1
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Cai J, Song J, Peng B. Enhancing ECG Heartbeat classification with feature fusion neural networks and dynamic minority-biased batch weighting loss function. Physiol Meas 2024; 45:075002. [PMID: 38936397 DOI: 10.1088/1361-6579/ad5cc0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2024] [Accepted: 06/27/2024] [Indexed: 06/29/2024]
Abstract
Objective.This study aims to address the challenges of imbalanced heartbeat classification using electrocardiogram (ECG). In this proposed novel deep-learning method, the focus is on accurately identifying minority classes in conditions characterized by significant imbalances in ECG data.Approach.We propose a feature fusion neural network enhanced by a dynamic minority-biased batch weighting loss function. This network comprises three specialized branches: the complete ECG data branch for a comprehensive view of ECG signals, the local QRS wave branch for detailed features of the QRS complex, and theRwave information branch to analyzeRwave characteristics. This structure is designed to extract diverse aspects of ECG data. The dynamic loss function prioritizes minority classes while maintaining the recognition of majority classes, adjusting the network's learning focus without altering the original data distribution. Together, this fusion structure and adaptive loss function significantly improve the network's ability to distinguish between various heartbeat classes, enhancing the accuracy of minority class identification.Main results.The proposed method demonstrated balanced performance within the MIT-BIH dataset, especially for minority classes. Under the intra-patient paradigm, the accuracy, sensitivity, specificity, and positive predictive value for Supraventricular ectopic beat were 99.63%, 93.62%, 99.81%, and 92.98%, respectively, and for Fusion beat were 99.76%, 85.56%, 99.87%, and 84.16%, respectively. Under the inter-patient paradigm, these metrics were 96.56%, 89.16%, 96.84%, and 51.99%for Supraventricular ectopic beat, and 96.10%, 77.06%, 96.25%, and 13.92%for Fusion beat, respectively.Significance.This method effectively addresses the class imbalance in ECG datasets. By leveraging diverse ECG signal information and a novel loss function, this approach offers a promising tool for aiding in the diagnosis and treatment of cardiac conditions.
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Affiliation(s)
- Jiajun Cai
- School of Computer Science and Software Engineering, Southwest Petroleum University, Chengdu 610500, Sichuan, People's Republic of China
| | - Junmei Song
- Department of Cardiovascular Ultrasound & Noninvasive Cardiology, Sichuan Provincial People's Hospital, University of Electronic Science and Technology of China, Chengdu 610072, People's Republic of China
- Ultrasound in Cardiac Electrophysiology and Biomechanics Key Laboratory of Sichuan Province, Sichuan Provincial People's Hospital, University of Electronic Science and Technology of China, Chengdu 610072, People's Republic of China
| | - Bo Peng
- School of Computer Science and Software Engineering, Southwest Petroleum University, Chengdu 610500, Sichuan, People's Republic of China
- Tianfu Jincheng Laboratory, City of Future Medicine, Chengdu 641400, Sichuan, People's Republic of China
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Song C, Zhou Z, Yu Y, Shi M, Zhang J. An improved Bi-LSTM method based on heterogeneous features fusion and attention mechanism for ECG recognition. Comput Biol Med 2024; 169:107903. [PMID: 38171263 DOI: 10.1016/j.compbiomed.2023.107903] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2023] [Revised: 12/11/2023] [Accepted: 12/23/2023] [Indexed: 01/05/2024]
Abstract
Electrocardiogram (ECG) plays a critical role in early prevention and diagnosis of cardiovascular diseases. However, extracting powerful deep features from ECG signal for recognition is still a challenging problem today due to the variable abnormal rhythms and noise distribution. This work proposes a Bi-LSTM algorithm based on heterogeneous features fusion and attention mechanism (HFFAM + Bi-LSTM). Combining the empirical features and the features learned by the deep learning network, HFFAM + Bi-LSTM can comprehensively extract the temporal frequency information and spatial structure information of the ECG signal. Meanwhile, a novel attention mechanism based on improved DTW (AM-DTW) is designed to analyze and control the fusion process of features. The role of AM-DTW in HFFAM + Bi-LSTM is twofold, one is to measure the feature similarity between ECG signal sets with different labels using the improved DTW, and the other is to distinguish the features into isomorphic and heterogeneous features as well as adaptive weighting of the features. It is worth mentioning that overly similar isomorphic features are filtered out to further optimize the algorithm. Thus, HFFAM + Bi-LSTM has the advantage of strengthening the heterogeneous information in the feature subspace while accounting for the isomorphic features. The accuracy of HFFAM + Bi-LSTM reaches up to 98.1 % and 97.1 % on the simulated and real datasets, respectively. Compared to the all benchmark models, the classification accuracy of HFFAM + Bi-LSTM is 1.3 % higher than the best. The experiments also demonstrate that HFFAM + Bi-LSTM has better performance compared with existing methods, which provides a new scheme for automatic detection of ECG signal.
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Affiliation(s)
- Chaoyang Song
- School of Science, Jiangnan University, Wuxi, 214122, China
| | - Zilong Zhou
- School of Science, Jiangnan University, Wuxi, 214122, China
| | - Yue Yu
- School of Science, Jiangnan University, Wuxi, 214122, China
| | - Manman Shi
- School of Science, Jiangnan University, Wuxi, 214122, China
| | - Jingxiang Zhang
- School of Science, Jiangnan University, Wuxi, 214122, China.
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3
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Lin M, Hong Y, Hong S, Zhang S. Discrete Wavelet Transform based ECG classification using gcForest: A deep ensemble method. Technol Health Care 2024; 32:95-105. [PMID: 38759040 PMCID: PMC11191494 DOI: 10.3233/thc-248008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/19/2024]
Abstract
BACKGROUND Cardiovascular diseases (CVDs) are the leading global cause of mortality, necessitating advanced diagnostic tools for early detection. The electrocardiogram (ECG) is pivotal in diagnosing cardiac abnormalities due to its non-invasive nature. OBJECTIVE This study aims to propose a novel approach for ECG signal classification, addressing the challenges posed by the complexity of ECG signals associated with various diseases. METHODS Our method integrates Discrete Wavelet Transform (DWT) for feature extraction, capturing salient features of cardiovascular diseases. Subsequently, the gcForest model is employed for efficient classification. The approach is tested on the MIT-BIH Arrhythmia Database. RESULTS The proposed method demonstrates promising results on the MIT-BIH Arrhythmia Database, achieving a test accuracy of 98.55%, recall of 98.48%, precision of 98.44%, and an F1 score of 98.46%. Additionally, the model exhibits robustness and low sensitivity to hyper-parameters. CONCLUSION The combined use of DWT and the gcForest model proves effective in ECG signal classification, showcasing high accuracy and reliability. This approach holds potential for improving early detection of cardiovascular diseases, contributing to enhanced cardiac healthcare.
