1
|
Zhou W, Wang X, Liu Y, Zhang W, Di X. Novel Cu2+-based immobilized metal affinity magnetic nanoparticles for fast magnetic solid-phase extraction of trace Sudan dyes in food samples. Food Chem 2022; 404:134432. [DOI: 10.1016/j.foodchem.2022.134432] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2022] [Revised: 09/20/2022] [Accepted: 09/26/2022] [Indexed: 10/14/2022]
|
2
|
Capriotti AL, Cavaliere C, Ferraris F, Gianotti V, Laus M, Piovesana S, Sparnacci K, Zenezini Chiozzi R, Laganà A. New Ti-IMAC magnetic polymeric nanoparticles for phosphopeptide enrichment from complex real samples. Talanta 2018; 178:274-281. [DOI: 10.1016/j.talanta.2017.09.010] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2017] [Revised: 08/30/2017] [Accepted: 09/04/2017] [Indexed: 12/22/2022]
|
3
|
La Barbera G, Capriotti AL, Cavaliere C, Ferraris F, Laus M, Piovesana S, Sparnacci K, Laganà A. Development of an enrichment method for endogenous phosphopeptide characterization in human serum. Anal Bioanal Chem 2018; 410:1177-1185. [DOI: 10.1007/s00216-017-0822-8] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2017] [Revised: 12/05/2017] [Accepted: 12/08/2017] [Indexed: 12/15/2022]
|
4
|
Piovesana S, Capriotti AL, Cavaliere C, Ferraris F, Iglesias D, Marchesan S, Laganà A. New Magnetic Graphitized Carbon Black TiO2 Composite for Phosphopeptide Selective Enrichment in Shotgun Phosphoproteomics. Anal Chem 2016; 88:12043-12050. [DOI: 10.1021/acs.analchem.6b02345] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Susy Piovesana
- Dipartimento
di Chimica, Sapienza Università di Roma, Piazzale Aldo Moro 5, 00185 Rome, Italy
| | - Anna Laura Capriotti
- Dipartimento
di Chimica, Sapienza Università di Roma, Piazzale Aldo Moro 5, 00185 Rome, Italy
| | - Chiara Cavaliere
- Dipartimento
di Chimica, Sapienza Università di Roma, Piazzale Aldo Moro 5, 00185 Rome, Italy
| | - Francesca Ferraris
- Dipartimento
di Chimica, Sapienza Università di Roma, Piazzale Aldo Moro 5, 00185 Rome, Italy
| | - Daniel Iglesias
- Dipartimento
di Scienze Chimiche e Farmaceutiche, Università di Trieste, Via L. Giorgieri
1, 34127 Trieste, Italy
| | - Silvia Marchesan
- Dipartimento
di Scienze Chimiche e Farmaceutiche, Università di Trieste, Via L. Giorgieri
1, 34127 Trieste, Italy
| | - Aldo Laganà
- Dipartimento
di Chimica, Sapienza Università di Roma, Piazzale Aldo Moro 5, 00185 Rome, Italy
| |
Collapse
|
5
|
Phosphopeptide enrichment: Development of magnetic solid phase extraction method based on polydopamine coating and Ti4+-IMAC. Anal Chim Acta 2016; 909:67-74. [DOI: 10.1016/j.aca.2016.01.008] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2015] [Revised: 12/18/2015] [Accepted: 01/02/2016] [Indexed: 11/19/2022]
|
6
|
Batalha ÍL, Roque ACA. Phosphopeptide Enrichment Using Various Magnetic Nanocomposites: An Overview. Methods Mol Biol 2016; 1355:193-209. [PMID: 26584927 DOI: 10.1007/978-1-4939-3049-4_13] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Magnetic nanocomposites are hybrid structures consisting of an iron oxide (Fe3O4/γ-Fe2O3) superparamagnetic core and a coating shell which presents affinity for a specific target molecule. Within the scope of phosphopeptide enrichment, the magnetic core is usually first functionalized with an intermediate layer of silica or carbon to improve dispersibility and increase specific area, and then with an outer layer of a phosphate-affinity material. Fe3O4-coating materials include metal oxides, rare earth metal-based compounds, immobilized-metal ions, polymers, and many others. This chapter provides a generic overview of the different materials that can be found in literature and their advantages and drawbacks.
Collapse
Affiliation(s)
- Íris L Batalha
- UCIBIO, REQUIMTE, Departamento de Química, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516, Caparica, Portugal.
