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Dallocchio R, Dessì A, Sechi B, Peluso P. Molecular Dynamics Simulations of Amylose- and Cellulose-Based Selectors and Related Enantioseparations in Liquid Phase Chromatography. Molecules 2023; 28:7419. [PMID: 37959839 PMCID: PMC10647714 DOI: 10.3390/molecules28217419] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2023] [Revised: 10/27/2023] [Accepted: 10/30/2023] [Indexed: 11/15/2023] Open
Abstract
In the last few decades, theoretical and technical advancements in computer facilities and computational techniques have made molecular modeling a useful tool in liquid-phase enantioseparation science for exploring enantioselective recognition mechanisms underlying enantioseparations and for identifying selector-analyte noncovalent interactions that contribute to binding and recognition. Because of the dynamic nature of the chromatographic process, molecular dynamics (MD) simulations are particularly versatile in the visualization of the three-dimensional structure of analytes and selectors and in the unravelling of mechanisms at molecular levels. In this context, MD was also used to explore enantioseparation processes promoted by amylose and cellulose-based selectors, the most popular chiral selectors for liquid-phase enantioselective chromatography. This review presents a systematic analysis of the literature published in this field, with the aim of providing the reader with a comprehensive picture about the state of the art and what is still missing for modeling cellulose benzoates and the phenylcarbamates of amylose and cellulose and related enantioseparations with MD. Furthermore, advancements and outlooks, as well as drawbacks and pitfalls still affecting the applicability of MD in this field, are also discussed. The importance of integrating theoretical and experimental approaches is highlighted as an essential strategy for profiling mechanisms and noncovalent interaction patterns.
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Affiliation(s)
| | | | | | - Paola Peluso
- Unit of Enantioselective Chromatography and Molecular Recognition, Institute of Biomolecular Chemistry ICB, Secondary Branch of Sassari, CNR, Traversa La Crucca 3, Regione Baldinca, Li Punti, 07100 Sassari, Italy; (R.D.); (A.D.); (B.S.)
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2
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Rizzo S, Benincori T, Fontana F, Pasini D, Cirilli R. HPLC Enantioseparation of Rigid Chiral Probes with Central, Axial, Helical, and Planar Stereogenicity on an Amylose (3,5-Dimethylphenylcarbamate) Chiral Stationary Phase. Molecules 2022; 27:molecules27238527. [PMID: 36500620 PMCID: PMC9741213 DOI: 10.3390/molecules27238527] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2022] [Revised: 11/15/2022] [Accepted: 11/25/2022] [Indexed: 12/12/2022] Open
Abstract
The chiral resolving ability of the commercially available amylose (3,5-dimethylphenylcarbamate)-based chiral stationary phase (CSP) toward four chiral probes representative of four kinds of stereogenicity (central, axial, helical, and planar) was investigated. Besides chirality, the evident structural feature of selectands is an extremely limited conformational freedom. The chiral rigid analytes were analyzed by using pure short alcohols as mobile phases at different column temperatures. The enantioselectivity was found to be suitable for all compounds investigated. This evidence confirms that the use of the amylose-based CSP in HPLC is an effective strategy for obtaining the resolution of chiral compounds containing any kind of stereogenic element. In addition, the experimental retention and enantioselectivity behavior, as well as the established enantiomer elution order of the investigated chiral analytes, may be used as key information to track essential details on the enantiorecognition mechanism of the amylose-based chiral stationary phase.
