1
|
Štěpánová S, Kašička V. Determination of physicochemical parameters of (bio)molecules and (bio)particles by capillary electromigration methods. J Sep Sci 2024; 47:e2400174. [PMID: 38867483 DOI: 10.1002/jssc.202400174] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2024] [Revised: 05/03/2024] [Accepted: 05/10/2024] [Indexed: 06/14/2024]
Abstract
The review provides an overview of recent developments and applications of capillary electromigration (CE) methods for the determination of important physicochemical parameters of various (bio)molecules and (bio)particles. These parameters include actual and limiting (absolute) ionic mobilities, effective electrophoretic mobilities, effective charges, isoelectric points, electrokinetic potentials, hydrodynamic radii, diffusion coefficients, relative molecular masses, acidity (ionization) constants, binding constants and stoichiometry of (bio)molecular complexes, changes of Gibbs free energy, enthalpy and entropy and rate constants of chemical reactions and interactions, retention factors and partition and distribution coefficients. For the determination of these parameters, the following CE methods are employed: zone electrophoresis in a free solution or in sieving media, isotachophoresis, isoelectric focusing, affinity electrophoresis, electrokinetic chromatography, and electrochromatography. In the individual sections, the procedures for the determination of the above parameters by the particular CE methods are described.
Collapse
Affiliation(s)
- Sille Štěpánová
- Electromigration methods, Institute of Organic Chemistry and Biochemistry, The Czech Academy of Sciences, Prague, Czech Republic
| | - Václav Kašička
- Electromigration methods, Institute of Organic Chemistry and Biochemistry, The Czech Academy of Sciences, Prague, Czech Republic
| |
Collapse
|
2
|
Somnin C, Chamieh J, Saetear P, Cottet H. Taylor dispersion analysis using capacitively coupled contactless conductivity detector. Talanta 2024; 272:125815. [PMID: 38402737 DOI: 10.1016/j.talanta.2024.125815] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2023] [Revised: 02/17/2024] [Accepted: 02/18/2024] [Indexed: 02/27/2024]
Abstract
Taylor dispersion analysis (TDA) is a simple and absolute method to determine the hydrodynamic radius of solutes that respond to UV or fluorescence detections. To broaden the application range of TDA, it is necessary to develop new detection modes. This study aims to study capacitively coupled contactless conductivity detector (C4D) for the analysis of charged macromolecules. The detection sensitivities and hydrodynamic radii were compared for a C4D detector and a UV detector on positively or negatively charged polymers responding both to UV and C4D (poly-L-lysine and poly(acrylamide-co-2-acrylamido-1-methyl-propanesulfonate). The influence of the composition of the background electrolyte on the detection sensitivity has been studied and optimized for C4D detection. The influence of the molar mass and of the polymer chemical charge density on the C4D and UV sensitivities of detection have been investigated based on well-characterized copolymers samples of different molar masses and charge densities. The advantages and disadvantages compared to UV detection, as well as the range of applicability of C4D detection in TDA were identified. C4D detection can be an alternative method for sizing charged polymers of reasonable molar mass (typically below 105 g mol-1) that do not absorb in UV. A decline in the sensitivity of detection in C4D was observed for higher molar masses.
Collapse
Affiliation(s)
| | - Joseph Chamieh
- IBMM, Université de Montpellier, CNRS, ENSCM, Montpellier, France
| | - Phoonthawee Saetear
- Flow Innovation-Research for Science and Technology Laboratories (Firstlabs), Ratchathewi District, Bangkok, 10110, Thailand; Department of Chemistry and Center of Excellence for Innovation in Chemistry, Faculty of Science, Mahidol University, Rama 6 Road, Ratchathewi District, Bangkok, 10400, Thailand.
| | - Hervé Cottet
- IBMM, Université de Montpellier, CNRS, ENSCM, Montpellier, France.