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Affiliation(s)
- Mingfeng Lin
- Department of General Surgery, Zhongshan Hospital of Xiamen University, Xiamen, Fujian, China
- School of Informatics, Xiamen University, Xiamen, Fujian, China
| | - Yuanzhen Hong
- Department of General Surgery, Zhongshan Hospital of Xiamen University, Xiamen, Fujian, China
- Hepatology Department’s Three Wards, Xiamen Hospital, Beijing University of Chinese Medicine, Xiamen, Fujian, China
| | - Shichai Hong
- Department of Vascular Surgery, Zhongshan Hospital (Xiamen), Fudan University, Xiamen, Fujian, China
| | - Suzhen Zhang
- Department of General Surgery, Zhongshan Hospital of Xiamen University, Xiamen, Fujian, China
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4
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Yang L, Zheng Y, Liu Z, Tang R, Ma L, Chen Y, Zhang T, Li W. SAR model for accurate detection of multi-label arrhythmias from electrocardiograms. Heliyon 2023; 9:e21627. [PMID: 38027936 PMCID: PMC10663866 DOI: 10.1016/j.heliyon.2023.e21627] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2023] [Revised: 10/06/2023] [Accepted: 10/25/2023] [Indexed: 12/01/2023] Open
Abstract
Objective Arrhythmias are prevalent symptoms of cardiovascular disease, necessitating accurate and timely detection to mitigate associated risks. Detecting arrhythmias from ECGs quickly and accurately holds great significance in preventing heart disease and reducing mortality. This research endeavors to outperform previous studies by developing a scientific neural network model capable of training and predicting ECG signals for 11 categories of arrhythmias, accounting for up to 5 co-existing labels. Methods In this study, we initially address the issue of imbalanced datasets by employing Borderline SMOTE and Cluster Centroids techniques during preprocessing. Subsequently, we propose a novel SAR model that combines attention and resnet mechanisms. The dataset is subjected to a 10-fold validation process to train and evaluate the model. Finally, several metrics such as HammingLoss, RankingLoss, F1-score, AUC and Coverage are used to evaluate the model. Results By evaluating the results of the tests, the average Hamming Loss is 1.12 %, the average Ranking Loss is 1.17 %, the average Micro F1-score is 98.46 %, the average Micro AUC is 98.76 %, and the average Coverage is 3.2762. The results show that the SAR model outperforms previous related studies on the task of classifying arrhythmia signals with multiple categories and labels. Conclusion The SAR model demonstrated excellent performance in accurately classifying multi-category and multi-label arrhythmia signals, affirming its scientific validity. Compared with previous studies, the model achieves a certain improvement in performance, which can help cardiologists to achieve scientific and accurate diagnosis of arrhythmia diseases.
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Affiliation(s)
- Liuyang Yang
- The Affiliated Hospital of Kunming University of Science and Technology. The First People's Hospital of Yunnan Province, Kunming, Yunnan, China
- Department of Management Science and Information System, Faculty of Management and Economics, Kunming University of Science and Technology, Kunming, Yunnan, China
- School of Population Medicine and Public Health, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
| | - Yaqing Zheng
- The Affiliated Hospital of Kunming University of Science and Technology. The First People's Hospital of Yunnan Province, Kunming, Yunnan, China
| | - Zhimin Liu
- The Third Affiliated Hospital of Kunming Medical University, Yunnan Cancer Hospital, Kunming, Yunnan,China
| | - Rui Tang
- Department of Management Science and Information System, Faculty of Management and Economics, Kunming University of Science and Technology, Kunming, Yunnan, China
| | - Libing Ma
- School of Population Medicine and Public Health, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
- Department of Respiratory and Critical Care Medicine, the Affiliated Hospital of Guilin Medical University, Guilin, Guangxi, China
| | - Yu Chen
- Department of Management Science and Information System, Faculty of Management and Economics, Kunming University of Science and Technology, Kunming, Yunnan, China
| | - Ting Zhang
- School of Population Medicine and Public Health, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
| | - Wei Li
- The Affiliated Hospital of Kunming University of Science and Technology. The First People's Hospital of Yunnan Province, Kunming, Yunnan, China
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Zhou C, Li X, Feng F, Zhang J, Lyu H, Wu W, Tang X, Luo B, Li D, Xiang W, Yao D. Inter-patient ECG heartbeat classification for arrhythmia classification: a new approach of multi-layer perceptron with weight capsule and sequence-to-sequence combination. Front Physiol 2023; 14:1247587. [PMID: 37841320 PMCID: PMC10569428 DOI: 10.3389/fphys.2023.1247587] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2023] [Accepted: 09/07/2023] [Indexed: 10/17/2023] Open
Abstract
Objective: The objective of this research is to construct a method to alleviate the problem of sample imbalance in classification, especially for arrhythmia classification. This approach can improve the performance of the model without using data enhancement. Methods: In this study, we have developed a new Multi-layer Perceptron (MLP) block and have used a Weight Capsule (WCapsule) network with MLP combined with sequence-to-sequence (Seq2Seq) network to classify arrhythmias. Our work is based on the MIT-BIH arrhythmia database, the original electrocardiogram (ECG) data is classified according to the criteria recommended by the American Association for Medical Instrumentation (AAMI). Also, our method's performance is further evaluated. Results: The proposed model is evaluated using the inter-patient paradigm. Our proposed method shows an accuracy (ACC) of 99.88% under sample imbalance. For Class N, sensitivity (SEN) is 99.79%, positive predictive value (PPV) is 99.90%, and specificity (SPEC) is 99.19%. For Class S, SEN is 97.66%, PPV is 96.14%, and SPEC is 99.85%. For Class V, SEN is 99.97%, PPV is 99.07%, and SPEC is 99.94%. For Class F, SEN is 97.94%, PPV is 98.70%, and SPEC is 99.99%. When using only half of the training sample, our method shows that the SEN of Class N and V is 0.97% and 5.27% higher than the traditional machine learning algorithm. Conclusion: The proposed method combines MLP, weight capsule network with Seq2seq network, effectively addresses the problem of sample imbalance in arrhythmia classification, and produces good performance. Our method also shows promising potential in less samples.
