speed. It has grave potential in high-throughput drug-receptor interaction analysis.
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Affiliation(s)
- Guangxin Liu
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, College of Life Sciences, Northwest University, Xi'an, China
| | - Pei Wang
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, College of Life Sciences, Northwest University, Xi'an, China
| | - Chan Li
- Drug Certificate Center, Shaanxi Food and Drug Administration, Xi'an, China
| | - Jing Wang
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, College of Life Sciences, Northwest University, Xi'an, China
| | - Zhenyu Sun
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, College of Life Sciences, Northwest University, Xi'an, China
| | - Xinfeng Zhao
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, College of Life Sciences, Northwest University, Xi'an, China
| | - Xiaohui Zheng
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, College of Life Sciences, Northwest University, Xi'an, China
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4
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Pre-column dilution large volume injection ultra-high performance liquid chromatography-tandem mass spectrometry for the analysis of multi-class pesticides in cabbages. J Chromatogr A 2016; 1442:53-61. [DOI: 10.1016/j.chroma.2016.03.010] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2015] [Revised: 02/26/2016] [Accepted: 03/06/2016] [Indexed: 01/14/2023]
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5
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Wiczling P, Kaliszan R. How Much Can We Learn from a Single Chromatographic Experiment? A Bayesian Perspective. Anal Chem 2015; 88:997-1002. [DOI: 10.1021/acs.analchem.5b03859] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Paweł Wiczling
- Department
of Biopharmaceutics
and Pharmacodynamics, Medical University of Gdańsk, Gen.
J. Hallera 107, 80-416 Gdańsk, Poland
| | - Roman Kaliszan
- Department
of Biopharmaceutics
and Pharmacodynamics, Medical University of Gdańsk, Gen.
J. Hallera 107, 80-416 Gdańsk, Poland
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6
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Sykora D, Vozka J, Tesarova E. Chromatographic methods enabling the characterization of stationary phases and retention prediction in high-performance liquid chromatography and supercritical fluid chromatography. J Sep Sci 2015; 39:115-31. [DOI: 10.1002/jssc.201501023] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2015] [Revised: 10/08/2015] [Accepted: 10/08/2015] [Indexed: 11/11/2022]
Affiliation(s)
- David Sykora
- Department of Analytical Chemistry; University of Chemistry and Technology; Prague Czech Republic
| | - Jiri Vozka
- Department of Analytical Chemistry; University of Chemistry and Technology; Prague Czech Republic
- Department of Physical and Macromolecular Chemistry, Faculty of Science; Charles University in Prague; Prague Czech Republic
| | - Eva Tesarova
- Department of Physical and Macromolecular Chemistry, Faculty of Science; Charles University in Prague; Prague Czech Republic
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7
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Kubik Ł, Struck-Lewicka W, Kaliszan R, Wiczling P. Simultaneous determination of hydrophobicity and dissociation constant for a large set of compounds by gradient reverse phase high performance liquid chromatography–mass spectrometry technique. J Chromatogr A 2015; 1416:31-7. [DOI: 10.1016/j.chroma.2015.09.003] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2015] [Revised: 09/01/2015] [Accepted: 09/02/2015] [Indexed: 10/23/2022]
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8
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Wiczling P, Kubik Ł, Kaliszan R. Maximum A Posteriori Bayesian Estimation of Chromatographic Parameters by Limited Number of Experiments. Anal Chem 2015; 87:7241-9. [DOI: 10.1021/acs.analchem.5b01195] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Paweł Wiczling
- Department of Biopharmaceutics
and Pharmacodynamics, Medical University of Gdańsk, Gen.
J. Hallera 107, 80-416 Gdańsk, Poland
| | - Łukasz Kubik
- Department of Biopharmaceutics
and Pharmacodynamics, Medical University of Gdańsk, Gen.
J. Hallera 107, 80-416 Gdańsk, Poland
| | - Roman Kaliszan
- Department of Biopharmaceutics
and Pharmacodynamics, Medical University of Gdańsk, Gen.
