1
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Zhou J, Song W, Liu Y, Yuan X. An efficient computational framework for gastrointestinal disorder prediction using attention-based transfer learning. PeerJ Comput Sci 2024; 10:e2059. [PMID: 38855223 PMCID: PMC11157572 DOI: 10.7717/peerj-cs.2059] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2024] [Accepted: 04/23/2024] [Indexed: 06/11/2024]
Abstract
Diagnosing gastrointestinal (GI) disorders, which affect parts of the digestive system such as the stomach and intestines, can be difficult even for experienced gastroenterologists due to the variety of ways these conditions present. Early diagnosis is critical for successful treatment, but the review process is time-consuming and labor-intensive. Computer-aided diagnostic (CAD) methods provide a solution by automating diagnosis, saving time, reducing workload, and lowering the likelihood of missing critical signs. In recent years, machine learning and deep learning approaches have been used to develop many CAD systems to address this issue. However, existing systems need to be improved for better safety and reliability on larger datasets before they can be used in medical diagnostics. In our study, we developed an effective CAD system for classifying eight types of GI images by combining transfer learning with an attention mechanism. Our experimental results show that ConvNeXt is an effective pre-trained network for feature extraction, and ConvNeXt+Attention (our proposed method) is a robust CAD system that outperforms other cutting-edge approaches. Our proposed method had an area under the receiver operating characteristic curve of 0.9997 and an area under the precision-recall curve of 0.9973, indicating excellent performance. The conclusion regarding the effectiveness of the system was also supported by the values of other evaluation metrics.
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Affiliation(s)
- Jiajie Zhou
- Huai’an First People’s Hospital, Nanjing Medical University, Jiangsu, China
| | - Wei Song
- Huai’an First People’s Hospital, Nanjing Medical University, Jiangsu, China
| | - Yeliu Liu
- Huai’an First People’s Hospital, Nanjing Medical University, Jiangsu, China
| | - Xiaoming Yuan
- Huai’an First People’s Hospital, Nanjing Medical University, Jiangsu, China
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2
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Guo H, Somayajula SA, Hosseini R, Xie P. Improving image classification of gastrointestinal endoscopy using curriculum self-supervised learning. Sci Rep 2024; 14:6100. [PMID: 38480815 PMCID: PMC10937990 DOI: 10.1038/s41598-024-53955-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2023] [Accepted: 02/07/2024] [Indexed: 03/17/2024] Open
Abstract
Endoscopy, a widely used medical procedure for examining the gastrointestinal (GI) tract to detect potential disorders, poses challenges in manual diagnosis due to non-specific symptoms and difficulties in accessing affected areas. While supervised machine learning models have proven effective in assisting clinical diagnosis of GI disorders, the scarcity of image-label pairs created by medical experts limits their availability. To address these limitations, we propose a curriculum self-supervised learning framework inspired by human curriculum learning. Our approach leverages the HyperKvasir dataset, which comprises 100k unlabeled GI images for pre-training and 10k labeled GI images for fine-tuning. By adopting our proposed method, we achieved an impressive top-1 accuracy of 88.92% and an F1 score of 73.39%. This represents a 2.1% increase over vanilla SimSiam for the top-1 accuracy and a 1.9% increase for the F1 score. The combination of self-supervised learning and a curriculum-based approach demonstrates the efficacy of our framework in advancing the diagnosis of GI disorders. Our study highlights the potential of curriculum self-supervised learning in utilizing unlabeled GI tract images to improve the diagnosis of GI disorders, paving the way for more accurate and efficient diagnosis in GI endoscopy.
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Affiliation(s)
- Han Guo
- Department of Electrical and Computer Engineering, University of California, San Diego, San Diego, 92093, USA
| | - Sai Ashish Somayajula
- Department of Electrical and Computer Engineering, University of California, San Diego, San Diego, 92093, USA
| | - Ramtin Hosseini
- Department of Electrical and Computer Engineering, University of California, San Diego, San Diego, 92093, USA
| | - Pengtao Xie
- Department of Electrical and Computer Engineering, University of California, San Diego, San Diego, 92093, USA.
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3
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Elshaarawy O, Alboraie M, El-Kassas M. Artificial Intelligence in endoscopy: A future poll. Arab J Gastroenterol 2024; 25:13-17. [PMID: 38220477 DOI: 10.1016/j.ajg.2023.11.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/20/2020] [Revised: 09/18/2022] [Accepted: 11/28/2023] [Indexed: 01/16/2024]
Abstract
Artificial Intelligence [AI] has been a trendy topic in recent years, with many developed medical applications. In gastrointestinal endoscopy, AI systems include computer-assisted detection [CADe] for lesion detection as bleedings and polyps and computer-assisted diagnosis [CADx] for optical biopsy and lesion characterization. The technology behind these systems is based on a computer algorithm that is trained for a specific function. This function could be to recognize or characterize target lesions such as colonic polyps. Moreover, AI systems can offer technical assistance to improve endoscopic performance as scope insertion guidance. Currently, we believe that such technologies still lack legal and regulatory validations as a large sector of doctors and patients have concerns. However, there is no doubt that these technologies will bring significant improvement in the endoscopic management of patients as well as save money and time.
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Affiliation(s)
- Omar Elshaarawy
- Hepatology and Gastroenterology Department, National Liver Institute, Menoufia University, Menoufia, Egypt; Gastroenterology Department, Royal Liverpool University Hospital, NHS, UK
| | - Mohamed Alboraie
- Department of Internal Medicine, Al-Azhar University, Cairo, Egypt
| | - Mohamed El-Kassas
- Endemic Medicine Department, Faculty of Medicine, Helwan University, Cairo, Egypt.
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4
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Sharma A, Kumar R, Garg P. Deep learning-based prediction model for diagnosing gastrointestinal diseases using endoscopy images. Int J Med Inform 2023; 177:105142. [PMID: 37422969 DOI: 10.1016/j.ijmedinf.2023.105142] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2023] [Revised: 07/01/2023] [Accepted: 07/04/2023] [Indexed: 07/11/2023]
Abstract
BACKGROUND Gastrointestinal (GI) infections are quite common today around the world. Colonoscopy or wireless capsule endoscopy (WCE) are noninvasive methods for examining the whole GI tract for abnormalities. Nevertheless, it requires a great deal of time and effort for doctors to visualize a large number of images, and diagnosis is prone to human error. As a result, developing automated artificial intelligence (AI) based GI disease diagnosis methods is a crucial and emerging research area. AI-based prediction models may lead to improvements in the early diagnosis of gastrointestinal disorders, assessing severity, and healthcare systems for the benefit of patients as well as clinicians. The focus of this research is on the early diagnosis of gastrointestinal diseases using a convolution neural network (CNN) to enhance diagnosis accuracy. METHODS Various CNN models (baseline model and using transfer learning (VGG16, InceptionV3, and ResNet50)) were trained on a benchmark image dataset, KVASIR, containing images from inside the GI tract using n-fold cross-validation. The dataset comprises images of three disease states-polyps, ulcerative colitis, and esophagitis-as well as images of the healthy colon. Data augmentation strategies together with statistical measures were used to improve and evaluate the model's performance. Additionally, the test set comprising 1200 images was used to evaluate the model's accuracy and robustness. RESULTS The CNN model using the weights of the ResNet50 pre-trained model achieved the highest average accuracy of approximately 99.80% on the training set (100% precision and approximately 99% recall) and accuracies of 99.50% and 99.16% on the validation and additional test set, respectively, while diagnosing GI diseases. When compared to other existing systems, the proposed ResNet50 model outperforms them all. CONCLUSION The findings of this study indicate that AI-based prediction models using CNNs, specifically ResNet50, can improve diagnostic accuracy for detecting gastrointestinal polyps, ulcerative colitis, and esophagitis. The prediction model is available at https://github.com/anjus02/GI-disease-classification.git.
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Affiliation(s)
- Anju Sharma
- Department of Pharmacoinformatics, National Institute of Pharmaceutical Education and Research, S.A.S. Nagar, Punjab 160062, India
| | - Rajnish Kumar
- Department of Veterinary Medicine and Surgery, College of Veterinary Medicine, University of Missouri, Columbia, MO, USA
| | - Prabha Garg
- Department of Pharmacoinformatics, National Institute of Pharmaceutical Education and Research, S.A.S. Nagar, Punjab 160062, India.
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5
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Sharma N, Gupta S, Reshan MSA, Sulaiman A, Alshahrani H, Shaikh A. EfficientNetB0 cum FPN Based Semantic Segmentation of Gastrointestinal Tract Organs in MRI Scans. Diagnostics (Basel) 2023; 13:2399. [PMID: 37510142 PMCID: PMC10377822 DOI: 10.3390/diagnostics13142399] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2023] [Revised: 07/09/2023] [Accepted: 07/17/2023] [Indexed: 07/30/2023] Open
Abstract
The segmentation of gastrointestinal (GI) organs is crucial in radiation therapy for treating GI cancer. It allows for developing a targeted radiation therapy plan while minimizing radiation exposure to healthy tissue, improving treatment success, and decreasing side effects. Medical diagnostics in GI tract organ segmentation is essential for accurate disease detection, precise differential diagnosis, optimal treatment planning, and efficient disease monitoring. This research presents a hybrid encoder-decoder-based model for segmenting healthy organs in the GI tract in biomedical images of cancer patients, which might help radiation oncologists treat cancer more quickly. Here, EfficientNet B0 is used as a bottom-up encoder architecture for downsampling to capture contextual information by extracting meaningful and discriminative features from input images. The performance of the EfficientNet B0 encoder is compared with that of three encoders: ResNet 50, MobileNet V2, and Timm Gernet. The Feature Pyramid Network (FPN) is a top-down decoder architecture used for upsampling to recover spatial information. The performance of the FPN decoder was compared with that of three decoders: PAN, Linknet, and MAnet. This paper proposes a segmentation model named as the Feature Pyramid Network (FPN), with EfficientNet B0 as the encoder. Furthermore, the proposed hybrid model is analyzed using Adam, Adadelta, SGD, and RMSprop optimizers. Four performance criteria are used to assess the models: the Jaccard and Dice coefficients, model loss, and processing time. The proposed model can achieve Dice coefficient and Jaccard index values of 0.8975 and 0.8832, respectively. The proposed method can assist radiation oncologists in precisely targeting areas hosting cancer cells in the gastrointestinal tract, allowing for more efficient and timely cancer treatment.
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Affiliation(s)
- Neha Sharma
- Chitkara University Institute of Engineering and Technology, Chitkara University, Rajpura 140401, Punjab, India
| | - Sheifali Gupta
- Chitkara University Institute of Engineering and Technology, Chitkara University, Rajpura 140401, Punjab, India
| | - Mana Saleh Al Reshan
- Department of Information Systems, College of Computer Science and Information Systems, Najran University, Najran 61441, Saudi Arabia
| | - Adel Sulaiman
- Department of Computer Science, College of Computer Science and Information Systems, Najran University, Najran 61441, Saudi Arabia
| | - Hani Alshahrani
- Department of Computer Science, College of Computer Science and Information Systems, Najran University, Najran 61441, Saudi Arabia
| | - Asadullah Shaikh
- Department of Information Systems, College of Computer Science and Information Systems, Najran University, Najran 61441, Saudi Arabia
- Scientific and Engineering Research Centre, Najran University, Najran 61441, Saudi Arabia
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6
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Sharma A, Kumar R, Yadav G, Garg P. Artificial intelligence in intestinal polyp and colorectal cancer prediction. Cancer Lett 2023; 565:216238. [PMID: 37211068 DOI: 10.1016/j.canlet.2023.216238] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2023] [Revised: 05/17/2023] [Accepted: 05/17/2023] [Indexed: 05/23/2023]
Abstract
Artificial intelligence (AI) algorithms and their application to disease detection and decision support for healthcare professions have greatly evolved in the recent decade. AI has been widely applied and explored in gastroenterology for endoscopic analysis to diagnose intestinal cancers, premalignant polyps, gastrointestinal inflammatory lesions, and bleeding. Patients' responses to treatments and prognoses have both been predicted using AI by combining multiple algorithms. In this review, we explored the recent applications of AI algorithms in the identification and characterization of intestinal polyps and colorectal cancer predictions. AI-based prediction models have the potential to help medical practitioners diagnose, establish prognoses, and find accurate conclusions for the treatment of patients. With the understanding that rigorous validation of AI approaches using randomized controlled studies is solicited before widespread clinical use by health authorities, the article also discusses the limitations and challenges associated with deploying AI systems to diagnose intestinal malignancies and premalignant lesions.
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Affiliation(s)
- Anju Sharma
- Department of Pharmacoinformatics, National Institute of Pharmaceutical Education and Research, S.A.S Nagar, 160062, Punjab, India
| | - Rajnish Kumar
- Amity Institute of Biotechnology, Amity University Uttar Pradesh, Lucknow Campus, Uttar Pradesh, 226010, India; Department of Veterinary Medicine and Surgery, College of Veterinary Medicine, University of Missouri, Columbia, MO, USA
| | - Garima Yadav
- Amity Institute of Biotechnology, Amity University Uttar Pradesh, Lucknow Campus, Uttar Pradesh, 226010, India
| | - Prabha Garg
- Department of Pharmacoinformatics, National Institute of Pharmaceutical Education and Research, S.A.S Nagar, 160062, Punjab, India.