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Affiliation(s)
- Chenchen Zhou
- Key Laboratory of Electronic and Information Engineering, State Ethnic Affairs Commission, Southwest Minzu University, Chengdu, China
- Guangxi Key Laboratory of Digital Infrastructure, Guangxi Information Center, Nanning, China
| | - Xiangkui Li
- Key Laboratory of Electronic and Information Engineering, State Ethnic Affairs Commission, Southwest Minzu University, Chengdu, China
- School of Computer Science and Technology, Harbin University of Science and Technology, Harbin, China
| | - Fan Feng
- Guangxi Key Laboratory of Digital Infrastructure, Guangxi Information Center, Nanning, China
| | - Jian Zhang
- West China Biomedical Big Data Center, West China Hospital, Sichuan University, Chengdu, China
| | - He Lyu
- Key Laboratory of Electronic and Information Engineering, State Ethnic Affairs Commission, Southwest Minzu University, Chengdu, China
| | - Weixuan Wu
- Key Laboratory of Electronic and Information Engineering, State Ethnic Affairs Commission, Southwest Minzu University, Chengdu, China
| | - Xuezhi Tang
- Key Laboratory of Electronic and Information Engineering, State Ethnic Affairs Commission, Southwest Minzu University, Chengdu, China
| | - Bin Luo
- Sichuan Huhui Software Co., Ltd., Mianyang, China
| | - Dong Li
- West China Biomedical Big Data Center, West China Hospital, Sichuan University, Chengdu, China
- Med-X Center for Informatics, Sichuan University, Chengdu, China
| | - Wei Xiang
- Key Laboratory of Electronic and Information Engineering, State Ethnic Affairs Commission, Southwest Minzu University, Chengdu, China
| | - Dengju Yao
- School of Computer Science and Technology, Harbin University of Science and Technology, Harbin, China
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Lyu H, Li X, Zhang J, Zhou C, Tang X, Xu F, Yang Y, Huang Q, Xiang W, Li D. Automated inter-patient arrhythmia classification with dual attention neural network. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2023; 236:107560. [PMID: 37116424 DOI: 10.1016/j.cmpb.2023.107560] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/20/2022] [Revised: 04/13/2023] [Accepted: 04/18/2023] [Indexed: 05/21/2023]
Abstract
BACKGROUND AND OBJECTIVES Arrhythmia classification based on electrocardiograms (ECG) can enhance clinical diagnostic efficiency. However, due to the significant differences in the number of different categories of heartbeats, the performance of classes with fewer samples in arrhythmia classification have not met expectations under the inter-patient paradigm. This paper aims to mitigate the adverse effects of category imbalance and improve arrhythmia classification performance. METHODS We constructed a novel dual attention hybrid network (DA-Net) for arrhythmia classification under sample imbalance, based on modified convolutional networks with channel attention (MCC-Net) and sequence-to-sequence network with global attention (Seq2Seq). The refined local features of the input heartbeat are first extracted by MCC-Net and then sent to Seq2Seq for further feature fusion. By applying local and global attention in the feature extraction and fusion parts, respectively, the method fully fuses low-level feature details and high-level context information and enhances the ability to extract discriminative features. RESULTS Based on the MIT-BIH arrhythmia database, under the inter-patient paradigm without any data augmentation methods, the proposed method achieved 99.98% accuracy (ACC) for five categories. The various performance indicators are as follows: Class N: sensitivity (SEN) = 99.96%, specificity (SPEC) = 99.93%, positive predictive value (PPV) = 99.99%; Class S: SEN = 99.67%, SPEC = 99.98%, PPV = 99.56%; Class V: SEN = 100%, SPEC = 99.99%, PPV = 99.91%; Class F: SEN = 100%, PPV = 99.98%, SPEC = 97.17%. In further experiments simulating extreme cases, the model still achieved ACC of 99.54% and 98.91% in the three-category and five-category categories when the training sample size was much smaller than the test sample. CONCLUSIONS Without any data augmentation methods, the proposed model not only alleviates the negative impact of class imbalance and achieves excellent performance in all categories but also provides a new approach for dealing with class imbalance in arrhythmia classification. Additionally, our method demonstrates potential in conditions with fewer samples.
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Affiliation(s)
- He Lyu
- Key Laboratory of Electronic and Information Engineering, State Ethnic Affairs Commission (Southwest Minzu University). Chengdu, China
| | - Xiangkui Li
- West China Biomedical Big Data Center, West China Hospital, Sichuan University. 37 Guoxue Alley, Chengdu 610041. China
| | - Jian Zhang
- West China Biomedical Big Data Center, West China Hospital, Sichuan University. 37 Guoxue Alley, Chengdu 610041. China
| | - Chenchen Zhou
- Key Laboratory of Electronic and Information Engineering, State Ethnic Affairs Commission (Southwest Minzu University). Chengdu, China
| | - Xuezhi Tang
- Key Laboratory of Electronic and Information Engineering, State Ethnic Affairs Commission (Southwest Minzu University). Chengdu, China
| | - Fanxin Xu
- Key Laboratory of Electronic and Information Engineering, State Ethnic Affairs Commission (Southwest Minzu University). Chengdu, China
| | - Ye Yang
- Key Laboratory of Electronic and Information Engineering, State Ethnic Affairs Commission (Southwest Minzu University). Chengdu, China
| | - Qinzhen Huang
- Key Laboratory of Electronic and Information Engineering, State Ethnic Affairs Commission (Southwest Minzu University). Chengdu, China.
| | - Wei Xiang
- Key Laboratory of Electronic and Information Engineering, State Ethnic Affairs Commission (Southwest Minzu University). Chengdu, China.