| |
Collapse
|
3
|
Wu H, Zhang R, Zhang W, Hong J, Xiang Y, Xu W. Rapid 3-dimensional shape determination of globular proteins by mobility capillary electrophoresis and native mass spectrometry. Chem Sci 2020; 11:4758-4765. [PMID: 34122932 PMCID: PMC8159243 DOI: 10.1039/d0sc01965h] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
Abstract
Established high-throughput proteomics methods provide limited information on the stereostructures of proteins. Traditional technologies for protein structure determination typically require laborious steps and cannot be performed in a high-throughput fashion. Here, we report a new medium throughput method by combining mobility capillary electrophoresis (MCE) and native mass spectrometry (MS) for the 3-dimensional (3D) shape determination of globular proteins in the liquid phase, which provides both the geometric structure and molecular mass information of proteins. A theory was established to correlate the ion hydrodynamic radius and charge state distribution in the native mass spectrum with protein geometrical parameters, through which a low-resolution structure (shape) of the protein could be determined. Our test data of 11 different globular proteins showed that this approach allows us to determine the shapes of individual proteins, protein complexes and proteins in a mixture, and to monitor protein conformational changes. Besides providing complementary protein structure information and having mixture analysis capability, this MCE and native MS based method is fast in speed and low in sample consumption, making it potentially applicable in top–down proteomics and structural biology for intact globular protein or protein complex analysis. Using native mass spectrometry and mobility capillary electrophoresis, the ellipsoid dimensions of globular proteins or protein complexes could be measured efficiently.![]()
Collapse
Affiliation(s)
- Haimei Wu
- School of Life Science, Beijing Institute of Technology No. 5 South Zhongguancun Street, Haidian Dist Beijing China
| | - Rongkai Zhang
- School of Life Science, Beijing Institute of Technology No. 5 South Zhongguancun Street, Haidian Dist Beijing China
| | - Wenjing Zhang
- School of Life Science, Beijing Institute of Technology No. 5 South Zhongguancun Street, Haidian Dist Beijing China
| | - Jie Hong
- School of Life Science, Beijing Institute of Technology No. 5 South Zhongguancun Street, Haidian Dist Beijing China
| | - Ye Xiang
- Department of Basic Medical Sciences, School of Medicine, Tsinghua University Beijng China
| | - Wei Xu
- School of Life Science, Beijing Institute of Technology No. 5 South Zhongguancun Street, Haidian Dist Beijing China
| |
Collapse
|
4
|
Zhang W, Wu H, Zhang R, Fang X, Xu W. Structure and effective charge characterization of proteins by a mobility capillary electrophoresis based method. Chem Sci 2019; 10:7779-7787. [PMID: 31588326 PMCID: PMC6761862 DOI: 10.1039/c9sc02039j] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2019] [Accepted: 07/02/2019] [Indexed: 12/18/2022] Open
Abstract
Measuring the conformations and effective charges of proteins in solution is critical for investigating protein bioactivity, but their rapid analysis remains a challenging problem. Here we report a mobility capillary electrophoresis (MCE) based method for the rapid analysis of protein stereo-structures and effective charges in different solution environments. With the capability of mixture separation, MCE measures the hydrodynamic radius of a protein through Taylor dispersion analysis and its effective charge through ion mobility analysis. The experimental results acquired from MCE are then utilized to restrain molecular dynamics simulations, so that the most probable conformation of that protein can be obtained. As proof-of-concept demonstrations, the charge states and structures of five proteins were analyzed under close to native environments. The conformation transitions and charge state variations of bovine serum albumin and lysozyme under different pH conditions were also investigated. This method is promising for high-throughput protein analysis, which could potentially be coupled with mass spectrometry for investigating protein stereo-structures and functions in top-down proteomics.
Collapse
Affiliation(s)
- Wenjing Zhang
- School of Life Science , Beijing Institute of Technology , No. 5 South Zhongguancun Street, Haidian Dist , Beijing , China .
| | - Haimei Wu
- School of Life Science , Beijing Institute of Technology , No. 5 South Zhongguancun Street, Haidian Dist , Beijing , China .
| | - Rongkai Zhang
- School of Life Science , Beijing Institute of Technology , No. 5 South Zhongguancun Street, Haidian Dist , Beijing , China .
| | - Xiang Fang
- National Institute of Metrology , No. 18, Bei San Huan Dong Lu, Chaoyang Dist , Beijing , China
| | - Wei Xu
- School of Life Science , Beijing Institute of Technology , No. 5 South Zhongguancun Street, Haidian Dist , Beijing , China .
| |
Collapse
|
5
|
Kašička V. Recent developments in capillary and microchip electroseparations of peptides (2015-mid 2017). Electrophoresis 2017; 39:209-234. [PMID: 28836681 DOI: 10.1002/elps.201700295] [Citation(s) in RCA: 43] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2017] [Revised: 08/15/2017] [Accepted: 08/16/2017] [Indexed: 12/17/2022]
Abstract
The review brings a comprehensive overview of recent developments and applications of high performance capillary and microchip electroseparation methods (zone electrophoresis, isotachophoresis, isoelectric focusing, affinity electrophoresis, electrokinetic chromatography, and electrochromatography) to analysis, microscale isolation, purification, and physicochemical and biochemical characterization of peptides in the years 2015, 2016, and ca. up to the middle of 2017. Advances in the investigation of electromigration properties of peptides and in the methodology of their analysis (sample preseparation, preconcentration and derivatization, adsorption suppression and EOF control, and detection) are described. New developments in particular CE and CEC methods are presented and several types of their applications to peptide analysis are reported: qualitative and quantitative analysis, determination in complex (bio)matrices, monitoring of chemical and enzymatical reactions and physical changes, amino acid, sequence and chiral analysis, and peptide mapping of proteins. Some micropreparative peptide separations are shown and capabilities of CE and CEC methods to provide important physicochemical characteristics of peptides are demonstrated.