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7
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A Deep-Learning Approach for Identifying and Classifying Digestive Diseases. Symmetry (Basel) 2023. [DOI: 10.3390/sym15020379] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023] Open
Abstract
The digestive tract, often known as the gastrointestinal (GI) tract or the gastrointestinal system, is affected by digestive ailments. The stomach, large and small intestines, liver, pancreas and gallbladder are all components of the digestive tract. A digestive disease is any illness that affects the digestive system. Serious to moderate conditions can exist. Heartburn, cancer, irritable bowel syndrome (IBS) and lactose intolerance are only a few of the frequent issues. The digestive system may be treated with many different surgical treatments. Laparoscopy, open surgery and endoscopy are a few examples of these techniques. This paper proposes transfer-learning models with different pre-trained models to identify and classify digestive diseases. The proposed systems showed an increase in metrics, such as the accuracy, precision and recall, when compared with other state-of-the-art methods, and EfficientNetB0 achieved the best performance results of 98.01% accuracy, 98% precision and 98% recall.
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8
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Rao HB, Sastry NB, Venu RP, Pattanayak P. The role of artificial intelligence based systems for cost optimization in colorectal cancer prevention programs. Front Artif Intell 2022; 5:955399. [PMID: 36248620 PMCID: PMC9563712 DOI: 10.3389/frai.2022.955399] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2022] [Accepted: 08/16/2022] [Indexed: 11/13/2022] Open
Abstract
Colorectal Cancer (CRC) has seen a dramatic increase in incidence globally. In 2019, colorectal cancer accounted for 1.15 million deaths and 24.28 million disability-adjusted life-years (DALYs) worldwide. In India, the annual incidence rates (AARs) for colon cancer was 4.4 per 100,000. There has been a steady rise in the prevalence of CRC in India which may be attributed to urbanization, mass migration of population, westernization of diet and lifestyle practices and a rise of obesity and metabolic risk factors that place the population at a higher risk of CRC. Moreoever, CRC in India differs from that described in the Western countries, with a higher proportion of young patients and more patients presenting with an advanced stage. This may be due to poor access to specialized healthcare and socio-economic factors. Early identification of adenomatous colonic polyps, which are well-recognized pre-cancerous lesions, at the time of screening colonoscopy has been shown to be the most effective measure used for CRC prevention. However, colonic polyps are frequently missed during colonoscopy and moreover, these screening programs necessitate man-power, time and resources for processing resected polyps, that may hamper penetration and efficacy in mid- to low-income countries. In the last decade, there has been significant progress made in the automatic detection of colonic polyps by multiple AI-based systems. With the advent of better AI methodology, the focus has shifted from mere detection to accurate discrimination and diagnosis of colonic polyps. These systems, once validated, could usher in a new era in Colorectal Cancer (CRC) prevention programs which would center around “Leave in-situ” and “Resect and discard” strategies. These new strategies hinge around the specificity and accuracy of AI based systems in correctly identifying the pathological diagnosis of the polyps, thereby providing the endoscopist with real-time information in order to make a clinical decision of either leaving the lesion in-situ (mucosal polyps) or resecting and discarding the polyp (hyperplastic polyps). The major advantage of employing these strategies would be in cost optimization of CRC prevention programs while ensuring good clinical outcomes. The adoption of these AI-based systems in the national cancer prevention program of India in accordance with the mandate to increase technology integration could prove to be cost-effective and enable implementation of CRC prevention programs at the population level. This level of penetration could potentially reduce the incidence of CRC and improve patient survival by enabling early diagnosis and treatment. In this review, we will highlight key advancements made in the field of AI in the identification of polyps during colonoscopy and explore the role of AI based systems in cost optimization during the universal implementation of CRC prevention programs in the context of mid-income countries like India.
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Affiliation(s)
- Harshavardhan B. Rao
- Department of Gastroenterology, M.S. Ramaiah Medical College, Ramaiah University of Applied Sciences, Bangalore, Karnataka, India
- *Correspondence: Harshavardhan B. Rao
| | - Nandakumar Bidare Sastry
- Department of Gastroenterology, M.S. Ramaiah Medical College, Ramaiah University of Applied Sciences, Bangalore, Karnataka, India
| | - Rama P. Venu
- Department of Gastroenterology, Amrita Institute of Medical Sciences and Research Centre, Kochi, Kerala, India
| | - Preetiparna Pattanayak
- Department of Gastroenterology, M.S. Ramaiah Medical College, Ramaiah University of Applied Sciences, Bangalore, Karnataka, India
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9
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Ramzan M, Raza M, Sharif MI, Kadry S. Gastrointestinal Tract Polyp Anomaly Segmentation on Colonoscopy Images Using Graft-U-Net. J Pers Med 2022; 12:jpm12091459. [PMID: 36143244 PMCID: PMC9503374 DOI: 10.3390/jpm12091459] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2022] [Revised: 08/28/2022] [Accepted: 09/01/2022] [Indexed: 11/21/2022] Open
Abstract
Computer-aided polyp segmentation is a crucial task that supports gastroenterologists in examining and resecting anomalous tissue in the gastrointestinal tract. The disease polyps grow mainly in the colorectal area of the gastrointestinal tract and in the mucous membrane, which has protrusions of micro-abnormal tissue that increase the risk of incurable diseases such as cancer. So, the early examination of polyps can decrease the chance of the polyps growing into cancer, such as adenomas, which can change into cancer. Deep learning-based diagnostic systems play a vital role in diagnosing diseases in the early stages. A deep learning method, Graft-U-Net, is proposed to segment polyps using colonoscopy frames. Graft-U-Net is a modified version of UNet, which comprises three stages, including the preprocessing, encoder, and decoder stages. The preprocessing technique is used to improve the contrast of the colonoscopy frames. Graft-U-Net comprises encoder and decoder blocks where the encoder analyzes features, while the decoder performs the features’ synthesizing processes. The Graft-U-Net model offers better segmentation results than existing deep learning models. The experiments were conducted using two open-access datasets, Kvasir-SEG and CVC-ClinicDB. The datasets were prepared from the large bowel of the gastrointestinal tract by performing a colonoscopy procedure. The anticipated model outperforms in terms of its mean Dice of 96.61% and mean Intersection over Union (mIoU) of 82.45% with the Kvasir-SEG dataset. Similarly, with the CVC-ClinicDB dataset, the method achieved a mean Dice of 89.95% and an mIoU of 81.38%.
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Affiliation(s)
- Muhammad Ramzan
- Department of Computer Science, COMSATS University Islamabad, Wah Campus, Islamabad 47040, Pakistan
| | - Mudassar Raza
- Department of Computer Science, COMSATS University Islamabad, Wah Campus, Islamabad 47040, Pakistan
- Correspondence:
| | - Muhammad Imran Sharif
- Department of Computer Science, COMSATS University Islamabad, Wah Campus, Islamabad 47040, Pakistan
| | - Seifedine Kadry
- Department of Applied Data Science, Noroff University College, 4612 Kristiansand, Norway
- Department of Electrical and Computer Engineering, Lebanese American University, Byblos 999095, Lebanon
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10
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Efficient Synchronous Real-Time CADe for Multicategory Lesions in Gastroscopy by Using Multiclass Detection Model. BIOMED RESEARCH INTERNATIONAL 2022; 2022:8504149. [PMID: 36093395 PMCID: PMC9453014 DOI: 10.1155/2022/8504149] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/02/2022] [Accepted: 07/21/2022] [Indexed: 11/17/2022]
Abstract
Often more than one category of lesions in patients’ gastrointestinal tracts need to be found in the endoscopic examination. Therefore, there is a need to establish an efficient synchronous real-time computer-aided detection (CADe) system for multicategory lesion detection. This paper proposes to build a system with a multiclass detection model based on the YOLOv5 to detect multicategory lesions synchronously in real-time. Two joint detection CADe systems using multiple single-class detection models with the same structure in parallel or series are established for comparison. A retrospective dataset containing 31117 images from 3747 patients is used in this study. To train the model, various online data augmentation methods and multiple loss functions are used. The proposed CADe system can synchronously detect cancers, gastrointestinal stromal tumours, polyps, and ulcers from different quality input images with 98% precision, 89% recall, and 90.2% mAP. The detection speed is 47 frames per second with a 0.04 s latency on a PC workstation. Compared to the two joint detection CADe systems, the proposed system is more accurate with faster speed and lower latency. Two extra experiments indicated that the lesion detection model based on YOLOv5x could provide better performance than other common YOLO structures and that different accuracy metrics and lesion categories have different requirements for the number of training images. The proposed synchronous real-time CADe system with the multiclass detection model can detect multicategory lesions with high accuracy and speed and low latency on limited hardware. It expands the clinical application of CADe in endoscopy and uses expensive labelled medical images more efficiently than multiple single-category lesion models for joint detection.
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11
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Tavanapong W, Oh J, Riegler MA, Khaleel M, Mittal B, de Groen PC. Artificial Intelligence for Colonoscopy: Past, Present, and Future. IEEE J Biomed Health Inform 2022; 26:3950-3965. [PMID: 35316197 PMCID: PMC9478992 DOI: 10.1109/jbhi.2022.3160098] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
During the past decades, many automated image analysis methods have been developed for colonoscopy. Real-time implementation of the most promising methods during colonoscopy has been tested in clinical trials, including several recent multi-center studies. All trials have shown results that may contribute to prevention of colorectal cancer. We summarize the past and present development of colonoscopy video analysis methods, focusing on two categories of artificial intelligence (AI) technologies used in clinical trials. These are (1) analysis and feedback for improving colonoscopy quality and (2) detection of abnormalities. Our survey includes methods that use traditional machine learning algorithms on carefully designed hand-crafted features as well as recent deep-learning methods. Lastly, we present the gap between current state-of-the-art technology and desirable clinical features and conclude with future directions of endoscopic AI technology development that will bridge the current gap.
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12
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Rao B H, Trieu JA, Nair P, Gressel G, Venu M, Venu RP. Artificial intelligence in endoscopy: More than what meets the eye in screening colonoscopy and endosonographic evaluation of pancreatic lesions. Artif Intell Gastrointest Endosc 2022; 3:16-30. [DOI: 10.37126/aige.v3.i3.16] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/30/2021] [Revised: 03/07/2022] [Accepted: 05/07/2022] [Indexed: 02/06/2023] Open
Abstract
Artificial intelligence (AI)-based tools have ushered in a new era of innovation in the field of gastrointestinal (GI) endoscopy. Despite vast improvements in endoscopic techniques and equipment, diagnostic endoscopy remains heavily operator-dependent, in particular, colonoscopy and endoscopic ultrasound (EUS). Recent reports have shown that as much as 25% of colonic adenomas may be missed at colonoscopy. This can result in an increased incidence of interval colon cancer. Similarly, EUS has been shown to have high inter-observer variability, overlap in diagnoses with a relatively low specificity for pancreatic lesions. Our understanding of Machine-learning (ML) techniques in AI have evolved over the last decade and its application in AI–based tools for endoscopic detection and diagnosis is being actively investigated at several centers. ML is an aspect of AI that is based on neural networks, and is widely used for image classification, object detection, and semantic segmentation which are key functional aspects of AI-related computer aided diagnostic systems. In this review, current status and limitations of ML, specifically for adenoma detection and endosonographic diagnosis of pancreatic lesions, will be summarized from existing literature. This will help to better understand its role as viewed through the prism of real world application in the field of GI endoscopy.
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Affiliation(s)
- Harshavardhan Rao B
- Department of Gastroenterology, Amrita Institute of Medical Sciences, Kochi 682041, Kerala, India
| | - Judy A Trieu
- Internal Medicine - Gastroenterology, Loyola University Medical Center, Maywood, IL 60153, United States
| | - Priya Nair
- Department of Gastroenterology, Amrita Institute of Medical Sciences, Kochi 682041, Kerala, India
| | - Gilad Gressel
- Center for Cyber Security Systems and Networks, Amrita Vishwavidyapeetham, Kollam 690546, Kerala, India
| | - Mukund Venu
- Internal Medicine - Gastroenterology, Loyola University Medical Center, Maywood, IL 60153, United States
| | - Rama P Venu
- Department of Gastroenterology, Amrita Institute of Medical Sciences, Kochi 682041, Kerala, India
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13
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Wang YP, Jheng YC, Sung KY, Lin HE, Hsin IF, Chen PH, Chu YC, Lu D, Wang YJ, Hou MC, Lee FY, Lu CL. Use of U-Net Convolutional Neural Networks for Automated Segmentation of Fecal Material for Objective Evaluation of Bowel Preparation Quality in Colonoscopy. Diagnostics (Basel) 2022; 12:diagnostics12030613. [PMID: 35328166 PMCID: PMC8947406 DOI: 10.3390/diagnostics12030613] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2022] [Revised: 02/22/2022] [Accepted: 02/24/2022] [Indexed: 12/29/2022] Open
Abstract
Background: Adequate bowel cleansing is important for colonoscopy performance evaluation. Current bowel cleansing evaluation scales are subjective, with a wide variation in consistency among physicians and low reported rates of accuracy. We aim to use machine learning to develop a fully automatic segmentation method for the objective evaluation of the adequacy of colon preparation. Methods: Colonoscopy videos were retrieved from a video data cohort and transferred to qualified images, which were randomly divided into training, validation, and verification datasets. The fecal residue was manually segmented. A deep learning model based on the U-Net convolutional network architecture was developed to perform automatic segmentation. The performance of the automatic segmentation was evaluated on the overlap area with the manual segmentation. Results: A total of 10,118 qualified images from 119 videos were obtained. The model averaged 0.3634 s to segmentate one image automatically. The models produced a strong high-overlap area with manual segmentation, with 94.7% ± 0.67% of that area predicted by our AI model, which correlated well with the area measured manually (r = 0.915, p < 0.001). The AI system can be applied in real-time qualitatively and quantitatively. Conclusions: We established a fully automatic segmentation method to rapidly and accurately mark the fecal residue-coated mucosa for the objective evaluation of colon preparation.