| | - Dong Li
- Division of Hospital Medicine, Emory School of Medicine, 201 Dowman Dr, Atlanta, GA 30322, USA
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7
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Islam MS, Hasan KF, Sultana S, Uddin S, Lio' P, Quinn JMW, Moni MA. HARDC : A novel ECG-based heartbeat classification method to detect arrhythmia using hierarchical attention based dual structured RNN with dilated CNN. Neural Netw 2023; 162:271-287. [PMID: 36921434 DOI: 10.1016/j.neunet.2023.03.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2022] [Revised: 09/21/2022] [Accepted: 03/02/2023] [Indexed: 03/07/2023]
Abstract
Deep learning-based models have achieved significant success in detecting cardiac arrhythmia by analyzing ECG signals to categorize patient heartbeats. To improve the performance of such models, we have developed a novel hybrid hierarchical attention-based bidirectional recurrent neural network with dilated CNN (HARDC) method for arrhythmia classification. This solves problems that arise when traditional dilated convolutional neural network (CNN) models disregard the correlation between contexts and gradient dispersion. The proposed HARDC fully exploits the dilated CNN and bidirectional recurrent neural network unit (BiGRU-BiLSTM) architecture to generate fusion features. As a result of incorporating both local and global feature information and an attention mechanism, the model's performance for prediction is improved. By combining the fusion features with a dilated CNN and a hierarchical attention mechanism, the trained HARDC model showed significantly improved classification results and interpretability of feature extraction on the PhysioNet 2017 challenge dataset. Sequential Z-Score normalization, filtering, denoising, and segmentation are used to prepare the raw data for analysis. CGAN (Conditional Generative Adversarial Network) is then used to generate synthetic signals from the processed data. The experimental results demonstrate that the proposed HARDC model significantly outperforms other existing models, achieving an accuracy of 99.60%, F1 score of 98.21%, a precision of 97.66%, and recall of 99.60% using MIT-BIH generated ECG. In addition, this approach significantly reduces run time when using dilated CNN compared to normal convolution. Overall, this hybrid model demonstrates an innovative and cost-effective strategy for ECG signal compression and high-performance ECG recognition. Our results indicate that an automated and highly computed method to classify multiple types of arrhythmia signals holds considerable promise.
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Affiliation(s)
- Md Shofiqul Islam
- Faculty of Computing, Universiti Malaysia Pahang, Gambang 26300, Kuantan, Pahang, Malaysia; IBM Centre of Excellence, Centre for Software Development & Integrated Computing, Universiti Malaysia Pahang (UMP), Lebuhraya Tun Razak, Gambang 26300, Kuantan, Pahang, Malaysia
| | - Khondokar Fida Hasan
- School of Computer Science, Queensland University of Technology (QUT), 2 George Street, Brisbane 4000, Australia
| | - Sunjida Sultana
- Department of Computer Science and Engineering, Islamic University, Kushtia 7600, Bangladesh
| | - Shahadat Uddin
- School of Project Management, Faculty of Engineering, The University of Sydney, Sydney, Australia
| | - Pietro Lio'
- Department of Computer Science and Technology, University of Cambridge, Cambridge, UK
| | - Julian M W Quinn
- Bone Research Group, The Garvan Institute of Medical Research, Darlinghurst, NSW, Australia
| | - Mohammad Ali Moni
- Artificial Intelligence & Data Science, School of Health and Rehabilitation Sciences, Faculty of Health and Behavioural Sciences, The University of Queensland St Lucia, QLD 4072, Australia.
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8
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A robust myocardial infarction localization system based on multi-branch residual shrinkage network and active learning with clustering. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2022.104238] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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9
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QRS detection and classification in Holter ECG data in one inference step. Sci Rep 2022; 12:12641. [PMID: 35879331 PMCID: PMC9314324 DOI: 10.1038/s41598-022-16517-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2022] [Accepted: 07/11/2022] [Indexed: 11/11/2022] Open
Abstract
While various QRS detection and classification methods were developed in the past, the Holter ECG data acquired during daily activities by wearable devices represent new challenges such as increased noise and artefacts due to patient movements. Here, we present a deep-learning model to detect and classify QRS complexes in single-lead Holter ECG. We introduce a novel approach, delivering QRS detection and classification in one inference step. We used a private dataset (12,111 Holter ECG recordings, length of 30 s) for training, validation, and testing the method. Twelve public databases were used to further test method performance. We built a software tool to rapidly annotate QRS complexes in a private dataset, and we annotated 619,681 QRS complexes. The standardised and down-sampled ECG signal forms a 30-s long input for the deep-learning model. The model consists of five ResNet blocks and a gated recurrent unit layer. The model's output is a 30-s long 4-channel probability vector (no-QRS, normal QRS, premature ventricular contraction, premature atrial contraction). Output probabilities are post-processed to receive predicted QRS annotation marks. For the QRS detection task, the proposed method achieved the F1 score of 0.99 on the private test set. An overall mean F1 cross-database score through twelve external public databases was 0.96 ± 0.06. In terms of QRS classification, the presented method showed micro and macro F1 scores of 0.96 and 0.74 on the private test set, respectively. Cross-database results using four external public datasets showed micro and macro F1 scores of 0.95 ± 0.03 and 0.73 ± 0.06, respectively. Presented results showed that QRS detection and classification could be reliably computed in one inference step. The cross-database tests showed higher overall QRS detection performance than any of compared methods.
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10
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Hait SR, Dutta B, Guha D, Chakraborty D. Improved Bonferroni mean operator to apprehend graph based data interconnections with application to the Hacker Attack system. Inf Sci (N Y) 2022. [DOI: 10.1016/j.ins.2022.10.085] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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11
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Toma TI, Choi S. A Parallel Cross Convolutional Recurrent Neural Network for Automatic Imbalanced ECG Arrhythmia Detection with Continuous Wavelet Transform. SENSORS (BASEL, SWITZERLAND) 2022; 22:7396. [PMID: 36236496 PMCID: PMC9573388 DOI: 10.3390/s22197396] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Revised: 09/19/2022] [Accepted: 09/21/2022] [Indexed: 06/16/2023]
Abstract
Automatic detection of arrhythmia using electrocardiogram (ECG) and deep learning (DL) is very important to reduce the global death rate from cardiovascular diseases (CVD). Previous studies on automatic arrhythmia detection relied largely on various ECG features and have achieved considerable classification accuracy using DL-based models. However, most previous research has ignored multi-class imbalanced problems in ECG arrhythmia detection. Therefore, it remains a challenge to improve the classification performance of the DL-based models. This paper proposes a novel parallel cross convolutional recurrent neural network in order to improve the arrhythmia detection performance of imbalanced ECG signals. The proposed model incorporates a recurrent neural network and a two-dimensional (2D) convolutional neural network (CNN) and can effectively learn temporal characteristics and rich spatial information of raw ECG signals. Continuous wavelet transform (CWT) is used to transform the ECG signals into a 2D scalogram composed of time-frequency components, and subsequently, the 2D-CNN can learn spatial information from the 2D scalogram. The proposed model is not only efficient in learning features with imbalanced samples but can also significantly improve model convergence with higher accuracy. The overall performance of our proposed model is evaluated based on the MIT-BIH arrhythmia dataset. Detailed analysis of evaluation metrics reveals that the proposed model is very effective in arrhythmia detection and significantly better than the existing hierarchical network models.