J. Hallera 107, 80-416 Gdańsk, Poland
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9
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Wiczling P, Struck-Lewicka W, Kubik Ł, Siluk D, Markuszewski M, Kaliszan R. The simultaneous determination of hydrophobicity and dissociation constant by liquid chromatography–mass spectrometry. J Pharm Biomed Anal 2014; 94:180-7. [DOI: 10.1016/j.jpba.2014.01.038] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2013] [Accepted: 01/23/2014] [Indexed: 11/16/2022]
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10
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Zisi C, Fasoula S, Pappa-Louisi A, Nikitas P. Expressions for Multilinear Combined pH/Organic Solvent Elution of Ionizable Analytes in Reversed-Phase HPLC. Anal Chem 2013; 85:9514-21. [DOI: 10.1021/ac4021243] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Ch. Zisi
- Laboratory
of Physical Chemistry,
Department of Chemistry, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece
| | - S. Fasoula
- Laboratory
of Physical Chemistry,
Department of Chemistry, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece
| | - A. Pappa-Louisi
- Laboratory
of Physical Chemistry,
Department of Chemistry, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece
| | - P. Nikitas
- Laboratory
of Physical Chemistry,
Department of Chemistry, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece
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11
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Fasoula S, Zisi C, Nikitas P, Pappa-Louisi A. Retention prediction and separation optimization of ionizable analytes in reversed-phase liquid chromatography by organic modifier gradients in different eluent pHs. J Chromatogr A 2013; 1305:131-8. [DOI: 10.1016/j.chroma.2013.07.009] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2013] [Revised: 07/02/2013] [Accepted: 07/03/2013] [Indexed: 11/15/2022]
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12
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Zisi C, Fasoula S, Nikitas P, Pappa-Louisi A. Retention modeling in combined pH/organic solvent gradient reversed-phase HPLC. Analyst 2013; 138:3771-7. [DOI: 10.1039/c3an36425a] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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13
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Wiczling P, Nasal A, Kubik Ł, Kaliszan R. A new pH/organic modifier gradient RP HPLC method for convenient determination of lipophilicity and acidity of drugs as applied to established imidazoline agents. Eur J Pharm Sci 2012; 47:1-5. [DOI: 10.1016/j.ejps.2012.04.021] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2012] [Revised: 04/25/2012] [Accepted: 04/26/2012] [Indexed: 10/28/2022]
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14
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Nikitas P, Pappa-Louisi A, Zisi C. pH-Gradient Reversed-Phase Liquid Chromatography of Ionogenic Analytes Revisited. Anal Chem 2012; 84:6611-8. [DOI: 10.1021/ac300876c] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- P. Nikitas
- Laboratory of Physical Chemistry, Department
of Chemistry, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece
| | - A. Pappa-Louisi
- Laboratory of Physical Chemistry, Department
of Chemistry, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece
| | - Ch. Zisi
- Laboratory of Physical Chemistry, Department
of Chemistry, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece
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15
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Andrés A, Téllez A, Rosés M, Bosch E. Chromatographic models to predict the elution of ionizable analytes by organic modifier gradient in reversed phase liquid chromatography. J Chromatogr A 2012; 1247:71-80. [DOI: 10.1016/j.chroma.2012.05.070] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2012] [Revised: 05/21/2012] [Accepted: 05/22/2012] [Indexed: 11/30/2022]
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16
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Di Tullio M, Maccallini C, Ammazzalorso A, Giampietro L, Amoroso R, De Filippis B, Fantacuzzi M, Wiczling P, Kaliszan R. QSAR, QSPR and QSRR in Terms of 3-D-MoRSE Descriptors for In Silico Screening of Clofibric Acid Analogues. Mol Inform 2012; 31:453-8. [DOI: 10.1002/minf.201200001] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2012] [Accepted: 05/10/2012] [Indexed: 11/07/2022]
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17
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Hirsh AG, Tsonev LI. Multiple, simultaneous, independent gradients for versatile multidimensional liquid chromatography. Part I: Theory. J Chromatogr A 2012; 1236:51-62. [DOI: 10.1016/j.chroma.2012.02.072] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2011] [Revised: 02/21/2012] [Accepted: 02/26/2012] [Indexed: 10/28/2022]
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18
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Pappa-Louisi A, Zisi C. A simple approach for retention prediction in the pH-gradient reversed-phase liquid chromatography. Talanta 2012; 93:279-84. [PMID: 22483911 DOI: 10.1016/j.talanta.2012.02.034] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2011] [Revised: 02/10/2012] [Accepted: 02/16/2012] [Indexed: 10/28/2022]
Abstract
A simple approach for retention modeling of solutes under pH-gradient conditions at various organic contents in the mobile phase is proposed. This approach is based on a retention model arising from the evaluation of the retention data of a set of 17 OPA derivatives of amino acids obtained in two series of 22 pH-gradient runs performed between a given initial and final pH value (between 2.8 and 10.7 or 3.2 and 9.0) with different gradient duration and with different organic modifier content in the eluent. The derived model is a fifth-parameter equation easily manageable through a linear least-squares fitting. It requires only 6 initial pH-gradient experiments, allows a very satisfactory prediction for various pH-changes of the same kind with those used in the fitting procedure and seems to be very promising in separation optimization under pH-gradient conditions. The pH-gradient method appears to be especially suitable and effective for separation of amino acid derivatives whereas the application of pH-gradients from 3.2 to 9.0 proved to be beneficial.
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Affiliation(s)
- A Pappa-Louisi
- Laboratory of Physical Chemistry, Department of Chemistry, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece.
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19
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Kaliszan R, Wiczling P. Gradient reversed-phase high-performance chromatography of ionogenic analytes. Trends Analyt Chem 2011. [DOI: 10.1016/j.trac.2011.05.006] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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