Multivariate analysis of variance of designed chromatographic data. A case study involving fermentation of rooibos tea

Application of a Cost-Effective Visible/Near Infrared Optical Prototype for the Measurement of Qualitative Parameters of Chardonnay Grapes

In this paper, a cost-effective visible/near infrared optical prototype was tested for grape maturity monitoring. The device was used to quantify the qualitative parameters of Chardonnay grapes, based on the combination of spectroscopic data and the creation of predictive models. The optical acquisitions were performed directly in the field through the use of 12 wavelengths in the vis/NIR range, i.e., 450, 500, 550, 570, 600, 610, 650, 680, 730, 760, 810 and 860 nanometers. The prediction of the qualitative parameters was carried out through a multivariate model, partial least square (PLS) regression technique and built knowing the real values of the parameters, i.e., total soluble solids (TSS), titratable acidity (TA) and pH measured through the reference laboratory analyses. Sampling included two harvest years. The most efficient model was the one for TSS evaluation that gave a R2 = 0.87 (independent test set validation). The results demonstrated that the optical device is able to provide useful information about the ripening parameters of Chardonnay grapes directly in the field in order to predict its correct maturation stage and, therefore, support operators in rapid and objective decision making. Overall, the use of the prototype promotes a sustainable approach and viticulture 4.0.

Application of Sebum Lipidomics to Biomarkers Discovery in Neurodegenerative Diseases

Lipidomics is strategic in the discovery of biomarkers of neurodegenerative diseases (NDDs). The skin surface lipidome bears the potential to provide biomarker candidates in the detection of pathological processes occurring in distal organs. We investigated the sebum composition to search diagnostic and, possibly, prognostic, biomarkers of Alzheimer’s disease (AD) and Parkinson’s disease (PD). The observational study included 64 subjects: 20 characterized as “probable AD with documented decline”, 20 as “clinically established PD”, and 24 healthy subjects (HS) of comparable age. The analysis of sebum by GCMS and TLC retrieved the amounts (µg) of 41 free fatty acids (FFAs), 7 fatty alcohols (FOHs), vitamin E, cholesterol, squalene, and total triglycerides (TGs) and wax esters (WEs). Distributions of sebum lipids in NDDs and healthy conditions were investigated with multivariate ANOVA-simultaneous component analysis (ASCA). The deranged sebum composition associated with the PD group showed incretion of most composing lipids compared to HS, whereas only two lipid species (vitamin E and FOH14:0) were discriminant of AD samples and presented lower levels than HS sebum. Thus, sebum lipid biosynthetic pathways are differently affected in PD and AD. The characteristic sebum bio-signatures detected support the value of sebum lipidomics in the biomarkers search in NDDs.

Chemometric Strategies for Spectroscopy-Based Food Authentication

In the last decades, spectroscopic techniques have played an increasingly crucial role in analytical chemistry, due to the numerous advantages they offer. Several of these techniques (e.g., Near-InfraRed—NIR—or Fourier Transform InfraRed—FT-IR—spectroscopy) are considered particularly valuable because, by means of suitable equipment, they enable a fast and non-destructive sample characterization. This aspect, together with the possibility of easily developing devices for on- and in-line applications, has recently favored the diffusion of such approaches especially in the context of foodstuff quality control. Nevertheless, the complex nature of the signal yielded by spectroscopy instrumentation (regardless of the spectral range investigated) inevitably calls for the use of multivariate chemometric strategies for its accurate assessment and interpretation. This review aims at providing a comprehensive overview of some of the chemometric tools most commonly exploited for spectroscopy-based foodstuff analysis and authentication. More in detail, three different scenarios will be surveyed here: data exploration, calibration and classification. The main methodologies suited to addressing each one of these different tasks will be outlined and examples illustrating their use will be provided alongside their description.

Antioxidant and Cytoprotective Effects of Tibetan Tea and Its Phenolic Components

Tibetan tea (Kangzhuan) is an essential beverage of the Tibetan people. In this study, a lyophilized aqueous extract of Tibetan tea (LATT) was prepared and analyzed by HPLC. The results suggested that there were at least five phenolic components, including gallic acid, and four catechins (i.e., (+)-catechin, (−)-catechin gallate (CG), (−)-epicatechin gallate (ECG), and (−)-epigallocatechin gallate). Gallic acid, the four catechins, and LATT were then comparatively investigated by four antioxidant assays: ferric reducing antioxidant power, 2-phenyl-4,4,5,5-tetramethylimidazoline-1-oxyl 3-oxide radical (PTIO•) scavenging, 1,1-diphenyl-2-picryl-hydrazl radical scavenging, and 2,2′-azino-bis(3-ethylbenzo-thiazoline-6-sulfonic acid) radical scavenging assays. In these assays, LATT, along with the five phenolic components, increased their antioxidant effects in a concentration-dependent manner; however, the half maximal scavenging concentrations of ECG were always lower than those of CG. Gallic acid and the four catechins were also suggested to chelate Fe²⁺ based on UV-visible spectral analysis. Ultra-performance liquid chromatography coupled with electrospray ionization quadrupole time-of-flight tandem mass spectrometry (UPLC−ESI−Q−TOF−MS/MS) analysis suggested that, when mixed with PTIO•, the five phenolic components could yield two types of radical adduct formation (RAF) products (i.e., tea phenolic dimers and tea phenolic-PTIO• adducts). In a flow cytometry assay, (+)-catechin and LATT was observed to have a cytoprotective effect towards oxidative-stressed bone marrow-derived mesenchymal stem cells. Based on this evidence, we concluded that LATT possesses antioxidative or cytoprotective properties. These effects may mainly be attributed to the presence of phenolic components, including gallic acid and the four catechins. These phenolic components may undergo electron transfer, H⁺-transfer, and Fe²⁺-chelating pathways to exhibit antioxidative or cytoprotective effects. In these effects, two diastereoisomeric CG and ECG showed differences to which a steric effect from the 2-carbon may contribute. Phenolic component decay may cause RAF in the antioxidant process.

Untargeted analysis of chromatographic data for green and fermented rooibos: Problem with size effect removal

While analyzing chromatographic data, it is necessary to preprocess it properly before exploration and/or supervised modeling. To make chromatographic signals comparable, it is crucial to remove the scaling effect, caused by differences in overall sample concentrations. One of the efficient methods of signal scaling is Probabilistic Quotient Normalization (PQN) [1]. However, it can be applied only to data for which the majority of features do not vary systematically among the studied classes of signals. When studying the influence of the traditional "fermentation" (oxidation) process on the concentration of 56 individual peaks detected in rooibos plant material, this assumption is not fulfilled. In this case, the only possible solution is the analysis of pairwise log-ratios, which are not influenced by the scaling constant. To estimate significant features, i.e., peaks differentiating the studied classes of samples (green and fermented rooibos plant material), we propose the application of rPLR (robust pair-wise log-ratios) as proposed by Walach et al. [2]. It allows for fast computation and identification of the significant features in terms of original variables (peaks) which is problematic, while working with the unfolded pair-wise log ratios. As demonstrated, it can be applied to designed data sets and in the case of contaminated data, it allows proper conclusions.