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12
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Zhong M, Li F, Chen W. Automatic arrhythmia detection with multi-lead ECG signals based on heterogeneous graph attention networks. MATHEMATICAL BIOSCIENCES AND ENGINEERING : MBE 2022; 19:12448-12471. [PMID: 36654006 DOI: 10.3934/mbe.2022581] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
Automatic arrhythmia detection is very important for cardiovascular health. It is generally performed by measuring the electrocardiogram (ECG) signals of standard multiple leads. However, the correlations of multiple leads are often ignored. In addition, an extensive and complex feature extraction process is usually needed in most existing studies. Therefore, these challenges will not only lead to the loss of overall lead information, but also cause the detection performance to depend on the quality of features. To solve these challenges, a novel multi-lead arrhythmia detection model based on a heterogeneous graph attention network is proposed in this paper. We have modeled the multi-lead data as a heterogeneous graph to integrate diverse information and construct intra-lead and inter-lead correlations in multi-lead data, providing a reasonable and effective the data model. A heterogeneous graph network with a dual-level attention strategy has been utilized to capture the interactions among diverse information and information types. At the same time, our model does not require any feature extraction process for the ECG signals, which avoids out complex feature engineering. Extensive experimental results show that multi-lead information and complex correlations can be well captured, thus confirming that the proposed model results in significant improvements in multi-lead arrhythmia detection.
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Affiliation(s)
- MingHao Zhong
- School of Computer Science and Technology, Guangdong University of Technology, Guangzhou 510006, China
| | - Fenghuan Li
- School of Computer Science and Technology, Guangdong University of Technology, Guangzhou 510006, China
| | - Weihong Chen
- School of Computer Science and Technology, Guangdong University of Technology, Guangzhou 510006, China
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13
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Faust O, Hong W, Loh HW, Xu S, Tan RS, Chakraborty S, Barua PD, Molinari F, Acharya UR. Heart rate variability for medical decision support systems: A review. Comput Biol Med 2022; 145:105407. [DOI: 10.1016/j.compbiomed.2022.105407] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2021] [Revised: 03/09/2022] [Accepted: 03/12/2022] [Indexed: 12/22/2022]
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14
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Du C, Liu PX, Zheng M. Classification of Imbalanced Electrocardiosignal Data using Convolutional Neural Network. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2022; 214:106483. [PMID: 34871837 DOI: 10.1016/j.cmpb.2021.106483] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2021] [Accepted: 10/14/2021] [Indexed: 06/13/2023]
Abstract
BACKGROUND AND OBJECTIVE In the application of wearable heart-monitors, it is of great significance to analyze electrocardiogram (ECG) signals for anomaly detection. ECG arrhythmia classification remains an open problem in that it cannot easily recognize data from minority classes due to the imbalanced dataset and particular characteristic of the time series signal. In this study, a novel method is presented as a possible solution to imbalanced classification problems. METHODS An improved data augmentation method based on variational auto-encoder (VAE) and auxiliary classifier generative adversarial network (ACGAN) is implemented to address the difficulties resulting from the imbalanced dataset. Based on the augmented dataset, convolutional neural network (CNN) classifiers are employed to automatically recognize arrhythmias using two-dimensional ECG images. RESULTS In experimental studies conducted with the MIT-BIH arrhythmia database, the proposed method achieves 98.45% accuracy and 97.03% sensitivity. The sensitivities of two minority classes achieve 95.83% and 97.37%, respectively. CONCLUSION In imbalanced classification, the sensitivity of minority class is a key evaluation indicator. One of the significant contributions of this study is that the proposed method can obtain higher sensitivity of minority class. The experimental results demonstrate that the proposed method for ECG arrhythmia calssification under imbalanced data has better performance compared with traditional cropping augmentation methods and traditional classifiers.
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Affiliation(s)
- Chaofan Du
- School of Mechanical, Electronic and Control Engineering, Beijing Jiaotong University, Beijing, 100044, P. R. China.
| | - Peter Xiaoping Liu
- Department of Systems and Computer Engineering, Carleton University, Ottawa, ON K1S 5B6, Canada.
| | - Minhua Zheng
- School of Mechanical, Electronic and Control Engineering, Beijing Jiaotong University, Beijing, 100044, P. R. China; Key Laboratory of Vehicle Advanced Manufacturing, Measuring and Control Technology (Beijing Jiaotong University), Ministry of Education, P. R. China.
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15
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Liu M, Zhang Y, Wang J, Qin N, Yang H, Sun K, Hao J, Shu L, Liu J, Chen Q, Zhang P, Tao TH. A star-nose-like tactile-olfactory bionic sensing array for robust object recognition in non-visual environments. Nat Commun 2022; 13:79. [PMID: 35013205 PMCID: PMC8748716 DOI: 10.1038/s41467-021-27672-z] [Citation(s) in RCA: 26] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2021] [Accepted: 11/24/2021] [Indexed: 12/18/2022] Open
Abstract
Object recognition is among the basic survival skills of human beings and other animals. To date, artificial intelligence (AI) assisted high-performance object recognition is primarily visual-based, empowered by the rapid development of sensing and computational capabilities. Here, we report a tactile-olfactory sensing array, which was inspired by the natural sense-fusion system of star-nose mole, and can permit real-time acquisition of the local topography, stiffness, and odor of a variety of objects without visual input. The tactile-olfactory information is processed by a bioinspired olfactory-tactile associated machine-learning algorithm, essentially mimicking the biological fusion procedures in the neural system of the star-nose mole. Aiming to achieve human identification during rescue missions in challenging environments such as dark or buried scenarios, our tactile-olfactory intelligent sensing system could classify 11 typical objects with an accuracy of 96.9% in a simulated rescue scenario at a fire department test site. The tactile-olfactory bionic sensing system required no visual input and showed superior tolerance to environmental interference, highlighting its great potential for robust object recognition in difficult environments where other methods fall short.