Collapse
Affiliation(s)
- Václav Kašička
- Institute of Organic Chemistry and Biochemistry, The Czech Academy of Sciences, Prague, Czech Republic
| |
Collapse
|
6
|
Tůmová T, Monincová L, Nešuta O, Čeřovský V, Kašička V. Determination of effective charges and ionic mobilities of polycationic antimicrobial peptides by capillary isotachophoresis and capillary zone electrophoresis. Electrophoresis 2017; 38:2018-2024. [DOI: 10.1002/elps.201700092] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2017] [Revised: 04/14/2017] [Accepted: 04/21/2017] [Indexed: 12/23/2022]
Affiliation(s)
- Tereza Tůmová
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences; Prague Czech Republic
- Faculty of Food and Biochemical Technology; University of Chemistry and Technology Prague; Prague Czech Republic
| | - Lenka Monincová
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences; Prague Czech Republic
| | - Ondřej Nešuta
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences; Prague Czech Republic
- Faculty of Food and Biochemical Technology; University of Chemistry and Technology Prague; Prague Czech Republic
| | - Václav Čeřovský
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences; Prague Czech Republic
| | - Václav Kašička
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences; Prague Czech Republic
| |
Collapse
|
7
|
Gonzalez P, Leclercq L, Cottet H. What is the Contribution of Counter-Ions to the Absolute Molar Mass of Polyelectrolytes Determined by SEC-MALLS? MACROMOL CHEM PHYS 2016. [DOI: 10.1002/macp.201600295] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Philippe Gonzalez
- Institut des Biomolécules Max Mousseron (IBMM, UMR 5247 CNRS-Université de Montpellier Ecole Nationale Supérieure de Chimie de Montpellier); Place Eugène Bataillon; CC 1706 34095 Montpellier France
| | - Laurent Leclercq
- Institut des Biomolécules Max Mousseron (IBMM, UMR 5247 CNRS-Université de Montpellier Ecole Nationale Supérieure de Chimie de Montpellier); Place Eugène Bataillon; CC 1706 34095 Montpellier France
| | - Hervé Cottet
- Institut des Biomolécules Max Mousseron (IBMM, UMR 5247 CNRS-Université de Montpellier Ecole Nationale Supérieure de Chimie de Montpellier); Place Eugène Bataillon; CC 1706 34095 Montpellier France
| |
Collapse
|
8
|
Malá Z, Gebauer P, Boček P. Analytical capillary isotachophoresis after 50 years of development: Recent progress 2014-2016. Electrophoresis 2016; 38:9-19. [DOI: 10.1002/elps.201600289] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2016] [Revised: 07/15/2016] [Accepted: 07/15/2016] [Indexed: 12/13/2022]
Affiliation(s)
- Zdena Malá
- Institute of Analytical Chemistry of the Czech Academy of Sciences; v.v.i; Brno Czech Republic
| | - Petr Gebauer
- Institute of Analytical Chemistry of the Czech Academy of Sciences; v.v.i; Brno Czech Republic
| | - Petr Boček
- Institute of Analytical Chemistry of the Czech Academy of Sciences; v.v.i; Brno Czech Republic
| |
Collapse
|
9
|
Štěpánová S, Kašička V. Recent applications of capillary electromigration methods to separation and analysis of proteins. Anal Chim Acta 2016; 933:23-42. [DOI: 10.1016/j.aca.2016.06.006] [Citation(s) in RCA: 78] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2016] [Revised: 05/10/2016] [Accepted: 06/03/2016] [Indexed: 10/21/2022]
|
10
|
Kašička V. Recent developments in capillary and microchip electroseparations of peptides (2013-middle 2015). Electrophoresis 2015; 37:162-88. [DOI: 10.1002/elps.201500329] [Citation(s) in RCA: 60] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2015] [Revised: 08/25/2015] [Accepted: 08/25/2015] [Indexed: 12/16/2022]
Affiliation(s)
- Václav Kašička
- Institute of Organic Chemistry and Biochemistry, v.v.i; The Czech Academy of Sciences; Prague Czech Republic
| |
Collapse
|