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Brasier AR, Zhao Y, Spratt HM, Wiktorowicz JE, Ju H, Wheat LJ, Baden L, Stafford S, Wu Z, Issa N, Caliendo AM, Denning DW, Soman K, Clancy CJ, Nguyen MH, Sugrue MW, Alexander BD, Wingard JR. Improved Detection of Invasive Pulmonary Aspergillosis Arising during Leukemia Treatment Using a Panel of Host Response Proteins and Fungal Antigens. PLoS One 2015; 10:e0143165. [PMID: 26581097 PMCID: PMC4651335 DOI: 10.1371/journal.pone.0143165] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2015] [Accepted: 11/02/2015] [Indexed: 12/03/2022] Open
Abstract
Invasive pulmonary aspergillosis (IPA) is an opportunistic fungal infection in patients undergoing chemotherapy for hematological malignancy, hematopoietic stem cell transplant, or other forms of immunosuppression. In this group, Aspergillus infections account for the majority of deaths due to mold pathogens. Although early detection is associated with improved outcomes, current diagnostic regimens lack sensitivity and specificity. Patients undergoing chemotherapy, stem cell transplantation and lung transplantation were enrolled in a multi-site prospective observational trial. Proven and probable IPA cases and matched controls were subjected to discovery proteomics analyses using a biofluid analysis platform, fractionating plasma into reproducible protein and peptide pools. From 556 spots identified by 2D gel electrophoresis, 66 differentially expressed post-translationally modified plasma proteins were identified in the leukemic subgroup only. This protein group was rich in complement components, acute-phase reactants and coagulation factors. Low molecular weight peptides corresponding to abundant plasma proteins were identified. A candidate marker panel of host response (9 plasma proteins, 4 peptides), fungal polysaccharides (galactomannan), and cell wall components (β-D glucan) were selected by statistical filtering for patients with leukemia as a primary underlying diagnosis. Quantitative measurements were developed to qualify the differential expression of the candidate host response proteins using selective reaction monitoring mass spectrometry assays, and then applied to a separate cohort of 57 patients with leukemia. In this verification cohort, a machine learning ensemble-based algorithm, generalized pathseeker (GPS) produced a greater case classification accuracy than galactomannan (GM) or host proteins alone. In conclusion, Integration of host response proteins with GM improves the diagnostic detection of probable IPA in patients undergoing treatment for hematologic malignancy. Upon further validation, early detection of probable IPA in leukemia treatment will provide opportunities for earlier interventions and interventional clinical trials.
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Affiliation(s)
- Allan R. Brasier
- Department of Internal Medicine, University of Texas Medical Branch (UTMB), Galveston, TX, United States of America
- Institute for Translational Sciences, UTMB, Galveston, TX, United States of America
- Sealy Center for Molecular Medicine, UTMB, Galveston, TX, United States of America
| | - Yingxin Zhao
- Department of Internal Medicine, University of Texas Medical Branch (UTMB), Galveston, TX, United States of America
- Institute for Translational Sciences, UTMB, Galveston, TX, United States of America
- Sealy Center for Molecular Medicine, UTMB, Galveston, TX, United States of America
| | - Heidi M. Spratt
- Institute for Translational Sciences, UTMB, Galveston, TX, United States of America
- Sealy Center for Molecular Medicine, UTMB, Galveston, TX, United States of America
- Department of Preventive Medicine and Community Health, UTMB, Galveston, TX, United States of America
| | - John E. Wiktorowicz
- Institute for Translational Sciences, UTMB, Galveston, TX, United States of America
- Sealy Center for Molecular Medicine, UTMB, Galveston, TX, United States of America
- Department of Biochemistry and Molecular Biology, UTMB, Galveston, TX, United States of America
| | - Hyunsu Ju
- Institute for Translational Sciences, UTMB, Galveston, TX, United States of America
- Department of Preventive Medicine and Community Health, UTMB, Galveston, TX, United States of America
| | - L. Joseph Wheat
- MiraVista Laboratories, Indianapolis, IN, United States of America
| | - Lindsey Baden
- Harvard University, Boston, MA, United States of America
| | - Susan Stafford
- Biomolecular Resource Facility, UTMB, Galveston, TX, United States of America
| | - Zheng Wu
- Biomolecular Resource Facility, UTMB, Galveston, TX, United States of America
| | - Nicolas Issa
- Harvard University, Boston, MA, United States of America
| | | | | | - Kizhake Soman
- Sealy Center for Molecular Medicine, UTMB, Galveston, TX, United States of America
- Department of Biochemistry and Molecular Biology, UTMB, Galveston, TX, United States of America
| | | | - M. Hong Nguyen
- University of Florida, Gainesville, FLA, United States of America
| | | | | | - John R. Wingard
- University of Florida, Gainesville, FLA, United States of America
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Cummings JR, Jamison GR, Boudreaux JW, Howles MJ, Walsh TJ, Hayden RT. Cross-reactivity of non-Aspergillus fungal species in the Aspergillus galactomannan enzyme immunoassay. Diagn Microbiol Infect Dis 2007; 59:113-5. [PMID: 17662550 DOI: 10.1016/j.diagmicrobio.2007.04.022] [Citation(s) in RCA: 89] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2007] [Revised: 04/11/2007] [Accepted: 04/26/2007] [Indexed: 11/23/2022]
Abstract
The Aspergillus galactomannan enzyme-linked immunosorbant assay (EIA) has been demonstrated to facilitate rapid and sensitive detection of invasive aspergillosis. However, test specificity has not been fully evaluated in non-Aspergillus fungal species. Of 53 fungal isolates, cross-reactivity was observed with 5 non-Aspergillus spp.: Blastomyces dermatitidis, Nigrospora oryzae, Paecilomyces lilacinus, Penicillium chrysogenum, and Trichothecium roseum.
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Affiliation(s)
- Jessica R Cummings
- Department of Pathology, St. Jude Children's Research Hospital, Memphis, TN 38103, USA
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Wheat LJ. Antigen detection, serology, and molecular diagnosis of invasive mycoses in the immunocompromised host. Transpl Infect Dis 2006; 8:128-39. [PMID: 16913971 DOI: 10.1111/j.1399-3062.2006.00165.x] [Citation(s) in RCA: 75] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Understanding the uses and limitations of methods for rapid diagnosis of fungal disease is essential in order to diagnose and treat these infections early in their course. Antigen detection methods are useful for diagnosis of aspergillosis, cryptococcosis, histoplasmosis, blastomycosis, paracoccidioidomycosis, and penicilliosis marneffei. The accuracy of the beta-glucan assay for diagnosis of aspergillosis and candidiasis and its role in fungal diagnosis remains unclear, in part because the few published studies report widely varying specificity. Serologic tests for antibodies are also useful for diagnosis of histoplasmosis and coccidioidomycosis, but their sensitivity may be reduced by immunosuppression. While molecular diagnostic methods have been described and are available at some reference and university laboratories, their role in patient care remains uncertain, largely because of the lack of well-characterized assays and studies establishing their accuracy. Culture methods, although essential for establishing the diagnosis in some cases, have limitations for rapid diagnosis, namely insensitivity, need for invasive procedures, and delayed growth.
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Affiliation(s)
- L J Wheat
- MiraVista Diagnostics and Mirabella Technologies, 4444 Decatur Boulevard, Indianapolis, IN 46241, USA.
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