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Affiliation(s)
- Simona Rizzo
- CNR Istituto di Scienze e Tecnologie Chimiche “Giulio Natta”, Via C. Golgi 19, 20133 Milano, Italy
| | - Tiziana Benincori
- Dipartimento di Scienza e Alta Tecnologia, Università degli Studi dell’Insubria, Via Valleggio 11, 22100 Como, Italy
| | - Francesca Fontana
- Dipartimento di Ingegneria e Scienze Applicate, Università di Bergamo, Viale Marconi 5, 24044 Dalmine, Italy
- CSGI Bergamo R.U., Viale Marconi 5, 24044 Dalmine, Italy
| | - Dario Pasini
- Department of Chemistry and INSTM Research Unit, University of Pavia, 27100 Pavia, Italy
| | - Roberto Cirilli
- Centro Nazionale per il Controllo e la Valutazione dei Farmaci, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161 Rome, Italy
- Correspondence:
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3
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Peluso P, Chankvetadze B. Recognition in the Domain of Molecular Chirality: From Noncovalent Interactions to Separation of Enantiomers. Chem Rev 2022; 122:13235-13400. [PMID: 35917234 DOI: 10.1021/acs.chemrev.1c00846] [Citation(s) in RCA: 57] [Impact Index Per Article: 28.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
It is not a coincidence that both chirality and noncovalent interactions are ubiquitous in nature and synthetic molecular systems. Noncovalent interactivity between chiral molecules underlies enantioselective recognition as a fundamental phenomenon regulating life and human activities. Thus, noncovalent interactions represent the narrative thread of a fascinating story which goes across several disciplines of medical, chemical, physical, biological, and other natural sciences. This review has been conceived with the awareness that a modern attitude toward molecular chirality and its consequences needs to be founded on multidisciplinary approaches to disclose the molecular basis of essential enantioselective phenomena in the domain of chemical, physical, and life sciences. With the primary aim of discussing this topic in an integrated way, a comprehensive pool of rational and systematic multidisciplinary information is provided, which concerns the fundamentals of chirality, a description of noncovalent interactions, and their implications in enantioselective processes occurring in different contexts. A specific focus is devoted to enantioselection in chromatography and electromigration techniques because of their unique feature as "multistep" processes. A second motivation for writing this review is to make a clear statement about the state of the art, the tools we have at our disposal, and what is still missing to fully understand the mechanisms underlying enantioselective recognition.
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Affiliation(s)
- Paola Peluso
- Istituto di Chimica Biomolecolare ICB, CNR, Sede secondaria di Sassari, Traversa La Crucca 3, Regione Baldinca, Li Punti, I-07100 Sassari, Italy
| | - Bezhan Chankvetadze
- Institute of Physical and Analytical Chemistry, School of Exact and Natural Sciences, Tbilisi State University, Chavchavadze Avenue 3, 0179 Tbilisi, Georgia
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4
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Maia PP, Nascimento CA, Silva CF, Nascimento Jr. CS. Chiral separation study of atenolol and carvedilol β-blocker drugs by DFT calculations. COMPUT THEOR CHEM 2022. [DOI: 10.1016/j.comptc.2022.113741] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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5
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Cantatore C, Korb M, Lang H, Cirilli R. ON/OFF receptor-like enantioseparation of planar chiral 1,2-ferrocenes on an amylose-based chiral stationary phase: The role played by 2-propanol. Anal Chim Acta 2022; 1211:339880. [DOI: 10.1016/j.aca.2022.339880] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2022] [Revised: 04/20/2022] [Accepted: 04/25/2022] [Indexed: 01/02/2023]
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6
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Rosetti A, Preda G, Villani C, Pierini M, Pasini D, Cirilli R. Triptycene derivatives as chiral probes for studying the molecular enantiorecognition on sub-2-μm particle cellulose tris(3,5-dimethylphenylcarbamate) chiral stationary phase. Chirality 2021; 33:883-890. [PMID: 34571576 DOI: 10.1002/chir.23358] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2021] [Revised: 08/04/2021] [Accepted: 08/26/2021] [Indexed: 11/09/2022]
Abstract
Two chiral triptycene derivatives were analyzed on the Chiralpak IB-U column packed with cellulose tris(3,5-dimethylphenylcarbamate)-based sub-2-μm diameter particles. Under normal-phase conditions, sub-minute baseline enantioseparations were obtained. Differences in structural elements and chromatographic behavior of the investigated compounds were evaluated to identify the interactions that drive the chiral discrimination process. From the evaluation of the experimental chromatographic data, it was found that hydrogen bond formation is essential for the separation of enantiomers.