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Affiliation(s)
- Yen-Po Wang
- Endoscopy Center for Diagnosis and Treatment, Department of Medicine, Taipei Veterans General Hospital, Taipei 112, Taiwan; (Y.-P.W.); (Y.-C.J.); (K.-Y.S.); (H.-E.L.); (I.-F.H.); (P.-H.C.); (D.L.); (M.-C.H.)
- Division of Gastroenterology, Department of Medicine, Taipei Veterans General Hospital, Taipei 112, Taiwan;
- Institute of Brain Science, National Yang Ming Chiao Tung University School of Medicine, Taipei 112, Taiwan
- Faculty of Medicine, National Yang Ming Chiao Tung University School of Medicine, Taipei 112, Taiwan;
| | - Ying-Chun Jheng
- Endoscopy Center for Diagnosis and Treatment, Department of Medicine, Taipei Veterans General Hospital, Taipei 112, Taiwan; (Y.-P.W.); (Y.-C.J.); (K.-Y.S.); (H.-E.L.); (I.-F.H.); (P.-H.C.); (D.L.); (M.-C.H.)
- Faculty of Medicine, National Yang Ming Chiao Tung University School of Medicine, Taipei 112, Taiwan;
- Department of Medical Research, Taipei Veterans General Hospital, Taipei 112, Taiwan
| | - Kuang-Yi Sung
- Endoscopy Center for Diagnosis and Treatment, Department of Medicine, Taipei Veterans General Hospital, Taipei 112, Taiwan; (Y.-P.W.); (Y.-C.J.); (K.-Y.S.); (H.-E.L.); (I.-F.H.); (P.-H.C.); (D.L.); (M.-C.H.)
- Division of Gastroenterology, Department of Medicine, Taipei Veterans General Hospital, Taipei 112, Taiwan;
- Faculty of Medicine, National Yang Ming Chiao Tung University School of Medicine, Taipei 112, Taiwan;
| | - Hung-En Lin
- Endoscopy Center for Diagnosis and Treatment, Department of Medicine, Taipei Veterans General Hospital, Taipei 112, Taiwan; (Y.-P.W.); (Y.-C.J.); (K.-Y.S.); (H.-E.L.); (I.-F.H.); (P.-H.C.); (D.L.); (M.-C.H.)
- Division of Gastroenterology, Department of Medicine, Taipei Veterans General Hospital, Taipei 112, Taiwan;
- Faculty of Medicine, National Yang Ming Chiao Tung University School of Medicine, Taipei 112, Taiwan;
| | - I-Fang Hsin
- Endoscopy Center for Diagnosis and Treatment, Department of Medicine, Taipei Veterans General Hospital, Taipei 112, Taiwan; (Y.-P.W.); (Y.-C.J.); (K.-Y.S.); (H.-E.L.); (I.-F.H.); (P.-H.C.); (D.L.); (M.-C.H.)
- Division of Gastroenterology, Department of Medicine, Taipei Veterans General Hospital, Taipei 112, Taiwan;
- Faculty of Medicine, National Yang Ming Chiao Tung University School of Medicine, Taipei 112, Taiwan;
| | - Ping-Hsien Chen
- Endoscopy Center for Diagnosis and Treatment, Department of Medicine, Taipei Veterans General Hospital, Taipei 112, Taiwan; (Y.-P.W.); (Y.-C.J.); (K.-Y.S.); (H.-E.L.); (I.-F.H.); (P.-H.C.); (D.L.); (M.-C.H.)
- Division of Gastroenterology, Department of Medicine, Taipei Veterans General Hospital, Taipei 112, Taiwan;
- Faculty of Medicine, National Yang Ming Chiao Tung University School of Medicine, Taipei 112, Taiwan;
| | - Yuan-Chia Chu
- Information Management Office, Taipei Veterans General Hospital, Taipei 112, Taiwan;
- Big Data Center, Taipei Veterans General Hospital, Taipei 112, Taiwan
- Department of Information Management, National Taipei University of Nursing and Health Sciences, Taipei 112, Taiwan
| | - David Lu
- Endoscopy Center for Diagnosis and Treatment, Department of Medicine, Taipei Veterans General Hospital, Taipei 112, Taiwan; (Y.-P.W.); (Y.-C.J.); (K.-Y.S.); (H.-E.L.); (I.-F.H.); (P.-H.C.); (D.L.); (M.-C.H.)
| | - Yuan-Jen Wang
- Faculty of Medicine, National Yang Ming Chiao Tung University School of Medicine, Taipei 112, Taiwan;
- Healthcare and Management Center, Taipei Veterans General Hospital, Taipei 112, Taiwan
| | - Ming-Chih Hou
- Endoscopy Center for Diagnosis and Treatment, Department of Medicine, Taipei Veterans General Hospital, Taipei 112, Taiwan; (Y.-P.W.); (Y.-C.J.); (K.-Y.S.); (H.-E.L.); (I.-F.H.); (P.-H.C.); (D.L.); (M.-C.H.)
- Division of Gastroenterology, Department of Medicine, Taipei Veterans General Hospital, Taipei 112, Taiwan;
- Faculty of Medicine, National Yang Ming Chiao Tung University School of Medicine, Taipei 112, Taiwan;
| | - Fa-Yauh Lee
- Division of Gastroenterology, Department of Medicine, Taipei Veterans General Hospital, Taipei 112, Taiwan;
- Faculty of Medicine, National Yang Ming Chiao Tung University School of Medicine, Taipei 112, Taiwan;
| | - Ching-Liang Lu
- Endoscopy Center for Diagnosis and Treatment, Department of Medicine, Taipei Veterans General Hospital, Taipei 112, Taiwan; (Y.-P.W.); (Y.-C.J.); (K.-Y.S.); (H.-E.L.); (I.-F.H.); (P.-H.C.); (D.L.); (M.-C.H.)
- Division of Gastroenterology, Department of Medicine, Taipei Veterans General Hospital, Taipei 112, Taiwan;
- Institute of Brain Science, National Yang Ming Chiao Tung University School of Medicine, Taipei 112, Taiwan
- Faculty of Medicine, National Yang Ming Chiao Tung University School of Medicine, Taipei 112, Taiwan;
- Correspondence: ; Tel.: +886-2-2875-7272
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14
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Artificial Intelligence in Gastroenterology. Artif Intell Med 2022. [DOI: 10.1007/978-3-030-58080-3_163-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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15
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Strümke I, Hicks SA, Thambawita V, Jha D, Parasa S, Riegler MA, Halvorsen P. Artificial Intelligence in Gastroenterology. Artif Intell Med 2022. [DOI: 10.1007/978-3-030-64573-1_163] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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16
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Taghiakbari M, Mori Y, von Renteln D. Artificial intelligence-assisted colonoscopy: A review of current state of practice and research. World J Gastroenterol 2021; 27:8103-8122. [PMID: 35068857 PMCID: PMC8704267 DOI: 10.3748/wjg.v27.i47.8103] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/19/2021] [Revised: 08/22/2021] [Accepted: 12/08/2021] [Indexed: 02/06/2023] Open
Abstract
Colonoscopy is an effective screening procedure in colorectal cancer prevention programs; however, colonoscopy practice can vary in terms of lesion detection, classification, and removal. Artificial intelligence (AI)-assisted decision support systems for endoscopy is an area of rapid research and development. The systems promise improved detection, classification, screening, and surveillance for colorectal polyps and cancer. Several recently developed applications for AI-assisted colonoscopy have shown promising results for the detection and classification of colorectal polyps and adenomas. However, their value for real-time application in clinical practice has yet to be determined owing to limitations in the design, validation, and testing of AI models under real-life clinical conditions. Despite these current limitations, ambitious attempts to expand the technology further by developing more complex systems capable of assisting and supporting the endoscopist throughout the entire colonoscopy examination, including polypectomy procedures, are at the concept stage. However, further work is required to address the barriers and challenges of AI integration into broader colonoscopy practice, to navigate the approval process from regulatory organizations and societies, and to support physicians and patients on their journey to accepting the technology by providing strong evidence of its accuracy and safety. This article takes a closer look at the current state of AI integration into the field of colonoscopy and offers suggestions for future research.
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Affiliation(s)
- Mahsa Taghiakbari
- Department of Gastroenterology, CRCHUM, Montreal H2X 0A9, Quebec, Canada
| | - Yuichi Mori
- Clinical Effectiveness Research Group, University of Oslo, Oslo 0450, Norway
- Digestive Disease Center, Showa University Northern Yokohama Hospital, Yokohama 224-8503, Japan
| | - Daniel von Renteln
- Department of Gastroenterology, CRCHUM, Montreal H2X 0A9, Quebec, Canada
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17
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Hardy NP, Mac Aonghusa P, Neary PM, Cahill RA. Intraprocedural Artificial Intelligence for Colorectal Cancer Detection and Characterisation in Endoscopy and Laparoscopy. Surg Innov 2021; 28:768-775. [PMID: 33634722 PMCID: PMC8647474 DOI: 10.1177/1553350621997761] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
In this article, we provide an evidence-based primer of current tools and evolving concepts in the area of intraprocedural artificial intelligence (AI) methods in colonoscopy and laparoscopy as a 'procedure companion', with specific focus on colorectal cancer recognition and characterisation. These interventions are both likely beneficiaries from an impending rapid phase in technical and technological evolution. The domains where AI is most likely to impact are explored as well as the methodological pitfalls pertaining to AI methods. Such issues include the need for large volumes of data to train AI systems, questions surrounding false positive rates, explainability and interpretability as well as recent concerns surrounding instabilities in current deep learning (DL) models. The area of biophysics-inspired models, a potential remedy to some of these pitfalls, is explored as it could allow our understanding of the fundamental physiological differences between tissue types to be exploited in real time with the help of computer-assisted interpretation. Right now, such models can include data collected from dynamic fluorescence imaging in surgery to characterise lesions by their biology reducing the number of cases needed to build a reliable and interpretable classification system. Furthermore, instead of focussing on image-by-image analysis, such systems could analyse in a continuous fashion, more akin to how we view procedures in real life and make decisions in a manner more comparable to human decision-making. Synergistical approaches can ensure AI methods usefully embed within practice thus safeguarding against collapse of this exciting field of investigation as another 'boom and bust' cycle of AI endeavour.
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Affiliation(s)
- Niall P Hardy
- UCD Centre for Precision Surgery, School of
Medicine, University College Dublin, Dublin, Ireland
| | | | - Peter M Neary
- Department of Surgery, University College
Cork, University Hospital Waterford, Waterford, Ireland
| | - Ronan A Cahill
- UCD Centre for Precision Surgery, School of
Medicine, University College Dublin, Dublin, Ireland
- Department of Surgery, Mater Misericordiae University
Hospital, Dublin, Ireland
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18
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Glissen Brown JR, Berzin TM. Adoption of New Technologies: Artificial Intelligence. Gastrointest Endosc Clin N Am 2021; 31:743-758. [PMID: 34538413 DOI: 10.1016/j.giec.2021.05.010] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Over the past decade, artificial intelligence (AI) has been broadly applied to many aspects of human life, with recent groundbreaking successes in facial recognition, natural language processing, autonomous driving, and medical imaging. Gastroenterology has applied AI to a vast array of clinical problems, and some of the earliest prospective trials examining AI in medicine have been in computer vision applied to endoscopy. Evidence is mounting for 2 broad areas of AI as applied to gastroenterology: computer-aided detection and computer-aided diagnosis.
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Affiliation(s)
- Jeremy R Glissen Brown
- Center for Advanced Endoscopy, Division of Gastroenterology and Hepatology, Beth Israel Deaconess Medical Center and Harvard Medical School, 330 Brookline Avenue, Boston, MA 02130, USA.
| | - Tyler M Berzin
- Center for Advanced Endoscopy, Division of Gastroenterology and Hepatology, Beth Israel Deaconess Medical Center and Harvard Medical School, 330 Brookline Avenue, Boston, MA 02130, USA
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19
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Pecere S, Milluzzo SM, Esposito G, Dilaghi E, Telese A, Eusebi LH. Applications of Artificial Intelligence for the Diagnosis of Gastrointestinal Diseases. Diagnostics (Basel) 2021; 11:diagnostics11091575. [PMID: 34573917 PMCID: PMC8469485 DOI: 10.3390/diagnostics11091575] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2021] [Revised: 08/20/2021] [Accepted: 08/23/2021] [Indexed: 12/16/2022] Open
Abstract
The development of convolutional neural networks has achieved impressive advances of machine learning in recent years, leading to an increasing use of artificial intelligence (AI) in the field of gastrointestinal (GI) diseases. AI networks have been trained to differentiate benign from malignant lesions, analyze endoscopic and radiological GI images, and assess histological diagnoses, obtaining excellent results and high overall diagnostic accuracy. Nevertheless, there data are lacking on side effects of AI in the gastroenterology field, and high-quality studies comparing the performance of AI networks to health care professionals are still limited. Thus, large, controlled trials in real-time clinical settings are warranted to assess the role of AI in daily clinical practice. This narrative review gives an overview of some of the most relevant potential applications of AI for gastrointestinal diseases, highlighting advantages and main limitations and providing considerations for future development.