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Affiliation(s)
- Mengwei Liu
- State Key Laboratory of Transducer Technology, Shanghai Institute of Microsystem and Information Technology, Chinese Academy of Sciences, Shanghai, 200050, China
- School of Graduate Study, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Yujia Zhang
- State Key Laboratory of Transducer Technology, Shanghai Institute of Microsystem and Information Technology, Chinese Academy of Sciences, Shanghai, 200050, China
- School of Graduate Study, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Jiachuang Wang
- State Key Laboratory of Transducer Technology, Shanghai Institute of Microsystem and Information Technology, Chinese Academy of Sciences, Shanghai, 200050, China
- School of Graduate Study, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Nan Qin
- State Key Laboratory of Transducer Technology, Shanghai Institute of Microsystem and Information Technology, Chinese Academy of Sciences, Shanghai, 200050, China
| | - Heng Yang
- State Key Laboratory of Transducer Technology, Shanghai Institute of Microsystem and Information Technology, Chinese Academy of Sciences, Shanghai, 200050, China
- School of Graduate Study, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Ke Sun
- State Key Laboratory of Transducer Technology, Shanghai Institute of Microsystem and Information Technology, Chinese Academy of Sciences, Shanghai, 200050, China
- School of Graduate Study, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Jie Hao
- Institute of Automation, Chinese Academy of Sciences, Beijing, 100049, China
| | - Lin Shu
- Institute of Automation, Chinese Academy of Sciences, Beijing, 100049, China
| | - Jiarui Liu
- Institute of Automation, Chinese Academy of Sciences, Beijing, 100049, China
| | - Qiang Chen
- Shanghai Fire Research Institute of MEM, Shanghai, 200003, China
| | - Pingping Zhang
- Suzhou Huiwen Nanotechnology Co., Ltd, Suzhou, 215004, China
| | - Tiger H Tao
- State Key Laboratory of Transducer Technology, Shanghai Institute of Microsystem and Information Technology, Chinese Academy of Sciences, Shanghai, 200050, China.
- School of Graduate Study, University of Chinese Academy of Sciences, Beijing, 100049, China.
- Center of Materials Science and Optoelectronics Engineering, University of Chinese Academy of Sciences, Beijing, 100049, China.
- 2020 X-Lab, Shanghai Institute of Microsystem and Information Technology, Chinese Academy of Sciences, Shanghai, 200050, China.
- School of Physical Science and Technology, ShanghaiTech University, Shanghai, 200031, China.
- Institute of Brain-Intelligence Technology, Zhangjiang Laboratory, Shanghai, 200031, China.
- Shanghai Research Center for Brain Science and Brain-Inspired Intelligence, Shanghai, 200031, China.
- Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai, 200031, China.
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16
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Arrhythmia classification of LSTM autoencoder based on time series anomaly detection. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2021.103228] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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17
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Nazari E, Biviji R, Roshandel D, Pour R, Shahriari MH, Mehrabian A, Tabesh H. Decision fusion in healthcare and medicine: a narrative review. Mhealth 2022; 8:8. [PMID: 35178439 PMCID: PMC8800206 DOI: 10.21037/mhealth-21-15] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/01/2021] [Accepted: 08/02/2021] [Indexed: 11/06/2022] Open
Abstract
OBJECTIVE To provide an overview of the decision fusion (DF) technique and describe the applications of the technique in healthcare and medicine at prevention, diagnosis, treatment and administrative levels. BACKGROUND The rapid development of technology over the past 20 years has led to an explosion in data growth in various industries, like healthcare. Big data analysis within the healthcare systems is essential for arriving to a value-based decision over a period of time. Diversity and uncertainty in big data analytics have made it impossible to analyze data by using conventional data mining techniques and thus alternative solutions are required. DF is a form of data fusion techniques that could increase the accuracy of diagnosis and facilitate interpretation, summarization and sharing of information. METHODS We conducted a review of articles published between January 1980 and December 2020 from various databases such as Google Scholar, IEEE, PubMed, Science Direct, Scopus and web of science using the keywords decision fusion (DF), information fusion, healthcare, medicine and big data. A total of 141 articles were included in this narrative review. CONCLUSIONS Given the importance of big data analysis in reducing costs and improving the quality of healthcare; along with the potential role of DF in big data analysis, it is recommended to know the full potential of this technique including the advantages, challenges and applications of the technique before its use. Future studies should focus on describing the methodology and types of data used for its applications within the healthcare sector.
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Affiliation(s)
- Elham Nazari
- Department of Medical Informatics, Mashhad University of Medical Sciences, Mashhad, Iran
| | - Rizwana Biviji
- Science of Healthcare Delivery, College of Health Solutions, Arizona State University, Phoenix, AZ, USA
| | - Danial Roshandel
- Centre for Ophthalmology and Visual Science (affiliated with the Lions Eye Institute), The University of Western Australia, Perth, Western Australia, Australia
| | - Reza Pour
- Department of Computer Engineering, Azad University, Mashhad, Iran
| | - Mohammad Hasan Shahriari
- Department of Health Information Technology and Management, School of Allied Medical Sciences, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Amin Mehrabian
- Warwick Medical School, University of Warwick, Coventry, UK
| | - Hamed Tabesh
- Department of Medical Informatics, Mashhad University of Medical Sciences, Mashhad, Iran
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18
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Classification cardiac beats using arterial blood pressure signal based on discrete wavelet transform and deep convolutional neural network. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2021.103131] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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19
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Fernandes F, Stefenon SF, Seman LO, Nied A, Ferreira FCS, Subtil MCM, Klaar ACR, Leithardt VRQ. Long short-term memory stacking model to predict the number of cases and deaths caused by COVID-19. JOURNAL OF INTELLIGENT & FUZZY SYSTEMS 2021. [DOI: 10.3233/jifs-212788] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
The long short-term memory (LSTM) is a high-efficiency model for forecasting time series, for being able to deal with a large volume of data from a time series with nonlinearities. As a case study, the stacked LSTM will be used to forecast the growth of the pandemic of COVID-19, based on the increase in the number of contaminated and deaths in the State of Santa Catarina, Brazil. COVID-19 has been spreading very quickly, causing great concern in relation to the ability to care for critically ill patients. Control measures are being imposed by governments with the aim of reducing the contamination and the spreading of viruses. The forecast of the number of contaminated and deaths caused by COVID-19 can help decision making regarding the adopted restrictions, making them more or less rigid depending on the pandemic’s control capacity. The use of LSTM stacking shows an R2 of 0.9625 for confirmed cases and 0.9656 for confirmed deaths caused by COVID-19, being superior to the combinations among other evaluated models.