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Affiliation(s)
- Alessia Rosetti
- Department of Chemistry and Drug Technology, Sapienza University of Rome, Rome, Italy
| | - Giovanni Preda
- Department of Chemistry and INSTM Research Unit, University of Pavia, Pavia, Italy
| | - Claudio Villani
- Department of Chemistry and Drug Technology, Sapienza University of Rome, Rome, Italy
| | - Marco Pierini
- Department of Chemistry and Drug Technology, Sapienza University of Rome, Rome, Italy
| | - Dario Pasini
- Department of Chemistry and INSTM Research Unit, University of Pavia, Pavia, Italy
| | - Roberto Cirilli
- National Center for the Control and Evaluation of Drugs, Istituto Superiore di Sanità, Rome, Italy
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Krivoshein AV, Hu Z. Nonideal behavior of void volume markers in polar-organic chiral HPLC on polysaccharide-based chiral stationary phases. J LIQ CHROMATOGR R T 2021; 44:476-483. [DOI: 10.1080/10826076.2021.1960858] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
| | - Zhaochang Hu
- Chemistry Program, Department of Physical and Applied Sciences, University of Houston – Clear Lake, Houston, TX, USA
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8
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Noncovalent interactions in high-performance liquid chromatography enantioseparations on polysaccharide-based chiral selectors. J Chromatogr A 2020; 1623:461202. [DOI: 10.1016/j.chroma.2020.461202] [Citation(s) in RCA: 37] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2020] [Revised: 05/02/2020] [Accepted: 05/04/2020] [Indexed: 12/13/2022]
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9
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Silva CF, Nascimento TA, Guimarães L, Borges KB, Nascimento CS. Elucidation of the chromatographic enantiomer elution order for praziquantel: An experimental and theoretical assessment. Chirality 2020; 32:353-358. [DOI: 10.1002/chir.23164] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2019] [Accepted: 12/17/2019] [Indexed: 11/11/2022]
Affiliation(s)
- Camilla Fonseca Silva
- Departamento de Ciências Naturais (DCNAT)Universidade Federal de São João Del‐Rei (UFSJ), Campus Dom Bosco São João Minas Gerais Brazil
| | - Tienne Aparecida Nascimento
- Departamento de Ciências Naturais (DCNAT)Universidade Federal de São João Del‐Rei (UFSJ), Campus Dom Bosco São João Minas Gerais Brazil
| | - Luciana Guimarães
- Departamento de Ciências Naturais (DCNAT)Universidade Federal de São João Del‐Rei (UFSJ), Campus Dom Bosco São João Minas Gerais Brazil
| | - Keyller Bastos Borges
- Departamento de Ciências Naturais (DCNAT)Universidade Federal de São João Del‐Rei (UFSJ), Campus Dom Bosco São João Minas Gerais Brazil
| | - Clebio Soares Nascimento
- Departamento de Ciências Naturais (DCNAT)Universidade Federal de São João Del‐Rei (UFSJ), Campus Dom Bosco São João Minas Gerais Brazil
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10
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Computational studies in enantioselective liquid chromatography: Forty years of evolution in docking- and molecular dynamics-based simulations. Trends Analyt Chem 2020. [DOI: 10.1016/j.trac.2019.115703] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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11
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Silva CF, Guimarães L, Borges KB, Nascimento CS. Development and validation of an experimental and theoretical method for the chiral discrimination of dinotefuran. Chirality 2019; 32:53-63. [DOI: 10.1002/chir.23136] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2019] [Accepted: 09/09/2019] [Indexed: 02/06/2023]
Affiliation(s)
- Camilla Fonseca Silva
- Departamento de Ciências Naturais (DCNAT)Universidade Federal de São João Del‐Rei (UFSJ) São João Del Rei MG Brazil
| | - Luciana Guimarães
- Departamento de Ciências Naturais (DCNAT)Universidade Federal de São João Del‐Rei (UFSJ) São João Del Rei MG Brazil
| | - Keyller Bastos Borges
- Departamento de Ciências Naturais (DCNAT)Universidade Federal de São João Del‐Rei (UFSJ) São João Del Rei MG Brazil
| | - Clebio Soares Nascimento
- Departamento de Ciências Naturais (DCNAT)Universidade Federal de São João Del‐Rei (UFSJ) São João Del Rei MG Brazil
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12