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Affiliation(s)
- Silvia Pecere
- Digestive Endoscopy Unit, Fondazione Policlinico Universitario A. Gemelli IRCCS, Università Cattolica del Sacro Cuore, 00135 Rome, Italy;
- Center for Endoscopic Research Therapeutics and Training (CERTT), Catholic University, 00168 Rome, Italy
- Correspondence: (S.P.); (L.H.E.)
| | - Sebastian Manuel Milluzzo
- Digestive Endoscopy Unit, Fondazione Policlinico Universitario A. Gemelli IRCCS, Università Cattolica del Sacro Cuore, 00135 Rome, Italy;
- Fondazione Poliambulanza Istituto Ospedaliero, 25121 Brescia, Italy
| | - Gianluca Esposito
- Department of Medical-Surgical Sciences and Translational Medicine, Sant’Andrea Hospital, Sapienza University of Rome, 00168 Rome, Italy; (G.E.); (E.D.)
| | - Emanuele Dilaghi
- Department of Medical-Surgical Sciences and Translational Medicine, Sant’Andrea Hospital, Sapienza University of Rome, 00168 Rome, Italy; (G.E.); (E.D.)
| | - Andrea Telese
- Department of Gastroenterology, University College London Hospital (UCLH), London NW1 2AF, UK;
| | - Leonardo Henry Eusebi
- Division of Gastroenterology and Endoscopy, IRCCS Azienda Ospedaliero-Universitaria di Bologna, 40121 Bologna, Italy
- Department of Medical and Surgical Sciences, University of Bologna, 40121 Bologna, Italy
- Correspondence: (S.P.); (L.H.E.)
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20
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Yoo BS, D'Souza SM, Houston K, Patel A, Lau J, Elmahdi A, Parekh PJ, Johnson D. Artificial intelligence and colonoscopy − enhancements and improvements. Artif Intell Gastrointest Endosc 2021; 2:157-167. [DOI: 10.37126/aige.v2.i4.157] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/05/2021] [Revised: 06/21/2021] [Accepted: 07/23/2021] [Indexed: 02/06/2023] Open
Abstract
Artificial intelligence is a technology that processes and analyzes information with reproducibility and accuracy. Its application in medicine, especially in the field of gastroenterology, has great potential to facilitate in diagnosis of various disease states. Currently, the role of artificial intelligence as it pertains to colonoscopy revolves around enhanced polyp detection and characterization. The aim of this article is to review the current and potential future applications of artificial intelligence for enhanced quality of detection for colorectal neoplasia.
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Affiliation(s)
- Byung Soo Yoo
- Department of Medicine, Eastern Virginia Medical School, Norfolk, VA 23507, United States
| | - Steve M D'Souza
- Department of Medicine, Eastern Virginia Medical School, Norfolk, VA 23507, United States
| | - Kevin Houston
- Department of Medicine, Eastern Virginia Medical School, Norfolk, VA 23507, United States
| | - Ankit Patel
- Department of Medicine, Eastern Virginia Medical School, Norfolk, VA 23507, United States
| | - James Lau
- Department of Medicine, Eastern Virginia Medical School, Norfolk, VA 23507, United States
| | - Alsiddig Elmahdi
- Department of Medicine, Eastern Virginia Medical School, Norfolk, VA 23507, United States
| | - Parth J Parekh
- Division of Gastroenterology, Department of Internal Medicine, Eastern Virginia Medical School, Norfolk, VA 23505, United States
| | - David Johnson
- Division of Gastroenterology, Department of Internal Medicine, Eastern Virginia Medical School, Norfolk, VA 23505, United States
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21
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Song YQ, Mao XL, Zhou XB, He SQ, Chen YH, Zhang LH, Xu SW, Yan LL, Tang SP, Ye LP, Li SW. Use of Artificial Intelligence to Improve the Quality Control of Gastrointestinal Endoscopy. Front Med (Lausanne) 2021; 8:709347. [PMID: 34368199 PMCID: PMC8339701 DOI: 10.3389/fmed.2021.709347] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2021] [Accepted: 06/29/2021] [Indexed: 12/04/2022] Open
Abstract
With the rapid development of science and technology, artificial intelligence (AI) systems are becoming ubiquitous, and their utility in gastroenteroscopy is beginning to be recognized. Digestive endoscopy is a conventional and reliable method of examining and diagnosing digestive tract diseases. However, with the increase in the number and types of endoscopy, problems such as a lack of skilled endoscopists and difference in the professional skill of doctors with different degrees of experience have become increasingly apparent. Most studies thus far have focused on using computers to detect and diagnose lesions, but improving the quality of endoscopic examination process itself is the basis for improving the detection rate and correctly diagnosing diseases. In the present study, we mainly reviewed the role of AI in monitoring systems, mainly through the endoscopic examination time, reducing the blind spot rate, improving the success rate for detecting high-risk lesions, evaluating intestinal preparation, increasing the detection rate of polyps, automatically collecting maps and writing reports. AI can even perform quality control evaluations for endoscopists, improve the detection rate of endoscopic lesions and reduce the burden on endoscopists.
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Affiliation(s)
- Ya-Qi Song
- Taizhou Hospital, Zhejiang University, Linhai, China
| | - Xin-Li Mao
- Key Laboratory of Minimally Invasive Techniques and Rapid Rehabilitation of Digestive System Tumor of Zhejiang Province, Taizhou Hospital Affiliated to Wenzhou Medical University, Linhai, China.,Department of Gastroenterology, Taizhou Hospital of Zhejiang Province Affiliated to Wenzhou Medical University, Linhai, China
| | - Xian-Bin Zhou
- Key Laboratory of Minimally Invasive Techniques and Rapid Rehabilitation of Digestive System Tumor of Zhejiang Province, Taizhou Hospital Affiliated to Wenzhou Medical University, Linhai, China.,Department of Gastroenterology, Taizhou Hospital of Zhejiang Province Affiliated to Wenzhou Medical University, Linhai, China
| | - Sai-Qin He
- Key Laboratory of Minimally Invasive Techniques and Rapid Rehabilitation of Digestive System Tumor of Zhejiang Province, Taizhou Hospital Affiliated to Wenzhou Medical University, Linhai, China.,Department of Gastroenterology, Taizhou Hospital of Zhejiang Province Affiliated to Wenzhou Medical University, Linhai, China
| | - Ya-Hong Chen
- Health Management Center, Taizhou Hospital of Zhejiang Province Affiliated to Wenzhou Medical University, Linhai, China
| | - Li-Hui Zhang
- Department of Gastroenterology, Renmin Hospital of Wuhan University, Wuhan, China
| | - Shi-Wen Xu
- Taizhou Hospital of Zhejiang Province Affiliated to Wenzhou Medical University, Linhai, China
| | - Ling-Ling Yan
- Key Laboratory of Minimally Invasive Techniques and Rapid Rehabilitation of Digestive System Tumor of Zhejiang Province, Taizhou Hospital Affiliated to Wenzhou Medical University, Linhai, China.,Department of Gastroenterology, Taizhou Hospital of Zhejiang Province Affiliated to Wenzhou Medical University, Linhai, China
| | - Shen-Ping Tang
- Taizhou Hospital of Zhejiang Province Affiliated to Wenzhou Medical University, Linhai, China
| | - Li-Ping Ye
- Taizhou Hospital, Zhejiang University, Linhai, China.,Key Laboratory of Minimally Invasive Techniques and Rapid Rehabilitation of Digestive System Tumor of Zhejiang Province, Taizhou Hospital Affiliated to Wenzhou Medical University, Linhai, China.,Department of Gastroenterology, Taizhou Hospital of Zhejiang Province Affiliated to Wenzhou Medical University, Linhai, China.,Institute of Digestive Disease, Taizhou Hospital of Zhejiang Province Affiliated to Wenzhou Medical University, Linhai, China
| | - Shao-Wei Li
- Key Laboratory of Minimally Invasive Techniques and Rapid Rehabilitation of Digestive System Tumor of Zhejiang Province, Taizhou Hospital Affiliated to Wenzhou Medical University, Linhai, China.,Department of Gastroenterology, Taizhou Hospital of Zhejiang Province Affiliated to Wenzhou Medical University, Linhai, China.,Institute of Digestive Disease, Taizhou Hospital of Zhejiang Province Affiliated to Wenzhou Medical University, Linhai, China
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22
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Nazarian S, Glover B, Ashrafian H, Darzi A, Teare J. Diagnostic Accuracy of Artificial Intelligence and Computer-Aided Diagnosis for the Detection and Characterization of Colorectal Polyps: Systematic Review and Meta-analysis. J Med Internet Res 2021; 23:e27370. [PMID: 34259645 PMCID: PMC8319784 DOI: 10.2196/27370] [Citation(s) in RCA: 30] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2021] [Revised: 03/09/2021] [Accepted: 05/06/2021] [Indexed: 12/15/2022] Open
Abstract
BACKGROUND Colonoscopy reduces the incidence of colorectal cancer (CRC) by allowing detection and resection of neoplastic polyps. Evidence shows that many small polyps are missed on a single colonoscopy. There has been a successful adoption of artificial intelligence (AI) technologies to tackle the issues around missed polyps and as tools to increase the adenoma detection rate (ADR). OBJECTIVE The aim of this review was to examine the diagnostic accuracy of AI-based technologies in assessing colorectal polyps. METHODS A comprehensive literature search was undertaken using the databases of Embase, MEDLINE, and the Cochrane Library. PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-Analyses) guidelines were followed. Studies reporting the use of computer-aided diagnosis for polyp detection or characterization during colonoscopy were included. Independent proportions and their differences were calculated and pooled through DerSimonian and Laird random-effects modeling. RESULTS A total of 48 studies were included. The meta-analysis showed a significant increase in pooled polyp detection rate in patients with the use of AI for polyp detection during colonoscopy compared with patients who had standard colonoscopy (odds ratio [OR] 1.75, 95% CI 1.56-1.96; P<.001). When comparing patients undergoing colonoscopy with the use of AI to those without, there was also a significant increase in ADR (OR 1.53, 95% CI 1.32-1.77; P<.001). CONCLUSIONS With the aid of machine learning, there is potential to improve ADR and, consequently, reduce the incidence of CRC. The current generation of AI-based systems demonstrate impressive accuracy for the detection and characterization of colorectal polyps. However, this is an evolving field and before its adoption into a clinical setting, AI systems must prove worthy to patients and clinicians. TRIAL REGISTRATION PROSPERO International Prospective Register of Systematic Reviews CRD42020169786; https://www.crd.york.ac.uk/prospero/display_record.php?ID=CRD42020169786.
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Affiliation(s)
- Scarlet Nazarian
- Department of Surgery and Cancer, Imperial College London, London, United Kingdom
| | - Ben Glover
- Department of Surgery and Cancer, Imperial College London, London, United Kingdom
| | - Hutan Ashrafian
- Department of Surgery and Cancer, Imperial College London, London, United Kingdom
| | - Ara Darzi
- Department of Surgery and Cancer, Imperial College London, London, United Kingdom
| | - Julian Teare
- Department of Surgery and Cancer, Imperial College London, London, United Kingdom
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23
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Smedsrud PH, Thambawita V, Hicks SA, Gjestang H, Nedrejord OO, Næss E, Borgli H, Jha D, Berstad TJD, Eskeland SL, Lux M, Espeland H, Petlund A, Nguyen DTD, Garcia-Ceja E, Johansen D, Schmidt PT, Toth E, Hammer HL, de Lange T, Riegler MA, Halvorsen P. Kvasir-Capsule, a video capsule endoscopy dataset. Sci Data 2021; 8:142. [PMID: 34045470 PMCID: PMC8160146 DOI: 10.1038/s41597-021-00920-z] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2020] [Accepted: 04/15/2021] [Indexed: 12/12/2022] Open
Abstract
Artificial intelligence (AI) is predicted to have profound effects on the future of video capsule endoscopy (VCE) technology. The potential lies in improving anomaly detection while reducing manual labour. Existing work demonstrates the promising benefits of AI-based computer-assisted diagnosis systems for VCE. They also show great potential for improvements to achieve even better results. Also, medical data is often sparse and unavailable to the research community, and qualified medical personnel rarely have time for the tedious labelling work. We present Kvasir-Capsule, a large VCE dataset collected from examinations at a Norwegian Hospital. Kvasir-Capsule consists of 117 videos which can be used to extract a total of 4,741,504 image frames. We have labelled and medically verified 47,238 frames with a bounding box around findings from 14 different classes. In addition to these labelled images, there are 4,694,266 unlabelled frames included in the dataset. The Kvasir-Capsule dataset can play a valuable role in developing better algorithms in order to reach true potential of VCE technology.
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Affiliation(s)
- Pia H Smedsrud
- SimulaMet, Oslo, Norway.
- University of Oslo, Oslo, Norway.
