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Statsenko Y, Babushkin V, Talako T, Kurbatova T, Smetanina D, Simiyu GL, Habuza T, Ismail F, Almansoori TM, Gorkom KNV, Szólics M, Hassan A, Ljubisavljevic M. Automatic Detection and Classification of Epileptic Seizures from EEG Data: Finding Optimal Acquisition Settings and Testing Interpretable Machine Learning Approach. Biomedicines 2023; 11:2370. [PMID: 37760815 PMCID: PMC10525492 DOI: 10.3390/biomedicines11092370] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Revised: 07/13/2023] [Accepted: 07/21/2023] [Indexed: 09/29/2023] Open
Abstract
Deep learning (DL) is emerging as a successful technique for automatic detection and differentiation of spontaneous seizures that may otherwise be missed or misclassified. Herein, we propose a system architecture based on top-performing DL models for binary and multigroup classifications with the non-overlapping window technique, which we tested on the TUSZ dataset. The system accurately detects seizure episodes (87.7% Sn, 91.16% Sp) and carefully distinguishes eight seizure types (95-100% Acc). An increase in EEG sampling rate from 50 to 250 Hz boosted model performance: the precision of seizure detection rose by 5%, and seizure differentiation by 7%. A low sampling rate is a reasonable solution for training reliable models with EEG data. Decreasing the number of EEG electrodes from 21 to 8 did not affect seizure detection but worsened seizure differentiation significantly: 98.24 ± 0.17 vs. 85.14 ± 3.14% recall. In detecting epileptic episodes, all electrodes provided equally informative input, but in seizure differentiation, their informative value varied. We improved model explainability with interpretable ML. Activation maximization highlighted the presence of EEG patterns specific to eight seizure types. Cortical projection of epileptic sources depicted differences between generalized and focal seizures. Interpretable ML techniques confirmed that our system recognizes biologically meaningful features as indicators of epileptic activity in EEG.
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Affiliation(s)
- Yauhen Statsenko
- Radiology Department, College of Medicine and Health Sciences, United Arab Emirates University, Al Ain P.O. Box 15551, United Arab Emirates
- Medical Imaging Platform, ASPIRE Precision Medicine Research Institute Abu Dhabi, Al Ain P.O. Box 15551, United Arab Emirates
- Big Data Analytics Center, United Arab Emirates University, Al Ain P.O. Box 15551, United Arab Emirates
| | - Vladimir Babushkin
- Radiology Department, College of Medicine and Health Sciences, United Arab Emirates University, Al Ain P.O. Box 15551, United Arab Emirates
| | - Tatsiana Talako
- Radiology Department, College of Medicine and Health Sciences, United Arab Emirates University, Al Ain P.O. Box 15551, United Arab Emirates
- Department of Oncohematology, Minsk Scientific and Practical Center for Surgery, Transplantology and Hematology, 220089 Minsk, Belarus
| | - Tetiana Kurbatova
- Radiology Department, College of Medicine and Health Sciences, United Arab Emirates University, Al Ain P.O. Box 15551, United Arab Emirates
| | - Darya Smetanina
- Radiology Department, College of Medicine and Health Sciences, United Arab Emirates University, Al Ain P.O. Box 15551, United Arab Emirates
| | - Gillian Lylian Simiyu
- Radiology Department, College of Medicine and Health Sciences, United Arab Emirates University, Al Ain P.O. Box 15551, United Arab Emirates
| | - Tetiana Habuza
- Big Data Analytics Center, United Arab Emirates University, Al Ain P.O. Box 15551, United Arab Emirates
- Department of Computer Science and Software Engineering, College of Information Technology, United Arab Emirates University, Al Ain P.O. Box 15551, United Arab Emirates
| | - Fatima Ismail
- Pediatric Department, College of Medicine and Health Sciences, United Arab Emirates University, Al Ain P.O. Box 15551, United Arab Emirates
| | - Taleb M. Almansoori
- Radiology Department, College of Medicine and Health Sciences, United Arab Emirates University, Al Ain P.O. Box 15551, United Arab Emirates
| | - Klaus N.-V. Gorkom
- Radiology Department, College of Medicine and Health Sciences, United Arab Emirates University, Al Ain P.O. Box 15551, United Arab Emirates
| | - Miklós Szólics
- Neurology Division, Medicine Department, Tawam Hospital, Al Ain P.O. Box 15258, United Arab Emirates
- Internal Medicine Department, College of Medicine and Health Sciences, United Arab Emirates University, Al Ain P.O. Box 15551, United Arab Emirates
| | - Ali Hassan
- Neurology Division, Medicine Department, Tawam Hospital, Al Ain P.O. Box 15258, United Arab Emirates
| | - Milos Ljubisavljevic
- Physiology Department, College of Medicine and Health Sciences, United Arab Emirates University, Al Ain P.O. Box 15551, United Arab Emirates;
- Neuroscience Platform, ASPIRE Precision Medicine Research Institute Abu Dhabi, Al Ain P.O. Box 15551, United Arab Emirates
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Deep-layer motif method for estimating information flow between EEG signals. Cogn Neurodyn 2022; 16:819-831. [PMID: 35847539 PMCID: PMC9279550 DOI: 10.1007/s11571-021-09759-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2021] [Revised: 10/04/2021] [Accepted: 11/22/2021] [Indexed: 11/26/2022] Open
Abstract
Accurate identification for the information flow between epileptic seizure signals is the key to construct the directional epileptic brain network which can be used to localize epileptic focus. In this paper, our concern is on how to improve the direction identification of information flow and also investigate how it can be cut off or weakened. In view of this, we propose the deep-layer motif method. Based on the directional index (DI) estimation using permutation conditional mutual information, the effectiveness of the proposed deep-layer motif method is numerically assessed with the coupled mass neural model. Furthermore, we investigate the robustness of this method in considering the interference of autaptic coupling, time delay and short-term plasticity. Results show that compared to the simple 1-layer motif method, the 2nd- and 3rd-layer motif methods have the dominant enhancement effects for the direction identification. In particular, deep-layer motif method possesses good anti-jamming performance and good robustness in calculating DI. In addition, we investigate the effect of deep brain stimulation (DBS) on the information flow. It is found that this deep-layer motif method is still superior to the single-layer motif method in direction identification and is robust to weak DBS. However, the high-frequency strong DBS can effectively decrease the DI suggesting the weakened information flow. These results may give new insights into the seizure detection and control.