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Carradori S, Secci D, Guglielmi P, Pierini M, Cirilli R. High-performance liquid chromatography enantioseparation of chiral 2-(benzylsulfinyl)benzamide derivatives on cellulose tris(3,5-dichlorophenylcarbamate) chiral stationary phase. J Chromatogr A 2019; 1610:460572. [PMID: 31606155 DOI: 10.1016/j.chroma.2019.460572] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2019] [Revised: 09/19/2019] [Accepted: 09/25/2019] [Indexed: 11/16/2022]
Abstract
Recently it has been reported that immobilized chlorinated-type chiral stationary phases based on cellulose tris(3,5-dichlorophenylcarbamate) are able to express an outstanding enantioselectivity towards the structure of 2-(benzylsulfinyl)benzamide. We now introduce two homologue series of chiral sulfoxides based on the same 2-(sulfinyl)benzoyl core as the prototype of new selectands for HPLC, whose enantioselectivity could be modulable through the replacement of the benzyl group with an unbranched alkyl chain varying in length from 1 to 5 carbon atoms. HPLC parameters such as mobile phase composition and column temperature have been carefully evaluated in order to get pertinent structure-enantioselectivity relationships. The enantiomer elution order was unambiguously determined by a combined strategy involving theoretical and experimental procedures. Two cases of temperature-dependent inversion of the elution order of enantiomers in the operative temperature range of chiral chromatographic support were observed.
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Affiliation(s)
- Simone Carradori
- Dipartimento di Farmacia, Università "G. d'Annunzio" di Chieti-Pescara, Via dei Vestini 31, 66100 Chieti, Italy
| | - Daniela Secci
- Dipartimento di Chimica e Tecnologie del Farmaco, "Sapienza" Università di Roma, P.le A. Moro 5, 00185 Rome, Italy
| | - Paolo Guglielmi
- Dipartimento di Chimica e Tecnologie del Farmaco, "Sapienza" Università di Roma, P.le A. Moro 5, 00185 Rome, Italy
| | - Marco Pierini
- Dipartimento di Chimica e Tecnologie del Farmaco, "Sapienza" Università di Roma, P.le A. Moro 5, 00185 Rome, Italy
| | - Roberto Cirilli
- Centro nazionale per il controllo e la valutazione dei farmaci, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161 Rome, Italy.
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Peluso P, Dessì A, Dallocchio R, Mamane V, Cossu S. Recent studies of docking and molecular dynamics simulation for liquid-phase enantioseparations. Electrophoresis 2019; 40:1881-1896. [PMID: 30710444 DOI: 10.1002/elps.201800493] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2018] [Revised: 01/25/2019] [Accepted: 01/25/2019] [Indexed: 12/16/2022]
Abstract
Liquid-phase enantioseparations have been fruitfully applied in several fields of science. Various applications along with technical and theoretical advancements contributed to increase significantly the knowledge in this area. Nowadays, chromatographic techniques, in particular HPLC on chiral stationary phase, are considered as mature technologies. In the last thirty years, CE has been also recognized as one of the most versatile technique for analytical scale separation of enantiomers. Despite the huge number of papers published in these fields, understanding mechanistic details of the stereoselective interaction between selector and selectand is still an open issue, in particular for high-molecular weight chiral selectors like polysaccharide derivatives. With the ever growing improvement of computer facilities, hardware and software, computational techniques have become a basic tool in enantioseparation science. In this field, molecular docking and dynamics simulations proved to be extremely adaptable to model and visualize at molecular level the spatial proximity of interacting molecules in order to predict retention, selectivity, enantiomer elution order, and profile noncovalent interaction patterns underlying the recognition process. On this basis, topics and trends in using docking and molecular dynamics as theoretical complement of experimental LC and CE chiral separations are described herein. The basic concepts of these computational strategies and seminal studies performed over time are presented, with a specific focus on literature published between 2015 and November 2018. A systematic compilation of all published literature has not been attempted.