- Augere Medical AS, Oslo, Norway.
| | | | - Steven A Hicks
- SimulaMet, Oslo, Norway
- Oslo Metropolitan University, Oslo, Norway
| | | | | | - Espen Næss
- SimulaMet, Oslo, Norway
- University of Oslo, Oslo, Norway
| | - Hanna Borgli
- SimulaMet, Oslo, Norway
- University of Oslo, Oslo, Norway
| | - Debesh Jha
- SimulaMet, Oslo, Norway
- UIT The Arctic University of Norway, Tromsø, Norway
| | | | | | | | | | | | | | | | - Dag Johansen
- UIT The Arctic University of Norway, Tromsø, Norway
| | - Peter T Schmidt
- Karolinska Institutet, Department of Medicine, Solna, Sweden
- Ersta Hospital, Department of Medicine, Stockholm, Sweden
| | - Ervin Toth
- Department of Gastroenterology, Skåne University Hospital, Malmö Lund University, Malmö, Sweden
| | - Hugo L Hammer
- SimulaMet, Oslo, Norway
- Oslo Metropolitan University, Oslo, Norway
| | - Thomas de Lange
- Department of Medical Research, Bærum Hospital, Gjettum, Norway
- Augere Medical AS, Oslo, Norway
- Medical Department, Sahlgrenska University Hospital-Mölndal Hospital, Göteborg, Sweden
- Department of Molecular and Clinical Medicine, Sahlgrenska Academy, University of Gothenburg, Göteborg, Sweden
| | | | - Pål Halvorsen
- SimulaMet, Oslo, Norway
- Oslo Metropolitan University, Oslo, Norway
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24
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Glissen Brown JR, Berzin TM. EndoBRAIN-EYE and the SUN database: important steps forward for computer-aided polyp detection. Gastrointest Endosc 2021; 93:968-970. [PMID: 33741095 DOI: 10.1016/j.gie.2020.09.016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/28/2020] [Accepted: 09/10/2020] [Indexed: 02/08/2023]
Affiliation(s)
- Jeremy R Glissen Brown
- Center for Advanced Endoscopy, Division of Gastroenterology, Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, Massachusetts, USA
| | - Tyler M Berzin
- Center for Advanced Endoscopy, Division of Gastroenterology, Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, Massachusetts, USA
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25
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Jha D, Ali S, Tomar NK, Johansen HD, Johansen D, Rittscher J, Riegler MA, Halvorsen P. Real-Time Polyp Detection, Localization and Segmentation in Colonoscopy Using Deep Learning. IEEE ACCESS : PRACTICAL INNOVATIONS, OPEN SOLUTIONS 2021; 9:40496-40510. [PMID: 33747684 PMCID: PMC7968127 DOI: 10.1109/access.2021.3063716] [Citation(s) in RCA: 69] [Impact Index Per Article: 23.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2021] [Accepted: 02/15/2021] [Indexed: 05/16/2023]
Abstract
Computer-aided detection, localisation, and segmentation methods can help improve colonoscopy procedures. Even though many methods have been built to tackle automatic detection and segmentation of polyps, benchmarking of state-of-the-art methods still remains an open problem. This is due to the increasing number of researched computer vision methods that can be applied to polyp datasets. Benchmarking of novel methods can provide a direction to the development of automated polyp detection and segmentation tasks. Furthermore, it ensures that the produced results in the community are reproducible and provide a fair comparison of developed methods. In this paper, we benchmark several recent state-of-the-art methods using Kvasir-SEG, an open-access dataset of colonoscopy images for polyp detection, localisation, and segmentation evaluating both method accuracy and speed. Whilst, most methods in literature have competitive performance over accuracy, we show that the proposed ColonSegNet achieved a better trade-off between an average precision of 0.8000 and mean IoU of 0.8100, and the fastest speed of 180 frames per second for the detection and localisation task. Likewise, the proposed ColonSegNet achieved a competitive dice coefficient of 0.8206 and the best average speed of 182.38 frames per second for the segmentation task. Our comprehensive comparison with various state-of-the-art methods reveals the importance of benchmarking the deep learning methods for automated real-time polyp identification and delineations that can potentially transform current clinical practices and minimise miss-detection rates.
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Affiliation(s)
- Debesh Jha
- SimulaMet0167OsloNorway
- Department of Engineering ScienceBig Data Institute, University of OxfordOxfordOX3 7XFU.K.
| | - Sharib Ali
- Department of Engineering ScienceBig Data Institute, University of OxfordOxfordOX3 7XFU.K.
- Oxford NIHR Biomedical Research CentreOxfordOX4 2PGvU.K.
| | | | - Håvard D. Johansen
- Department of Computer ScienceUiT–The Arctic University of Norway9037TromsøNorway
| | - Dag Johansen
- Department of Computer ScienceUiT–The Arctic University of Norway9037TromsøNorway
| | - Jens Rittscher
- Department of Engineering ScienceBig Data Institute, University of OxfordOxfordOX3 7XFU.K.
- Oxford NIHR Biomedical Research CentreOxfordOX4 2PGvU.K.
| | | | - Pål Halvorsen
- SimulaMet0167OsloNorway
- Department of Computer ScienceOslo Metropolitan University0167OsloNorway
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26
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Wang X, Huang J, Ji X, Zhu Z. [Application of artificial intelligence for detection and classification of colon polyps]. NAN FANG YI KE DA XUE XUE BAO = JOURNAL OF SOUTHERN MEDICAL UNIVERSITY 2021; 41:310-313. [PMID: 33624608 DOI: 10.12122/j.issn.1673-4254.2021.02.22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 12/09/2022]
Abstract
Colorectal cancer is one of the most common cancers worldwide, and colonoscopy has proven to be a preferable modality for screening and surveillance of colorectal cancer. This review discusses the clinical application of artificial intelligence (AI) and computer-aided diagnosis for automated colonoscopic detection and diagnosis of colorectal polyps for better understanding of the application of AI-based computer-aided diagnosis systems especially in terms of machine learning, deep learning and convolutional neural network for screening and surveillance of colorectal cancer.
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Affiliation(s)
- X Wang
- Information Center, First Affiliated Hospital of Kunming Medical University, Kunming 65003, China
| | - J Huang
- Department of Oncology, First Affiliated Hospital of Kunming Medical University, Kunming 65003, China
| | - X Ji
- Day Surgery Center, First Affiliated Hospital of Kunming Medical University, Kunming 65003, China
| | - Z Zhu
- Day Surgery Center, First Affiliated Hospital of Kunming Medical University, Kunming 65003, China
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27
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A-DenseUNet: Adaptive Densely Connected UNet for Polyp Segmentation in Colonoscopy Images with Atrous Convolution. SENSORS 2021; 21:s21041441. [PMID: 33669539 PMCID: PMC7922083 DOI: 10.3390/s21041441] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/12/2021] [Revised: 02/14/2021] [Accepted: 02/17/2021] [Indexed: 01/05/2023]
Abstract
Colon carcinoma is one of the leading causes of cancer-related death in both men and women. Automatic colorectal polyp segmentation and detection in colonoscopy videos help endoscopists to identify colorectal disease more easily, making it a promising method to prevent colon cancer. In this study, we developed a fully automated pixel-wise polyp segmentation model named A-DenseUNet. The proposed architecture adapts different datasets, adjusting for the unknown depth of the network by sharing multiscale encoding information to the different levels of the decoder side. We also used multiple dilated convolutions with various atrous rates to observe a large field of view without increasing the computational cost and prevent loss of spatial information, which would cause dimensionality reduction. We utilized an attention mechanism to remove noise and inappropriate information, leading to the comprehensive re-establishment of contextual features. Our experiments demonstrated that the proposed architecture achieved significant segmentation results on public datasets. A-DenseUNet achieved a 90% Dice coefficient score on the Kvasir-SEG dataset and a 91% Dice coefficient score on the CVC-612 dataset, both of which were higher than the scores of other deep learning models such as UNet++, ResUNet, U-Net, PraNet, and ResUNet++ for segmenting polyps in colonoscopy images.
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28
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Application of Artificial Intelligence in Gastrointestinal Endoscopy. J Clin Gastroenterol 2021; 55:110-120. [PMID: 32925304 DOI: 10.1097/mcg.0000000000001423] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/10/2020] [Accepted: 08/07/2020] [Indexed: 12/24/2022]
Abstract
Artificial intelligence (AI), also known as computer-aided diagnosis, is a technology that enables machines to process information and functions at or above human level and has great potential in gastrointestinal endoscopy applications. At present, the research on medical image recognition usually adopts the deep-learning algorithm based on the convolutional neural network. AI has been used in gastrointestinal endoscopy including esophagogastroduodenoscopy, capsule endoscopy, colonoscopy, etc. AI can help endoscopic physicians improve the diagnosis rate of various lesions, reduce the rate of missed diagnosis, improve the quality of endoscopy, assess the severity of the disease, and improve the efficiency of endoscopy. The diversity, susceptibility, and imaging specificity of gastrointestinal endoscopic images are all difficulties and challenges on the road to intelligence. We need more large-scale, high-quality, multicenter prospective studies to explore the clinical applicability of AI, and ethical issues need to be taken into account.
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Milluzzo SM, Cesaro P, Grazioli LM, Olivari N, Spada C. Artificial Intelligence in Lower Gastrointestinal Endoscopy: The Current Status and Future Perspective. Clin Endosc 2021; 54:329-339. [PMID: 33434961 PMCID: PMC8182250 DOI: 10.5946/ce.2020.082] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/31/2020] [Accepted: 07/30/2020] [Indexed: 12/24/2022] Open
Abstract
The present manuscript aims to review the history, recent advances, evidence, and challenges of artificial intelligence (AI) in colonoscopy. Although it is mainly focused on polyp detection and characterization, it also considers other potential applications (i.e., inflammatory bowel disease) and future perspectives. Some of the most recent algorithms show promising results that are similar to human expert performance. The integration of AI in routine clinical practice will be challenging, with significant issues to overcome (i.e., regulatory, reimbursement). Medico-legal issues will also need to be addressed. With the exception of an AI system that is already available in selected countries (GI Genius; Medtronic, Minneapolis, MN, USA), the majority of the technology is still in its infancy and has not yet been proven to reach a sufficient diagnostic performance to be adopted in the clinical practice. However, larger players will enter the arena of AI in the next few months.
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Affiliation(s)
- Sebastian Manuel Milluzzo
- Digestive Endoscopy Unit and Gastroenterology, Fondazione Poliambulanza, Brescia, Italy.,Department of Gastroenterology, Fondazione Policlinico Universitario A. Gemelli IRCCS -Università Cattolica del Sacro Cuore, Roma, Italy
| | - Paola Cesaro
- Digestive Endoscopy Unit and Gastroenterology, Fondazione Poliambulanza, Brescia, Italy
| | | | - Nicola Olivari
- Digestive Endoscopy Unit and Gastroenterology, Fondazione Poliambulanza, Brescia, Italy
| | - Cristiano Spada
- Digestive Endoscopy Unit and Gastroenterology, Fondazione Poliambulanza, Brescia, Italy.,Department of Gastroenterology, Fondazione Policlinico Universitario A. Gemelli IRCCS -Università Cattolica del Sacro Cuore, Roma, Italy
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30
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Artificial Intelligence in Medicine. Artif Intell Med 2021. [DOI: 10.1007/978-3-030-58080-3_163-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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31
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Le A, Salifu MO, McFarlane IM. Artificial Intelligence in Colorectal Polyp Detection and Characterization. INTERNATIONAL JOURNAL OF CLINICAL RESEARCH & TRIALS 2021; 6:157. [PMID: 33884326 PMCID: PMC8057724 DOI: 10.15344/2456-8007/2021/157] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
BACKGROUND Over the past 20 years, the advancement of artificial intelligence (AI) and deep learning (DL) has allowed for fast sorting and analysis of large sets of data. In the field of gastroenterology, colorectal screening procedures produces an abundance of data through video and imaging. With AI and DL, this information can be used to create systems where automatic polyp detection and characterization is possible. Convoluted Neural Networks (CNNs) have proven to be an effective way to increase polyp detection and ultimately adenoma detection rates. Different methods of polyp characterization of being hyperplastic vs. adenomatous or non-neoplastic vs. neoplastic has also been investigated showing promising results. FINDINGS The rate of missed polyps on colonoscopy can be as high as 25%. At the beginning of the 2000s, hand-crafted machine learning (ML) algorithms were created and trained retrospectively on colonoscopy images and videos, achieving high sensitivity, specificity, and accuracy of over 90% in many of the studies. Over time, the advancement of DL and CNNs has allowed algorithms to be trained on non-medical images and applied retrospectively to colonoscopy videos and images with similar results. Within the past few years, these algorithms have been applied in real-time colonoscopies and has shown mixed results, one showing no difference while others showing increased polyp detection.Various methods of polyp characterization have also been investigated. Through AI, DL, and CNNs polyps can be identified has hyperplastic/adenomatous or non-neoplastic/neoplastic with high sensitivity, specificity, and accuracy. One of the research areas in polyp characterization is how to capture the polyp image. This paper looks at different modalities of characterizing polyps such as magnifying narrow band imaging (NBI), endocytoscopy, laser-induced florescent spectroscopy, auto-florescent endoscopy, and white-light endoscopy. CONCLUSIONS Overall, much progress has been made in automatic detection and characterization of polyps in real time. Barring ethical or mass adoption setbacks, it is inevitable that AI will be involved in the field of GI, especially in colorectal polyp detection and identification.
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Affiliation(s)
| | | | - Isabel M. McFarlane
- Corresponding Author: Dr. Isabel M. McFarlane, Clinical Assistant Professor of Medicine, Director, Third Year Internal Medicine Clerkship, Department of Internal Medicine, Brooklyn, NY 11203, USA Tel: 718-270-2390, Fax: 718-270-1324;
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32
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The potential of deep learning for gastrointestinal endoscopy—a disruptive new technology. Artif Intell Med 2021. [DOI: 10.1016/b978-0-12-821259-2.00012-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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33
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Sinonquel P, Eelbode T, Bossuyt P, Maes F, Bisschops R. Artificial intelligence and its impact on quality improvement in upper and lower gastrointestinal endoscopy. Dig Endosc 2021; 33:242-253. [PMID: 33145847 DOI: 10.1111/den.13888] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/28/2020] [Revised: 10/14/2020] [Accepted: 11/01/2020] [Indexed: 12/24/2022]
Abstract
Artificial intelligence (AI) and its application in medicine has grown large interest. Within gastrointestinal (GI) endoscopy, the field of colonoscopy and polyp detection is the most investigated, however, upper GI follows the lead. Since endoscopy is performed by humans, it is inherently an imperfect procedure. Computer-aided diagnosis may improve its quality by helping prevent missing lesions and supporting optical diagnosis for those detected. An entire evolution in AI systems has been established in the last decades, resulting in optimization of the diagnostic performance with lower variability and matching or even outperformance of expert endoscopists. This shows a great potential for future quality improvement of endoscopy, given the outstanding diagnostic features of AI. With this narrative review, we highlight the potential benefit of AI to improve overall quality in daily endoscopy and describe the most recent developments for characterization and diagnosis as well as the recent conditions for regulatory approval.