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Affiliation(s)
- Filipe Fernandes
- Electrical Engineering Graduate Program, Santa Catarina State University. R. Paulo Malschitzki, North Industrial Zone, Joinville, Brazil
| | - Stéfano Frizzo Stefenon
- Electrical Engineering Graduate Program, Santa Catarina State University. R. Paulo Malschitzki, North Industrial Zone, Joinville, Brazil
- Fondazione Bruno Kessler, Istituto per la Ricerca Scientifica e Tecnologica. ViaSommarive, Povo, Trento, Italy
- Computer Scienceand Artificial Intelligence, University of Udine. Via delleScienze 206, 33100 Udine, Italy
| | - Laio Oriel Seman
- Graduate Programin Applied Computer Science, University of Vale do Itajaí. Uruguai 458, Centro, Itajaí, 88302-202, Brazil
| | - Ademir Nied
- Electrical Engineering Graduate Program, Santa Catarina State University. R. Paulo Malschitzki, North Industrial Zone, Joinville, Brazil
| | | | | | | | - Valderi Reis Quietinho Leithardt
- VALORIZA, Research Center for Endogenous Resources Valorization, Instituto Politécnicode Portalegre. 7300-555 Portalegre, Portugal
- COPELABS, Universidade Lusófona deHumanidades e Tecnologias. Campo Grande 376, 1749-024 Lisboa, Portugal
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Li X, Zhang J, Chen W, Chen Y, Zhang C, Xiang W, Li D. Inter-patient automated arrhythmia classification: A new approach of weight capsule and sequence to sequence combination. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2021; 214:106533. [PMID: 34879327 DOI: 10.1016/j.cmpb.2021.106533] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/14/2021] [Revised: 10/21/2021] [Accepted: 11/12/2021] [Indexed: 02/08/2023]
Abstract
OBJECTIVE We propose a new capsule network to compensate for the information loss in the deep convolutional networks in previous studies, and to improve the performance of arrhythmia classification. METHODS We proposed the innovative weight capsule model which uses a weight capsule network combined with sequence-to-sequence (Seq2Seq) modeling to classify arrhythmia, and explored the performance of this approach. RESULTS Based on the MIT-BIH arrhythmia database, we obtained better results compared with previous studies without data enhancement and balance for the samples. The specific performance was as follows: accuracy (ACC) = 99.85%; Class N: sensitivity (SEN) = 99.66%, positive predictive value (PPV) = 99.97%, specificity (SPEC) = 99.72%; Class S: SEN = 99.56%, PPV = 92.23%, SPEC = 99.68%; Class V: SEN = 99.97%, PPV = 99.38%, PPV = 99.96%; Class F: SEN = 93.81%, PPV = 100.00%, SPEC = 100.00%. When only half of the training sample was used, the method showed that the average accuracy and sensitivity of Class V and F were 1.57%, 2.01%, and 1.55% higher, respectively, than the traditional machine learning algorithm using the whole training sample. CONCLUSION Applying a weight capsule network combined with a Seq2Seq model in the field of arrhythmia not only alleviates the problem of inter-category sample imbalance effectively, but also improves the arrhythmia classification. SIGNIFICANCE Our study suggests a new idea for solving the problem of small sample sizes and inter-category sample imbalance in the medical field.
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Affiliation(s)
- Xiangkui Li
- West China Biomedical Big Data Center, West China Hospital, Sichuan University, 37 Guoxue Alley, Chengdu 610041, China
| | - Jian Zhang
- West China Biomedical Big Data Center, West China Hospital, Sichuan University, 37 Guoxue Alley, Chengdu 610041, China
| | - Wei Chen
- West China Biomedical Big Data Center, West China Hospital, Sichuan University, 37 Guoxue Alley, Chengdu 610041, China; Department of Neurosurgery, West China Hospital, Sichuan University, 37 Guoxue Alley, Chengdu 610041, China
| | - Yilong Chen
- West China Biomedical Big Data Center, West China Hospital, Sichuan University, 37 Guoxue Alley, Chengdu 610041, China
| | - Chao Zhang
- West China Biomedical Big Data Center, West China Hospital, Sichuan University, 37 Guoxue Alley, Chengdu 610041, China
| | - Wei Xiang
- Key Laboratory of Electronic and Information Engineering of the State Ethnic Affair Commission, Southwest Minzu University, Chengdu 610041, China.
| | - Dong Li
- Division of Hospital Medicine, Emory School of Medicine, 201 Dowman Dr, Atlanta, GA 30322, United States.
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21
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Murat F, Yildirim O, Talo M, Demir Y, Tan RS, Ciaccio EJ, Acharya UR. Exploring deep features and ECG attributes to detect cardiac rhythm classes. Knowl Based Syst 2021. [DOI: 10.1016/j.knosys.2021.107473] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
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22
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Gan Y, Shi JC, He WM, Sun FJ. Parallel classification model of arrhythmia based on DenseNet-BiLSTM. Biocybern Biomed Eng 2021. [DOI: 10.1016/j.bbe.2021.09.001] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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23
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He Z, Yuan Z, An P, Zhao J, Du B. MFB-LANN: A lightweight and updatable myocardial infarction diagnosis system based on convolutional neural networks and active learning. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2021; 210:106379. [PMID: 34517182 DOI: 10.1016/j.cmpb.2021.106379] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2021] [Accepted: 08/24/2021] [Indexed: 05/13/2023]
Abstract
BACKGROUND AND OBJECTIVES 12 leads electrocardiogram (ECG) are widely used to diagnose myocardial infarction (MI). Generally, the symptoms of MI can be reflected by waveforms in the heartbeat, and the contribution of different ECG leads to different types of MI is different. Therefore, it is significant to use the heartbeat waveform features and the lead relationship features for multi-category MI diagnosis. Moreover, the challenge of individual differences and lightweight algorithms also need to be further resolved and explored in the ECG automatic diagnosis system. METHODS This paper presents a lightweight MI diagnosis system named multi-feature-branch lead attention neural network (MFB-LANN) via 12 leads ECG signals. It is designed based on the characteristics of the ECG lead. Specifically, 12 independent feature branches correspond to different leads, and each branch contains different convolutional layers to extract features in the heartbeat, then a novel attention module is developed named lead attention mechanism (LAM) to assign different weights to each feature branch. Finally all the weighted feature branches are fused for classification. Furthermore, to overcome individual differences, patient-specific scheme and active learning (AL) are used to train and update the model iteratively. RESULTS Experimental results based on Physikalisch-Technische Bundesanstalt (PTB) database shows that the MFB-LANN achieved satisfactory results with accuracy of 99.63% based on 5-fold cross validation under the intra-patient scheme. The patient-specific experiment yielded an average accuracy of 96.99% compared to the state-of-the-art. By contrast, the model achieved acceptable results on the hybrid database (PTB and PTB-XL), especially achieving 94.19% accuracy after the update. Moreover, the system can complete the update process and real-time diagnosis on the ARM Cortex-A72 platform. CONCLUSIONS Experiments show that the proposed method for MI diagnosis has more obvious advantages compared to other recent methods, and it has great potential to be applied to the mobile medical field.