- Department of Chemical Engineering and Biotechnology, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QT, UK.
| | - Ana Cecília A Roque
- UCIBIO, REQUIMTE, Departamento de Química, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516, Caparica, Portugal
| |
Collapse
|
7
|
Mitulović G. New HPLC Techniques for Proteomics Analysis: A Short Overview of Latest Developments. J LIQ CHROMATOGR R T 2014. [DOI: 10.1080/10826076.2014.941266] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Affiliation(s)
- Goran Mitulović
- a Clinical Institute of Laboratory Medicine and Proteomics Core Facility , Medical University of Vienna , Wien , Austria
| |
Collapse
|
8
|
Zhao M, Xie Y, Deng C, Zhang X. Recent advances in the application of core–shell structured magnetic materials for the separation and enrichment of proteins and peptides. J Chromatogr A 2014; 1357:182-93. [DOI: 10.1016/j.chroma.2014.04.078] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2014] [Revised: 04/20/2014] [Accepted: 04/22/2014] [Indexed: 12/28/2022]
|
9
|
Najam-ul-Haq M, Saeed A, Jabeen F, Maya F, Ashiq MN, Sharif A. Newly developed poly(allyl glycidyl ether/divinyl benzene) polymer for phosphopeptides enrichment and desalting of biofluids. ACS APPLIED MATERIALS & INTERFACES 2014; 6:3536-3545. [PMID: 24533437 DOI: 10.1021/am405718j] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
The polymeric materials have contributed significantly in the area of bioanalytical science. The functionalization of polymeric backbone after its development brings unique selectivity towards the target biomolecules. In present work, the functionalities of choice have been introduced through the ring-opening of allyl glycidyl ether. The utility of polymer is widened through derivatizations to immobilized metal ion affinity chromatographic (IMAC) material for the phosphopeptides enrichment and Reversed Phase (C-18) for the desalting prior to MALDI-MS analysis. The polymer-IMAC in addition to Fe(3+) is also immobilized with lanthanide ions like La(3+), Eu(3+), and Er(3+). The amount of Fe(3+) immobilized is determined as 0.7928 mg/g. Spherical morphology with narrow particle size dispersion is revealed by scanning electron microscopy (SEM). The surface area, pore volume and size distribution is determined by nitrogen adsorption porosimetery. The elemental composition and purity level is confirmed by energy dispersive X-ray spectroscopy (EDX) data. The derivatization to IMAC and RP is evaluated by Fourier transform infrared (FT-IR) spectroscopy. The polymer enables the efficient phosphopeptide enrichment to equal degree from casein variants, non-fat milk, egg yolk, human serum, and HeLa cell extract. The identification of phosphorylation sites can lead to the phosphorylation pathways to understand the post-translational modifications. The identification with their sequence coverage is made using Mascot and Phosphosite Plus. It is sensitive to enrich the phosphopeptides down to 2 femtomoles with very high selectivity of 1:2000 with BSA background. These attributes are linked to the higher surface area (173.1554 m(2)/g) of the designed polymer. The non-specific bindings, particularly the Fe(3+) linked acidic residues are also avoided. Four characteristic phosphopeptides (fibrinopeptide A and their hydrolytic products) from fibrinogen α-chain are identified from the human serum after the enrichment, which have link to the hepatocellular carcinoma (HCC). The proportions of fibrinogen and their phosphorylation products enriched by poly(AGE/DVB)-IMAC open new horizons in the biomarker discovery.