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Affiliation(s)
- Pieter Sinonquel
- Department of Gastroenterology and Hepatology, University Hospitals Leuven, Leuven, Belgium.,Departments of, Department of, Translational Research in Gastrointestinal Diseases (TARGID), KU Leuven, Leuven, Belgium
| | - Tom Eelbode
- Medical Imaging Research Center (MIRC), University Hospitals Leuven, Leuven, Belgium.,Department of Electrical Engineering (ESAT/PSI), KU Leuven, Leuven, Belgium
| | - Peter Bossuyt
- Department of Gastroenterology and Hepatology, University Hospitals Leuven, Leuven, Belgium.,Department of Gastroenterology and Hepatology, Imelda Hospital, Bonheiden, Belgium
| | - Frederik Maes
- Medical Imaging Research Center (MIRC), University Hospitals Leuven, Leuven, Belgium.,Department of Electrical Engineering (ESAT/PSI), KU Leuven, Leuven, Belgium
| | - Raf Bisschops
- Department of Gastroenterology and Hepatology, University Hospitals Leuven, Leuven, Belgium.,Departments of, Department of, Translational Research in Gastrointestinal Diseases (TARGID), KU Leuven, Leuven, Belgium
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de Almeida Thomaz V, Sierra-Franco CA, Raposo AB. Training data enhancements for improving colonic polyp detection using deep convolutional neural networks. Artif Intell Med 2020; 111:101988. [PMID: 33461694 DOI: 10.1016/j.artmed.2020.101988] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2019] [Revised: 08/04/2020] [Accepted: 11/03/2020] [Indexed: 01/10/2023]
Abstract
BACKGROUND Over the last years, the most relevant results in the context of polyp detection were achieved through deep learning techniques. However, the most common obstacles in this field are the small datasets with a reduced number of samples and the lack of data variability. This paper describes a method to reduce this limitation and improve polyp detection results using publicly available colonoscopic datasets. METHODS To address this issue, we increased the number and variety of images from the original dataset. Our method consists on adding polyps to the dataset images. The developed algorithm performs a rigorous selection of the best region within the image to receive the polyp. This procedure preserves the realistic features of the images while creating more diverse samples for training purposes. Our method allows copying existing polyps to new non-polypoid target regions. We also develop a strategy to generate new and more varied polyps through generative adversarial neural networks. Hence, the developed approach enriches the training data, creating automatically new samples with their appropriate labels. RESULTS We applied the proposed data enhancement over a colonic polyp dataset. Thus, we can assess the effectiveness of our approach through a Faster R-CNN detection model. Performance results show improvements over the polyp detections while reducing the false-negative rate. The experimental results also show better recall metrics in comparison with both the original training set and other studies in the literature. CONCLUSION We demonstrate that our proposed method has the potential to increase the data variability and number of samples in a reduced polyp dataset, improving the polyp detection rate and recall values. These results open new possibilities for advancing the study and implementation of new methods to improve computer-assisted medical image analysis.
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Affiliation(s)
- Victor de Almeida Thomaz
- Pontifical Catholic University of Rio de Janeiro, Rua Marquês de São Vicente, 225, Gávea Rio de Janeiro, Brazil.
| | - Cesar A Sierra-Franco
- Tecgraf Institute of Technical-Scientific Software Development, Rua Marquês de São Vicente, 225, Gávea Rio de Janeiro, Brazil.
| | - Alberto B Raposo
- Tecgraf Institute of Technical-Scientific Software Development, Rua Marquês de São Vicente, 225, Gávea Rio de Janeiro, Brazil.
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35
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Attardo S, Chandrasekar VT, Spadaccini M, Maselli R, Patel HK, Desai M, Capogreco A, Badalamenti M, Galtieri PA, Pellegatta G, Fugazza A, Carrara S, Anderloni A, Occhipinti P, Hassan C, Sharma P, Repici A. Artificial intelligence technologies for the detection of colorectal lesions: The future is now. World J Gastroenterol 2020; 26:5606-5616. [PMID: 33088155 PMCID: PMC7545398 DOI: 10.3748/wjg.v26.i37.5606] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/02/2020] [Revised: 06/30/2020] [Accepted: 09/15/2020] [Indexed: 02/06/2023] Open
Abstract
Several studies have shown a significant adenoma miss rate up to 35% during screening colonoscopy, especially in patients with diminutive adenomas. The use of artificial intelligence (AI) in colonoscopy has been gaining popularity by helping endoscopists in polyp detection, with the aim to increase their adenoma detection rate (ADR) and polyp detection rate (PDR) in order to reduce the incidence of interval cancers. The efficacy of deep convolutional neural network (DCNN)-based AI system for polyp detection has been trained and tested in ex vivo settings such as colonoscopy still images or videos. Recent trials have evaluated the real-time efficacy of DCNN-based systems showing promising results in term of improved ADR and PDR. In this review we reported data from the preliminary ex vivo experiences and summarized the results of the initial randomized controlled trials.
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Affiliation(s)
- Simona Attardo
- Department of Endoscopy and Digestive Disease, AOU Maggiore della Carità, Novara 28100, Italy
| | | | - Marco Spadaccini
- Department of Endoscopy, Humanitas Research Hospital, Rozzano 20089, Italy
- Department of Biomedical Sciences, Humanitas University, Rozzano 20089, Italy
| | - Roberta Maselli
- Department of Endoscopy, Humanitas Research Hospital, Rozzano 20089, Italy
| | - Harsh K Patel
- Department of Internal Medicine, Ochsner Clinic Foundation, New Orleans, LA 70124, United States
| | - Madhav Desai
- Department of Gastroenterology and Hepatology, Kansas City VA Medical Center, Kansas City, MO 66045, United States
| | - Antonio Capogreco
- Department of Endoscopy, Humanitas Research Hospital, Rozzano 20089, Italy
- Department of Biomedical Sciences, Humanitas University, Rozzano 20089, Italy
| | - Matteo Badalamenti
- Department of Endoscopy, Humanitas Research Hospital, Rozzano 20089, Italy
| | | | - Gaia Pellegatta
- Department of Endoscopy, Humanitas Research Hospital, Rozzano 20089, Italy
| | - Alessandro Fugazza
- Department of Endoscopy, Humanitas Research Hospital, Rozzano 20089, Italy
| | - Silvia Carrara
- Department of Endoscopy, Humanitas Research Hospital, Rozzano 20089, Italy
| | - Andrea Anderloni
- Department of Endoscopy, Humanitas Research Hospital, Rozzano 20089, Italy
| | - Pietro Occhipinti
- Department of Endoscopy and Digestive Disease, AOU Maggiore della Carità, Novara 28100, Italy
| | - Cesare Hassan
- Endoscopy Unit, Nuovo Regina Margherita Hospital, Roma 00153, Italy
| | - Prateek Sharma
- Department of Gastroenterology and Hepatology, Kansas City VA Medical Center, Kansas City, MO 66045, United States
| | - Alessandro Repici
- Department of Endoscopy, Humanitas Research Hospital, Rozzano 20089, Italy
- Department of Biomedical Sciences, Humanitas University, Rozzano 20089, Italy
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36
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Borgli H, Thambawita V, Smedsrud PH, Hicks S, Jha D, Eskeland SL, Randel KR, Pogorelov K, Lux M, Nguyen DTD, Johansen D, Griwodz C, Stensland HK, Garcia-Ceja E, Schmidt PT, Hammer HL, Riegler MA, Halvorsen P, de Lange T. HyperKvasir, a comprehensive multi-class image and video dataset for gastrointestinal endoscopy. Sci Data 2020; 7:283. [PMID: 32859981 PMCID: PMC7455694 DOI: 10.1038/s41597-020-00622-y] [Citation(s) in RCA: 95] [Impact Index Per Article: 23.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2019] [Accepted: 07/21/2020] [Indexed: 02/08/2023] Open
Abstract
Artificial intelligence is currently a hot topic in medicine. However, medical data is often sparse and hard to obtain due to legal restrictions and lack of medical personnel for the cumbersome and tedious process to manually label training data. These constraints make it difficult to develop systems for automatic analysis, like detecting disease or other lesions. In this respect, this article presents HyperKvasir, the largest image and video dataset of the gastrointestinal tract available today. The data is collected during real gastro- and colonoscopy examinations at Bærum Hospital in Norway and partly labeled by experienced gastrointestinal endoscopists. The dataset contains 110,079 images and 374 videos, and represents anatomical landmarks as well as pathological and normal findings. The total number of images and video frames together is around 1 million. Initial experiments demonstrate the potential benefits of artificial intelligence-based computer-assisted diagnosis systems. The HyperKvasir dataset can play a valuable role in developing better algorithms and computer-assisted examination systems not only for gastro- and colonoscopy, but also for other fields in medicine.
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Affiliation(s)
- Hanna Borgli
- SimulaMet, Oslo, Norway
- University of Oslo, Oslo, Norway
| | | | - Pia H Smedsrud
- SimulaMet, Oslo, Norway
- University of Oslo, Oslo, Norway
- Augere Medical AS, Oslo, Norway
| | - Steven Hicks
- SimulaMet, Oslo, Norway
- Oslo Metropolitan University, Oslo, Norway
| | - Debesh Jha
- SimulaMet, Oslo, Norway
- UIT The Arctic University of Norway, Tromsø, Norway
| | | | | | | | | | | | - Dag Johansen
- UIT The Arctic University of Norway, Tromsø, Norway
| | | | - Håkon K Stensland
- University of Oslo, Oslo, Norway
- Simula Research Laboratory, Oslo, Norway
| | | | - Peter T Schmidt
- Department of Medicine (Solna), Karolinska Institutet, Stockholm, Sweden
- Department of Medicine, Ersta hospital, Stockholm, Sweden
| | - Hugo L Hammer
- SimulaMet, Oslo, Norway
- Oslo Metropolitan University, Oslo, Norway
| | | | - Pål Halvorsen
- SimulaMet, Oslo, Norway.
- Oslo Metropolitan University, Oslo, Norway.
| | - Thomas de Lange
- Department of Medical Research, Bærum Hospital, Bærum, Norway
- Augere Medical AS, Oslo, Norway
- Medical Department, Sahlgrenska University Hospital-Mölndal, Mölndal, Sweden
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37
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Meng J, Xue L, Chang Y, Zhang J, Chang S, Liu K, Liu S, Wang B, Yang K. Automatic detection and segmentation of adenomatous colorectal polyps during colonoscopy using Mask R-CNN. Open Life Sci 2020; 15:588-596. [PMID: 33817247 PMCID: PMC7968546 DOI: 10.1515/biol-2020-0055] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2020] [Revised: 05/27/2020] [Accepted: 06/03/2020] [Indexed: 12/27/2022] Open
Abstract
Colorectal cancer (CRC) is one of the main alimentary tract system malignancies affecting people worldwide. Adenomatous polyps are precursors of CRC, and therefore, preventing the development of these lesions may also prevent subsequent malignancy. However, the adenoma detection rate (ADR), a measure of the ability of a colonoscopist to identify and remove precancerous colorectal polyps, varies significantly among endoscopists. Here, we attempt to use a convolutional neural network (CNN) to generate a unique computer-aided diagnosis (CAD) system by exploring in detail the multiple-scale performance of deep neural networks. We applied this system to 3,375 hand-labeled images from the screening colonoscopies of 1,197 patients; of whom, 3,045 were assigned to the training dataset and 330 to the testing dataset. The images were diagnosed simply as either an adenomatous or non-adenomatous polyp. When applied to the testing dataset, our CNN-CAD system achieved a mean average precision of 89.5%. We conclude that the proposed framework could increase the ADR and decrease the incidence of interval CRCs, although further validation through large multicenter trials is required.
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Affiliation(s)
- Jie Meng
- Department of Gastroenterology and Hepatology, Tianjin Medical University General Hospital, Tianjin 300052, China.,Department of Gastroenterology, Affiliated Hospital of Hebei University, Baoding 071000, China
| | - Linyan Xue
- College of Quality and Technical Supervision, Hebei University, Baoding 071002, China
| | - Ying Chang
- Department of Gastroenterology, Affiliated Hospital of Hebei University, Baoding 071000, China
| | - Jianguang Zhang
- Department of Gastroenterology, Affiliated Hospital of Hebei University, Baoding 071000, China
| | - Shilong Chang
- College of Quality and Technical Supervision, Hebei University, Baoding 071002, China
| | - Kun Liu
- College of Quality and Technical Supervision, Hebei University, Baoding 071002, China
| | - Shuang Liu
- College of Quality and Technical Supervision, Hebei University, Baoding 071002, China
| | - Bangmao Wang
- Department of Gastroenterology and Hepatology, Tianjin Medical University General Hospital, Tianjin 300052, China
| | - Kun Yang
- College of Quality and Technical Supervision, Hebei University, Baoding 071002, China
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Thambawita V, Jha D, Hammer HL, Johansen HD, Johansen D, Halvorsen P, Riegler MA. An Extensive Study on Cross-Dataset Bias and Evaluation Metrics Interpretation for Machine Learning Applied to Gastrointestinal Tract Abnormality Classification. ACTA ACUST UNITED AC 2020. [DOI: 10.1145/3386295] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Precise and efficient automated identification of gastrointestinal (GI) tract diseases can help doctors treat more patients and improve the rate of disease detection and identification. Currently, automatic analysis of diseases in the GI tract is a hot topic in both computer science and medical-related journals. Nevertheless, the evaluation of such an automatic analysis is often incomplete or simply wrong. Algorithms are often only tested on small and biased datasets, and cross-dataset evaluations are rarely performed. A clear understanding of evaluation metrics and machine learning models with cross datasets is crucial to bring research in the field to a new quality level. Toward this goal, we present comprehensive evaluations of five distinct machine learning models using global features and deep neural networks that can classify 16 different key types of GI tract conditions, including pathological findings, anatomical landmarks, polyp removal conditions, and normal findings from images captured by common GI tract examination instruments. In our evaluation, we introduce performance hexagons using six performance metrics, such as recall, precision, specificity, accuracy, F1-score, and the Matthews correlation coefficient to demonstrate how to determine the real capabilities of models rather than evaluating them shallowly. Furthermore, we perform cross-dataset evaluations using different datasets for training and testing. With these cross-dataset evaluations, we demonstrate the challenge of actually building a generalizable model that could be used across different hospitals. Our experiments clearly show that more sophisticated performance metrics and evaluation methods need to be applied to get reliable models rather than depending on evaluations of the splits of the same dataset—that is, the performance metrics should always be interpreted together rather than relying on a single metric.