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Affiliation(s)
- Paola Peluso
- Istituto di Chimica Biomolecolare ICB CNR - Sede Secondaria di Sassari, Sassari, Sardegna, Italy
| | - Alessandro Dessì
- Istituto di Chimica Biomolecolare ICB CNR - Sede Secondaria di Sassari, Sassari, Sardegna, Italy
| | - Roberto Dallocchio
- Istituto di Chimica Biomolecolare ICB CNR - Sede Secondaria di Sassari, Sassari, Sardegna, Italy
| | - Victor Mamane
- Institut de Chimie de Strasbourg, Strasbourg, Alsace, France
| | - Sergio Cossu
- Dipartimento di Scienze Molecolari e Nanosistemi DSMN, Università Ca' Foscari Venezia, Mestre Venezia, Veneto, Italy
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Abstract
Stereospecific recognition of chiral molecules plays an important role in nature as the basis of the interaction of chiral bioactive compounds with the chiral target structures. In separation sciences such as chromatographic and capillary electromigration techniques, interactions between chiral analytes and chiral selectors, i.e., the formation of transient diastereomeric complexes in thermodynamic equilibria, are the basis for chiral separations. Due to the large structural variety of chiral selectors, different structural features contribute to the overall chiral recognition process. This introductory chapter briefly summarizes the present understanding of the structural enantioselective recognition processes for various types of chiral selectors.
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Affiliation(s)
- Gerhard K E Scriba
- Department of Pharmaceutical Chemistry, University of Jena, Jena, Germany.
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Cirilli R. HPLC Enantioseparations with Polysaccharide-Based Chiral Stationary Phases in HILIC Conditions. Methods Mol Biol 2019; 1985:127-146. [PMID: 31069732 DOI: 10.1007/978-1-4939-9438-0_7] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
In contrast to achiral hydrophilic interaction liquid chromatography (HILIC), which is a popular and largely applied technique to analyze polar compounds such as pharmaceuticals, metabolites, proteins, peptides, amino acids, oligonucleotides, and carbohydrates, the introduction of the HILIC concept in enantioselective chromatography has been relatively recent and scarcely debated. In this chapter, the HILIC enantioseparations carried out on polysaccharide-based chiral stationary phases are grouped and discussed. Another objective of this chapter is to provide a comprehensive overview and insight into the experimental conditions needed to operate under HILIC mode. Finally, to stimulate and facilitate the application of this chromatographic technique, a detailed experimental protocol of a chiral resolution on a chlorinated cellulose-based chiral stationary phase under HILIC conditions is described.
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Affiliation(s)
- Roberto Cirilli
- National Institute of Health, Centre for the Control and Evaluation of Medicines, Rome, Italy.
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Preparation of polysaccharide-based chiral stationary phases on SiO2@Ag core–shell particles by means of coating and intermolecular polycondensation and comparative liquid chromatography enantioseparations. Anal Bioanal Chem 2017; 410:441-449. [DOI: 10.1007/s00216-017-0734-7] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2017] [Revised: 10/05/2017] [Accepted: 10/27/2017] [Indexed: 10/18/2022]
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17
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Carradori S, Pierini M, Menta S, Secci D, Fioravanti R, Cirilli R. 3-(Phenyl-4-oxy)-5-phenyl-4,5-dihydro-(1 H )-pyrazole: A fascinating molecular framework to study the enantioseparation ability of the amylose (3,5-dimethylphenylcarbamate) chiral stationary phase. Part I. Structure-enantioselectivity relationships. J Chromatogr A 2016; 1467:221-227. [DOI: 10.1016/j.chroma.2016.07.034] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2016] [Revised: 07/12/2016] [Accepted: 07/14/2016] [Indexed: 11/29/2022]
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18
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Suliman FO, Elbashir AA, Schmitz OJ. Study on the separation of ofloxacin enantiomers by hydroxyl-propyl-β-cyclodextrin as a chiral selector in capillary electrophoresis: a computational approach. J INCL PHENOM MACRO 2015. [DOI: 10.1007/s10847-015-0547-2] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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