Collapse
Affiliation(s)
- Muhammad Najam-ul-Haq
- Institute of Chemical Sciences, Bahauddin Zakariya University , Multan 60800, Pakistan
| | | | | | | | | | | |
Collapse
|
10
|
Wang S, Xiong N, Dong XY, Sun Y. A novel nickel-chelated surfactant for affinity-based aqueous two-phase micellar extraction of histidine-rich protein. J Chromatogr A 2013; 1320:118-24. [DOI: 10.1016/j.chroma.2013.10.074] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2013] [Revised: 09/18/2013] [Accepted: 10/23/2013] [Indexed: 11/15/2022]
|
11
|
Hussain D, Najam-ul-Haq M, Jabeen F, Ashiq MN, Athar M, Rainer M, Huck CW, Bonn GK. Functionalized diamond nanopowder for phosphopeptides enrichment from complex biological fluids. Anal Chim Acta 2013; 775:75-84. [DOI: 10.1016/j.aca.2013.03.007] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2012] [Revised: 02/25/2013] [Accepted: 03/01/2013] [Indexed: 10/27/2022]
|
12
|
Li XS, Zhu GT, Luo YB, Yuan BF, Feng YQ. Synthesis and applications of functionalized magnetic materials in sample preparation. Trends Analyt Chem 2013. [DOI: 10.1016/j.trac.2012.10.015] [Citation(s) in RCA: 173] [Impact Index Per Article: 15.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
|
13
|
Güzel Y, Rainer M, Mirza MR, Messner CB, Bonn GK. Highly selective recovery of phosphopeptides using trypsin-assisted digestion of precipitated lanthanide–phosphoprotein complexes. Analyst 2013; 138:2897-905. [DOI: 10.1039/c3an00066d] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
14
|
Cui Q, Hou Y, Hou J, Pan P, Li LY, Bai G, Luo G. Preparation of functionalized alkynyl magnetic microspheres for the selective enrichment of cell glycoproteins based on click chemistry. Biomacromolecules 2012; 14:124-31. [PMID: 23214973 DOI: 10.1021/bm301477z] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
Functionalized alkynyl polyvinyl alcohol magnetic microspheres (PVA MMs) were developed for the specific enrichment of sialic acid-rich glycoproteins by click chemistry. The capture capability for proteins was evaluated through a novel dual-labeled bovine serum albumin (BSA) that utilizes fluorescence resonance energy transfer (FRET). The PVA MM parameters, including the size and coverage of functionalized groups, were optimized by response surface methodology. The optimal parameters obtained were 1.25-6.31 μm in size and 48.53-73.05% in coverage. Then, the optimal PVA MMs were synthesized, and the morphology and surface chemical properties were characterized by transmission electron microscopy (TEM), scanning electron microscopy (SEM), and Fourier transform infrared spectroscopy (FT-IR). To capture glycoproteins from the cell surface, a bioorthogonal chemical method was applied to metabolically label them with an azide group. The functionalized alkynyl PVA MMs showed a high specificity and strong binding capability for glycoproteins through a [3 + 2] cycloaddition reaction. The results indicated that the functionalized alkynyl PVA MMs could be applied to the enrichment of cell glycoproteins, and the merits of the MMs suggested an attractive and potential way to facilitate glycoprotein research.
Collapse
Affiliation(s)
- Qingxin Cui
- College of Pharmacy, State Key Laboratory of Medicinal Chemical Biology, Nankai University, Tianjin 300071, People's Republic of China
| | | | | | | | | | | | | |
Collapse
|
15
|
Ti4+-phosphate functionalized cellulose for phosphopeptides enrichment and its application in rice phosphoproteome analysis. J Chromatogr B Analyt Technol Biomed Life Sci 2012; 902:108-15. [DOI: 10.1016/j.jchromb.2012.06.033] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2012] [Revised: 05/17/2012] [Accepted: 06/13/2012] [Indexed: 11/23/2022]
|
16
|
Rajčanová M, Tichá M, Kučerová Z. Application of heptapeptides containing D-amino acid residues immobilized to magnetic particles and Sepharose for the study of binding properties of gastric aspartic proteases. J Sep Sci 2012; 35:1899-905. [DOI: 10.1002/jssc.201200221] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2012] [Revised: 04/18/2012] [Accepted: 04/19/2012] [Indexed: 11/08/2022]
Affiliation(s)
- Michaela Rajčanová
- Institute of Pathophysiology; First Faculty of Medicine; Charles University in Prague; Prague Czech Republic
| | - Marie Tichá
- Institute of Pathophysiology; First Faculty of Medicine; Charles University in Prague; Prague Czech Republic
- Department of Biochemistry; Faculty of Science; Charles University in Prague; Prague Czech Republic
| | - Zdenka Kučerová
- Institute of Pathophysiology; First Faculty of Medicine; Charles University in Prague; Prague Czech Republic
| |
Collapse
|
17
|
Macková H, Horák D, Petrovský E, Kovářová J. Magnetic hollow poly(N-isopropylacrylamide-co-N,N′-methylenebisacrylamide-co-glycidyl acrylate) particles prepared by inverse emulsion polymerization. Colloid Polym Sci 2012. [DOI: 10.1007/s00396-012-2609-y] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
|
18
|
Batalha IL, Lowe CR, Roque AC. Platforms for enrichment of phosphorylated proteins and peptides in proteomics. Trends Biotechnol 2012; 30:100-10. [DOI: 10.1016/j.tibtech.2011.07.004] [Citation(s) in RCA: 74] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2011] [Revised: 07/21/2011] [Accepted: 07/21/2011] [Indexed: 01/17/2023]
|
19
|
Affiliation(s)
- Carol L Nilsson
- Department of Pharmacology & Toxicology, University of Texas Medical Branch, 301 University Blvd., Galveston, Texas 77555-0617, United States.
| |
Collapse
|