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Affiliation(s)
| | - Debesh Jha
- SimulaMet and UiT—The Arctic University of Norway, Tromsø, Norway
| | | | | | - Dag Johansen
- UiT—The Arctic University of Norway, Tromsø, Norway
| | - Pål Halvorsen
- SimulaMet and Oslo Metropolitan University, Oslo, Norway
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Real-time detection of colon polyps during colonoscopy using deep learning: systematic validation with four independent datasets. Sci Rep 2020; 10:8379. [PMID: 32433506 PMCID: PMC7239848 DOI: 10.1038/s41598-020-65387-1] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2019] [Accepted: 04/28/2020] [Indexed: 01/06/2023] Open
Abstract
We developed and validated a deep-learning algorithm for polyp detection. We used a YOLOv2 to develop the algorithm for automatic polyp detection on 8,075 images (503 polyps). We validated the algorithm using three datasets: A: 1,338 images with 1,349 polyps; B: an open, public CVC-clinic database with 612 polyp images; and C: 7 colonoscopy videos with 26 polyps. To reduce the number of false positives in the video analysis, median filtering was applied. We tested the algorithm performance using 15 unaltered colonoscopy videos (dataset D). For datasets A and B, the per-image polyp detection sensitivity was 96.7% and 90.2%, respectively. For video study (dataset C), the per-image polyp detection sensitivity was 87.7%. False positive rates were 12.5% without a median filter and 6.3% with a median filter with a window size of 13. For dataset D, the sensitivity and false positive rate were 89.3% and 8.3%, respectively. The algorithm detected all 38 polyps that the endoscopists detected and 7 additional polyps. The operation speed was 67.16 frames per second. The automatic polyp detection algorithm exhibited good performance, as evidenced by the high detection sensitivity and rapid processing. Our algorithm may help endoscopists improve polyp detection.
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Poon CCY, Jiang Y, Zhang R, Lo WWY, Cheung MSH, Yu R, Zheng Y, Wong JCT, Liu Q, Wong SH, Mak TWC, Lau JYW. AI-doscopist: a real-time deep-learning-based algorithm for localising polyps in colonoscopy videos with edge computing devices. NPJ Digit Med 2020; 3:73. [PMID: 32435701 PMCID: PMC7235017 DOI: 10.1038/s41746-020-0281-z] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2019] [Accepted: 04/28/2020] [Indexed: 12/24/2022] Open
Abstract
We have designed a deep-learning model, an "Artificial Intelligent Endoscopist (a.k.a. AI-doscopist)", to localise colonic neoplasia during colonoscopy. This study aims to evaluate the agreement between endoscopists and AI-doscopist for colorectal neoplasm localisation. AI-doscopist was pre-trained by 1.2 million non-medical images and fine-tuned by 291,090 colonoscopy and non-medical images. The colonoscopy images were obtained from six databases, where the colonoscopy images were classified into 13 categories and the polyps' locations were marked image-by-image by the smallest bounding boxes. Seven categories of non-medical images, which were believed to share some common features with colorectal polyps, were downloaded from an online search engine. Written informed consent were obtained from 144 patients who underwent colonoscopy and their full colonoscopy videos were prospectively recorded for evaluation. A total of 128 suspicious lesions were resected or biopsied for histological confirmation. When evaluated image-by-image on the 144 full colonoscopies, the specificity of AI-doscopist was 93.3%. AI-doscopist were able to localise 124 out of 128 polyps (polyp-based sensitivity = 96.9%). Furthermore, after reviewing the suspected regions highlighted by AI-doscopist in a 102-patient cohort, an endoscopist has high confidence in recognizing four missed polyps in three patients who were not diagnosed with any lesion during their original colonoscopies. In summary, AI-doscopist can localise 96.9% of the polyps resected by the endoscopists. If AI-doscopist were to be used in real-time, it can potentially assist endoscopists in detecting one more patient with polyp in every 20-33 colonoscopies.
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Affiliation(s)
- Carmen C. Y. Poon
- Division of Biomedical Engineering Research, Department of Surgery, The Chinese University of Hong Kong, Hong Kong SAR, People’s Republic of China
| | - Yuqi Jiang
- Division of Biomedical Engineering Research, Department of Surgery, The Chinese University of Hong Kong, Hong Kong SAR, People’s Republic of China
| | - Ruikai Zhang
- Division of Biomedical Engineering Research, Department of Surgery, The Chinese University of Hong Kong, Hong Kong SAR, People’s Republic of China
| | - Winnie W. Y. Lo
- Division of Biomedical Engineering Research, Department of Surgery, The Chinese University of Hong Kong, Hong Kong SAR, People’s Republic of China
| | - Maggie S. H. Cheung
- Division of Vascular and General Surgery, Department of Surgery, Prince of Wales Hospital, The Chinese University of Hong Kong, Hong Kong SAR, People’s Republic of China
| | - Ruoxi Yu
- Division of Biomedical Engineering Research, Department of Surgery, The Chinese University of Hong Kong, Hong Kong SAR, People’s Republic of China
| | - Yali Zheng
- Division of Biomedical Engineering Research, Department of Surgery, The Chinese University of Hong Kong, Hong Kong SAR, People’s Republic of China
- College of Health Science and Environmental Engineering, Shenzhen Technology University, Shenzhen, People’s Republic of China
| | - John C. T. Wong
- Division of Gastroenterology and Hepatology, Department of Medicine and Therapeutics, Institute of Digestive Disease, The Chinese University of Hong Kong, Hong Kong SAR, People’s Republic of China
| | - Qing Liu
- Department of Electrical and Electronic Engineering, Xi’an Jiaotong-Liverpool University, Suzhou, People’s Republic of China
| | - Sunny H. Wong
- Division of Gastroenterology and Hepatology, Department of Medicine and Therapeutics, Institute of Digestive Disease, The Chinese University of Hong Kong, Hong Kong SAR, People’s Republic of China
| | - Tony W. C. Mak
- Division of Colorectal Surgery, Department of Surgery, The Chinese University of Hong Kong, Hong Kong SAR, People’s Republic of China
| | - James Y. W. Lau
- Division of Vascular and General Surgery, Department of Surgery, Prince of Wales Hospital, The Chinese University of Hong Kong, Hong Kong SAR, People’s Republic of China
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Hoogenboom SA, Bagci U, Wallace MB. Artificial intelligence in gastroenterology. The current state of play and the potential. How will it affect our practice and when? ACTA ACUST UNITED AC 2020. [DOI: 10.1016/j.tgie.2019.150634] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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Zachariah R, Ninh A, Karnes W. Artificial intelligence for colon polyp detection: Why should we embrace this? ACTA ACUST UNITED AC 2020. [DOI: 10.1016/j.tgie.2019.150631] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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Hoerter N, Gross SA, Liang PS. Artificial Intelligence and Polyp Detection. CURRENT TREATMENT OPTIONS IN GASTROENTEROLOGY 2020; 18:120-136. [PMID: 31960282 PMCID: PMC7371513 DOI: 10.1007/s11938-020-00274-2] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
PURPOSE OF REVIEW This review highlights the history, recent advances, and ongoing challenges of artificial intelligence (AI) technology in colonic polyp detection. RECENT FINDINGS Hand-crafted AI algorithms have recently given way to convolutional neural networks with the ability to detect polyps in real-time. The first randomized controlled trial comparing an AI system to standard colonoscopy found a 9% increase in adenoma detection rate, but the improvement was restricted to polyps smaller than 10 mm and the results need validation. As this field rapidly evolves, important issues to consider include standardization of outcomes, dataset availability, real-world applications, and regulatory approval. SUMMARY AI has shown great potential for improving colonic polyp detection while requiring minimal training for endoscopists. The question of when AI will enter endoscopic practice depends on whether the technology can be integrated into existing hardware and an assessment of its added value for patient care.
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Affiliation(s)
| | | | - Peter S Liang
- NYU Langone Health, New York, NY, USA.
- VA New York Harbor Health Care System, New York, NY, USA.
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Anirvan P, Meher D, Singh SP. Artificial Intelligence in Gastrointestinal Endoscopy in a Resource-constrained Setting: A Reality Check. Euroasian J Hepatogastroenterol 2020; 10:92-97. [PMID: 33511071 PMCID: PMC7801886 DOI: 10.5005/jp-journals-10018-1322] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 02/06/2023] Open
Abstract
Artificial intelligence (AI) is being increasingly explored in different domains of gastroenterology, particularly in endoscopic image analysis, cancer screening, and prognostication models. It is widely touted to become an integral part of routine endoscopies, considering the bulk of data handled by endoscopists and the complex nature of critical analyses performed. However, the application of AI in endoscopy in resource-constrained settings remains fraught with problems. We conducted an extensive literature review using the PubMed database on articles covering the application of AI in endoscopy and the difficulties encountered in resource-constrained settings. We have tried to summarize in the present review the potential problems that may hinder the application of AI in such settings. Hopefully, this review will enable endoscopists and health policymakers to ponder over these issues before trying to extrapolate the advancements of AI in technically advanced settings to those having constraints at multiple levels. How to cite this article: Anirvan P, Meher D, Singh SP. Artificial Intelligence in Gastrointestinal Endoscopy in a Resource-constrained Setting: A Reality Check. Euroasian J Hepato-Gastroenterol 2020;10(2): 92–97.
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Affiliation(s)
- Prajna Anirvan
- Department of Gastroenterology, SCB Medical College, Cuttack, Odisha, India
| | - Dinesh Meher
- Department of Gastroenterology, SCB Medical College, Cuttack, Odisha, India
| | - Shivaram P Singh
- Department of Gastroenterology, SCB Medical College, Cuttack, Odisha, India
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Hsieh YH, Leung FW. An overview of deep learning algorithms and water exchange in colonoscopy in improving adenoma detection. Expert Rev Gastroenterol Hepatol 2019; 13:1153-1160. [PMID: 31755802 DOI: 10.1080/17474124.2019.1694903] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 02/09/2023]
Abstract
Introduction: Among the Gastrointestinal (GI) Endoscopy Editorial Board top 10 topics in advances in endoscopy in 2018, water exchange colonoscopy and artificial intelligence were both considered important advances. Artificial intelligence holds the potential to increase and water exchange significantly increases adenoma detection.Areas covered: The authors searched MEDLINE (1998-2019) using the following medical subject terms: water-aided, water-assisted and water exchange colonoscopy, adenoma, artificial intelligence, deep learning, computer-assisted detection, and neural networks. Additional related studies were manually searched from the reference lists of publications. Only fully published journal articles in English were reviewed. The latest date of the search was Aug10, 2019. Artificial intelligence, machine learning, and deep learning contribute to the promise of real-time computer-aided detection diagnosis. By emphasizing near-complete suction of infused water during insertion, water exchange provides salvage cleaning and decreases cleaning-related multi-tasking distractions during withdrawal, increasing adenoma detection. The review will address how artificial intelligence and water exchange can complement each other in improving adenoma detection during colonoscopy.Expert opinion: In 5 years, research on artificial intelligence will likely achieve real-time application and evaluation of factors contributing to quality colonoscopy. Better understanding and more widespread use of water exchange will be possible.
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Affiliation(s)
- Yu-Hsi Hsieh
- Dalin Tzu Chi Hospital, Buddhist Tzu Chi Medical Foundation, Chiayi, Taiwan.,School of Medicine, Tzu Chi University, Hualien City, Taiwan
| | - Felix W Leung
- Sepulveda Ambulatory Care Center, Veterans Affairs Greater Los Angeles Healthcare System, North Hills, CA, USA.,David Geffen School of Medicine, at University of California at Los Angeles, Los Angeles, CA, USA
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Yamada M, Saito Y, Imaoka H, Saiko M, Yamada S, Kondo H, Takamaru H, Sakamoto T, Sese J, Kuchiba A, Shibata T, Hamamoto R. Development of a real-time endoscopic image diagnosis support system using deep learning technology in colonoscopy. Sci Rep 2019; 9:14465. [PMID: 31594962 PMCID: PMC6783454 DOI: 10.1038/s41598-019-50567-5] [Citation(s) in RCA: 135] [Impact Index Per Article: 27.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2019] [Accepted: 09/04/2019] [Indexed: 12/11/2022] Open
Abstract
Gaps in colonoscopy skills among endoscopists, primarily due to experience, have been identified, and solutions are critically needed. Hence, the development of a real-time robust detection system for colorectal neoplasms is considered to significantly reduce the risk of missed lesions during colonoscopy. Here, we develop an artificial intelligence (AI) system that automatically detects early signs of colorectal cancer during colonoscopy; the AI system shows the sensitivity and specificity are 97.3% (95% confidence interval [CI] = 95.9%–98.4%) and 99.0% (95% CI = 98.6%–99.2%), respectively, and the area under the curve is 0.975 (95% CI = 0.964–0.986) in the validation set. Moreover, the sensitivities are 98.0% (95% CI = 96.6%–98.8%) in the polypoid subgroup and 93.7% (95% CI = 87.6%–96.9%) in the non-polypoid subgroup; To accelerate the detection, tensor metrics in the trained model was decomposed, and the system can predict cancerous regions 21.9 ms/image on average. These findings suggest that the system is sufficient to support endoscopists in the high detection against non-polypoid lesions, which are frequently missed by optical colonoscopy. This AI system can alert endoscopists in real-time to avoid missing abnormalities such as non-polypoid polyps during colonoscopy, improving the early detection of this disease.