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Chen HH, Shiao HT, Cherkassky V. Online Prediction of Lead Seizures from iEEG Data. Brain Sci 2021; 11:brainsci11121554. [PMID: 34942859 PMCID: PMC8699082 DOI: 10.3390/brainsci11121554] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2021] [Revised: 11/06/2021] [Accepted: 11/23/2021] [Indexed: 11/17/2022] Open
Abstract
We describe a novel system for online prediction of lead seizures from long-term intracranial electroencephalogram (iEEG) recordings for canines with naturally occurring epilepsy. This study adopts new specification of lead seizures, reflecting strong clustering of seizures in observed data. This clustering results in fewer lead seizures (~7 lead seizures per dog), and hence new challenges for online seizure prediction, that are addressed in the proposed system. In particular, the machine learning part of the system is implemented using the group learning method suitable for modeling sparse and noisy seizure data. In addition, several modifications for the proposed system are introduced to cope with the non-stationarity of a noisy iEEG signal. They include: (1) periodic retraining of the SVM classifier using most recent training data; (2) removing samples with noisy labels from training data; and (3) introducing a new adaptive post-processing technique for combining many predictions made for 20 s windows into a single prediction for a 4 h segment. Application of the proposed system requires only two lead seizures for training the initial model, and results in high prediction performance for all four dogs (with mean 0.84 sensitivity, 0.27 time-in-warning, and 0.78 false-positive rate per day). The proposed system achieves accurate prediction of lead seizures during long-term test periods, 3–16 lead seizures during a 169–364 day test period, whereas earlier studies did not differentiate between lead vs. non-lead seizures and used much shorter test periods (~few days long).
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Affiliation(s)
- Hsiang-Han Chen
- Bioinformatics and Computational Biology, University of Minnesota, Minneapolis, MN 55455, USA;
- Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, MN 55455, USA;
- Correspondence:
| | - Han-Tai Shiao
- Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, MN 55455, USA;
| | - Vladimir Cherkassky
- Bioinformatics and Computational Biology, University of Minnesota, Minneapolis, MN 55455, USA;
- Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, MN 55455, USA;
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Liu G, Xiao R, Xu L, Cai J. Minireview of Epilepsy Detection Techniques Based on Electroencephalogram Signals. Front Syst Neurosci 2021; 15:685387. [PMID: 34093143 PMCID: PMC8173051 DOI: 10.3389/fnsys.2021.685387] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2021] [Accepted: 04/20/2021] [Indexed: 12/11/2022] Open
Abstract
Epilepsy is one of the most common neurological disorders typically characterized by recurrent and uncontrollable seizures, which seriously affects the quality of life of epilepsy patients. The effective tool utilized in the clinical diagnosis of epilepsy is the Electroencephalogram (EEG). The emergence of machine learning promotes the development of automated epilepsy detection techniques. New algorithms are continuously introduced to shorten the detection time and improve classification accuracy. This minireview summarized the latest research of epilepsy detection techniques that focused on acquiring, preprocessing, feature extraction, and classification of epileptic EEG signals. The application of seizure prediction and localization based on EEG signals in the diagnosis of epilepsy was also introduced. And then, the future development trend of epilepsy detection technology has prospected at the end of the article.
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Affiliation(s)
- Guangda Liu
- College of Instrumentation and Electrical Engineering, Jilin University, Changchun, China
| | - Ruolan Xiao
- College of Instrumentation and Electrical Engineering, Jilin University, Changchun, China
| | - Lanyu Xu
- College of Instrumentation and Electrical Engineering, Jilin University, Changchun, China
| | - Jing Cai
- College of Instrumentation and Electrical Engineering, Jilin University, Changchun, China
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