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Affiliation(s)
- Masayoshi Yamada
- Endoscopy Division, National Cancer Center Hospital, Tokyo, Japan. .,Division of Molecular Modification and Cancer Biology, National Cancer Center Research Institute, Tokyo, Japan.
| | - Yutaka Saito
- Endoscopy Division, National Cancer Center Hospital, Tokyo, Japan
| | - Hitoshi Imaoka
- Biometrics Research Laboratories, NEC Corporation, Kanagawa, Japan
| | - Masahiro Saiko
- Biometrics Research Laboratories, NEC Corporation, Kanagawa, Japan
| | - Shigemi Yamada
- Division of Molecular Modification and Cancer Biology, National Cancer Center Research Institute, Tokyo, Japan.,Advanced Intelligence Project Center, RIKEN, Tokyo, Japan
| | - Hiroko Kondo
- Division of Molecular Modification and Cancer Biology, National Cancer Center Research Institute, Tokyo, Japan.,Advanced Intelligence Project Center, RIKEN, Tokyo, Japan
| | | | - Taku Sakamoto
- Endoscopy Division, National Cancer Center Hospital, Tokyo, Japan
| | - Jun Sese
- Artificial Intelligence Research Center, National Institute of Advanced Industrial Science and Technology, Tokyo, Japan
| | - Aya Kuchiba
- Biostatistics Division, National Cancer Center, Tokyo, Japan
| | - Taro Shibata
- Biostatistics Division, National Cancer Center, Tokyo, Japan
| | - Ryuji Hamamoto
- Division of Molecular Modification and Cancer Biology, National Cancer Center Research Institute, Tokyo, Japan.,Advanced Intelligence Project Center, RIKEN, Tokyo, Japan
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Allescher HD, Weingart V. Optimizing Screening Colonoscopy: Strategies and Alternatives. Visc Med 2019; 35:215-225. [PMID: 31602382 DOI: 10.1159/000501835] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2019] [Accepted: 06/27/2019] [Indexed: 12/11/2022] Open
Abstract
Screening colonoscopy is the most effective screening procedure for the prevention of colorectal cancer. The efficacy of colonoscopy is highly dependent on the overall quality of how this procedure is indicated, planned, prepared, and performed. The quality is directly linked to the number of polyps and/or adenomas detected or, in other words, to the number of polyps or adenomas missed during the procedure. The quality has a direct impact on the rate of interval carcinoma and on the range of how the incidence and occurrence of colorectal cancer is reduced. This review summarizes the current status on general measures and procedure improvements and standards as well as technical advances which have been suggested and established to improve the quality of polyp and adenoma detection rate. This includes selection and preparation of the patients, planning, methodological and technical performance of the procedure, and technical advances of the endoscope technology in order to improve screening results. It also covers new technologies with wide angle endoscopes (Ewave) and IT-based approaches using artificial intelligence to such as ai4GI for the polyp detection and image analysis.
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Affiliation(s)
- Hans-Dieter Allescher
- Department of Gastroenterology, Klinikum Garmisch-Partenkirchen, Garmisch-Partenkirchen, Germany
| | - Vincens Weingart
- Department of Gastroenterology, Klinikum Garmisch-Partenkirchen, Garmisch-Partenkirchen, Germany
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Vinsard DG, Mori Y, Misawa M, Kudo SE, Rastogi A, Bagci U, Rex DK, Wallace MB. Quality assurance of computer-aided detection and diagnosis in colonoscopy. Gastrointest Endosc 2019; 90:55-63. [PMID: 30926431 DOI: 10.1016/j.gie.2019.03.019] [Citation(s) in RCA: 86] [Impact Index Per Article: 17.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/08/2019] [Accepted: 03/18/2019] [Indexed: 02/05/2023]
Abstract
Recent breakthroughs in artificial intelligence (AI), specifically via its emerging sub-field "deep learning," have direct implications for computer-aided detection and diagnosis (CADe and/or CADx) for colonoscopy. AI is expected to have at least 2 major roles in colonoscopy practice-polyp detection (CADe) and polyp characterization (CADx). CADe has the potential to decrease the polyp miss rate, contributing to improving adenoma detection, whereas CADx can improve the accuracy of colorectal polyp optical diagnosis, leading to reduction of unnecessary polypectomy of non-neoplastic lesions, potential implementation of a resect-and-discard paradigm, and proper application of advanced resection techniques. A growing number of medical-engineering researchers are developing both CADe and CADx systems, some of which allow real-time recognition of polyps or in vivo identification of adenomas, with over 90% accuracy. However, the quality of the developed AI systems as well as that of the study designs vary significantly, hence raising some concerns regarding the generalization of the proposed AI systems. Initial studies were conducted in an exploratory or retrospective fashion by using stored images and likely overestimating the results. These drawbacks potentially hinder smooth implementation of this novel technology into colonoscopy practice. The aim of this article is to review both contributions and limitations in recent machine-learning-based CADe and/or CADx colonoscopy studies and propose some principles that should underlie system development and clinical testing.
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Affiliation(s)
- Daniela Guerrero Vinsard
- Showa University International Center for Endoscopy, Showa University Northern Yokohama Hospital, Yokohama, Japan; Division of Internal Medicine, University of Connecticut Health Center, Farmington, Connecticut, USA
| | - Yuichi Mori
- Digestive Disease Center, Showa University Northern Yokohama Hospital, Yokohama, Japan
| | - Masashi Misawa
- Digestive Disease Center, Showa University Northern Yokohama Hospital, Yokohama, Japan
| | - Shin-Ei Kudo
- Digestive Disease Center, Showa University Northern Yokohama Hospital, Yokohama, Japan
| | - Amit Rastogi
- Division of Gastroenterology, University of Kansas Medical Center, Kansas City, Kansas
| | - Ulas Bagci
- Center for Research in Computer Vision, University of Central Florida, Orlando, Florida
| | - Douglas K Rex
- Division of Gastroenterology and Hepatology, Indiana University School of Medicine, Indianapolis, Indiana
| | - Michael B Wallace
- Division of Gastroenterology and Hepatology, Mayo Clinic, Jacksonville, Florida, USA
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Rishi M, Kaur J, Ulanja M, Manasewitsch N, Svendsen M, Abdalla A, Vemala S, Kewanyama J, Singh K, Singh N, Gullapalli N, Osgard E. Randomized, double-blinded, placebo-controlled trial evaluating simethicone pretreatment with bowel preparation during colonoscopy. World J Gastrointest Endosc 2019; 11:413-423. [PMID: 31236194 PMCID: PMC6580307 DOI: 10.4253/wjge.v11.i6.413] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/04/2019] [Revised: 06/01/2019] [Accepted: 06/10/2019] [Indexed: 02/06/2023] Open
Abstract
BACKGROUND The presence of small air bubbles and foam are an impediment to a successful colonoscopy. They impair an endoscopist’s view and diminish the diagnostic accuracy of the study. This has been particularly noted to be of concern with the switch to lower volume polyethylene glycol (PEG) and bisacodyl combination preparation.
AIM To evaluate the effect of oral simethicone addition to bowel preparation on intraluminal bubbles reduction during colonoscopy.
METHODS Described is a prospective, randomized, multi-center, double-blinded, placebo-controlled study to evaluate the use of premixed simethicone formulation with split-regimen, low-volume PEG-bisacodyl combination bowel preparation for 168 outpatients undergoing screening, surveillance, and diagnostic colonoscopies. Primary outcome includes evaluation of bubbles during colonoscopy graded using the Intraluminal Bubbles Scale. Secondary outcomes include evaluation of the Boston Bowel Preparation Scale (BBPS), total number of polyps, polyp size differentiation, polyp laterality, adenoma detection, mass detection, cecal insertion time, withdrawal time, and patient-reported adverse events.
RESULTS Higher Intraluminal Bubbles grades III and IV (less than 75% of the mucosa cleared of bubbles/foam requiring intervention with simethicone infused wash) were detected in the placebo group [Simethicone n = 4/84 vs Placebo n = 20/84 (P = 0.007)]. BBPS total score was 7.42 [standard deviation (SD) = ± 1.51] in the simethicone group and 7.28 (SD = ± 1.44) in the placebo group (P = 0.542) from a total of 9. Significantly higher number of adenomas were detected in the simethicone group (P = 0.001).
CONCLUSION The addition of simethicone to bowel preparation is well advised for its anti-foaming properties. The results of this study suggest that addition of oral simethicone can improve bowel wall visibility.
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Affiliation(s)
- Mohit Rishi
- Department of Internal Medicine, University of Nevada, Reno School of Medicine, Renown Regional Medical Center, Reno, NV 89502, United States
| | - Jaskarin Kaur
- Department of Internal Medicine, University of Nevada, Reno School of Medicine, Renown Regional Medical Center, Reno, NV 89502, United States
| | - Mark Ulanja
- Department of Internal Medicine, University of Nevada, Reno School of Medicine, Renown Regional Medical Center, Reno, NV 89502, United States
| | - Nicholas Manasewitsch
- Department of Internal Medicine, University of Nevada, Reno School of Medicine, Renown Regional Medical Center, Reno, NV 89502, United States
| | - Molly Svendsen
- Department of Internal Medicine, University of Nevada, Reno School of Medicine, Renown Regional Medical Center, Reno, NV 89502, United States
| | - Abubaker Abdalla
- Department of Internal Medicine, University of Nevada, Reno School of Medicine, Renown Regional Medical Center, Reno, NV 89502, United States
| | - Shashank Vemala
- Department of Internal Medicine, University of Nevada, Reno School of Medicine, Renown Regional Medical Center, Reno, NV 89502, United States
| | - Julie Kewanyama
- Gastroenterology Consultants, LTD, Reno, NV 89502, United States
| | - Karmjit Singh
- Aureus Univeristy School of Medicine, Oranjestad 31C, Aruba
| | - Nirmal Singh
- American International Medical University, Gross Islet 7610, Saint Lucia
| | - Nageshwara Gullapalli
- Department of Internal Medicine, University of Nevada, Reno School of Medicine, Renown Regional Medical Center, Reno, NV 89502, United States
| | - Eric Osgard
- Gastroenterology Consultants, LTD, Reno, NV 89502, United States
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Ahmad OF, Soares AS, Mazomenos E, Brandao P, Vega R, Seward E, Stoyanov D, Chand M, Lovat LB. Artificial intelligence and computer-aided diagnosis in colonoscopy: current evidence and future directions. Lancet Gastroenterol Hepatol 2018; 4:71-80. [PMID: 30527583 DOI: 10.1016/s2468-1253(18)30282-6] [Citation(s) in RCA: 110] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/29/2018] [Revised: 08/10/2018] [Accepted: 08/20/2018] [Indexed: 12/15/2022]
Abstract
Computer-aided diagnosis offers a promising solution to reduce variation in colonoscopy performance. Pooled miss rates for polyps are as high as 22%, and associated interval colorectal cancers after colonoscopy are of concern. Optical biopsy, whereby in-vivo classification of polyps based on enhanced imaging replaces histopathology, has not been incorporated into routine practice because it is limited by interobserver variability and generally only meets accepted standards in expert settings. Real-time decision-support software has been developed to detect and characterise polyps, and also to offer feedback on the technical quality of inspection. Some of the current algorithms, particularly with recent advances in artificial intelligence techniques, match human expert performance for optical biopsy. In this Review, we summarise the evidence for clinical applications of computer-aided diagnosis and artificial intelligence in colonoscopy.
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Affiliation(s)
- Omer F Ahmad
- Wellcome/EPSRC Centre for Interventional & Surgical Sciences, University College London, London, UK; Gastrointestinal Services, University College London Hospital, London, UK.
| | - Antonio S Soares
- Division of Surgery & Interventional Science, University College London, London, UK
| | - Evangelos Mazomenos
- Wellcome/EPSRC Centre for Interventional & Surgical Sciences, University College London, London, UK
| | - Patrick Brandao
- Wellcome/EPSRC Centre for Interventional & Surgical Sciences, University College London, London, UK
| | - Roser Vega
- Gastrointestinal Services, University College London Hospital, London, UK
| | - Edward Seward
- Gastrointestinal Services, University College London Hospital, London, UK
| | - Danail Stoyanov
- Wellcome/EPSRC Centre for Interventional & Surgical Sciences, University College London, London, UK
| | - Manish Chand
- Division of Surgery & Interventional Science, University College London, London, UK; Gastrointestinal Services, University College London Hospital, London, UK
| | - Laurence B Lovat
- Wellcome/EPSRC Centre for Interventional & Surgical Sciences, University College London, London, UK; Division of Surgery & Interventional Science, University College London, London, UK; Gastrointestinal Services, University College London Hospital, London, UK
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