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Affiliation(s)
- Ziyang He
- School of Computer Science, Wuhan University, Wuhan 430072, China
| | - Zhiyong Yuan
- School of Computer Science, Wuhan University, Wuhan 430072, China.
| | - Panfeng An
- School of Computer Science, Wuhan University, Wuhan 430072, China
| | - Jianhui Zhao
- School of Computer Science, Wuhan University, Wuhan 430072, China
| | - Bo Du
- School of Computer Science, Wuhan University, Wuhan 430072, China
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24
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Luo X, Yang L, Cai H, Tang R, Chen Y, Li W. Multi-classification of arrhythmias using a HCRNet on imbalanced ECG datasets. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2021; 208:106258. [PMID: 34218172 DOI: 10.1016/j.cmpb.2021.106258] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2021] [Accepted: 06/17/2021] [Indexed: 06/13/2023]
Abstract
BACKGROUND AND OBJECTIVE Cardiac arrhythmia, which is an abnormal heart rhythm, is a common clinical problem in cardiology. Arrhythmias can be divided into many Categories, and accurate detection of arrhythmias can effectively prevent heart disease and reduce mortality. However, existing screening methods require long time monitoring and are low cost and low yield. Our goal is to develop a mixed depth model for processing time series to predict multi-classification electrocardiograph (ECG). METHODS In this study, we developed a new, more robust network model named Hybrid Convolutional Recurrent Neural Network (HCRNet) for the time-series signal of ECG. This model utilized a nine-class ECG dataset containing tens of thousands of data to automatically detect cardiac arrhythmias. At the same time, a large imbalance arose because some of the cases in our selected MIT-BIH atrial fibrillation database had less than 100 records, but some had more than 10,000 records. Therefore, during data preprocessing, we adopted a scientific and efficient method to solve the ECG data imbalance problem. In the experimental studies, 10-fold cross validation technique is employed to evaluate performance of the model. RESULTS In order to fully validate our proposed model, we conducted a comprehensive experiment to investigate the performance of the proposed method. Our proposed HCRNet achieved the average accuracy of 99.01% performance and the average sensitivity of 99.58% performance on this dataset. Results suggest that the proposed model outperformed some state-of-the-art studies in ECG classification with a high overall performance value. CONCLUSION The HCRNet model can effectively classify arrhythmia signals in nine categories and obtain high efficiency, accuracy and F1 values. These improvements in efficiency and accuracy explain the rationality and science of setting up the modules in the HCRNet. By using this model, it can help cardiologists to correctly identify heartbeat types and perform arrhythmia diagnosis quickly.
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Affiliation(s)
- Xinyu Luo
- Department of Management Science and Information System, Faculty of Management and Economics, Kunming University of Science and Technology, China.
| | - Liuyang Yang
- Department of Management Science and Information System, Faculty of Management and Economics, Kunming University of Science and Technology, China.
| | - Hongyu Cai
- Department of Management Science and Information System, Faculty of Management and Economics, Kunming University of Science and Technology, China.
| | - Rui Tang
- Department of Management Science and Information System, Faculty of Management and Economics, Kunming University of Science and Technology, China.
| | - Yu Chen
- Department of Management Science and Information System, Faculty of Management and Economics, Kunming University of Science and Technology, China.
| | - Wei Li
- The First People's Hospital of Yunnan Province, China.
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25
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甘 屹, 施 俊, 高 丽, 何 伟. [An arrhythmia classification method based on deep learning parallel network model]. NAN FANG YI KE DA XUE XUE BAO = JOURNAL OF SOUTHERN MEDICAL UNIVERSITY 2021; 41:1296-1303. [PMID: 34658342 PMCID: PMC8526312 DOI: 10.12122/j.issn.1673-4254.2021.09.02] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Subscribe] [Scholar Register] [Received: 06/04/2021] [Indexed: 11/24/2022]
Abstract
OBJECTIVE We propose a parallel neural network classification method to improve the performance of classification of 4 types of arrhythmias: normal beat, supraventricular ectopic beat, ventricular ectopic beat and fused beat. METHODS Preprocessing was performed including denoising of ECG signal, segmentation of small-scale heartbeat and large-scale heartbeat and data enhancement. Based on deep learning theory, densely connected convolutional network was applied to improve the limitation of waveform feature extraction, and bidirectional long short-term memory network and efficient channel attention network were combined to enhance the function of time series features and important features of the waveform. The parallel network structure was adopted, and the waveform features of small- scale heartbeat and large-scale heartbeat were input to improve the accuracy of arrhythmia classification at the same time. Softmax was used to carry out the 4 classification tasks of arrhythmia by the parallel network model. RESULTS The proposed method was verified using MIT-BIH Arrhythmia Database and 3 groups of experiments. The experiments for comparing the classification performance of multiple parallel network models and that of each classification model under different heartbeat input methods showed that the proposed classification model had an overall accuracy, average sensitivity and average specificity of 99.36%, 96.08% and 99.41%, respectively. Convergence performance analysis of the parallel network classification model showed that the training time of the classification model was 41 s. CONCLUSION The parallel multi-network classification method can improve the average sensitivity, specificity and training time while maintaining a high overall accuracy, and may thus provide a new technical solution for clinical diagnosis of arrhythmia.
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Affiliation(s)
- 屹 甘
- 上海理工大学机械工程学院,上海 200093School of Mechanical Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China
- 日本中央大学理工学部精密工学 科,日本 东京 112-0003Faculty of Science and Engineering, Chuo University, Tokyo 112-0003, Japan
| | - 俊丞 施
- 上海理工大学机械工程学院,上海 200093School of Mechanical Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China
| | - 丽 高
- 上海理工大学图书馆,上海 200093Library, University of Shanghai for Science and Technology, Shanghai 200093, China
- 上海理工大学光电与计算机学院,上海 200093School of Optical-Electrical and Computer Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China
| | - 伟铭 何
- 上海理工大学机械工程学院,上海 200093School of Mechanical Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China
- 日本中央大学理工学部精密工学 科,日本 东京 112-0003Faculty of Science and Engineering, Chuo University, Tokyo 112-0003, Japan
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Zhang Y, Li J, Wei S, Zhou F, Li D. Heartbeats Classification Using Hybrid Time-Frequency Analysis and Transfer Learning Based on ResNet. IEEE J Biomed Health Inform 2021; 25:4175-4184. [PMID: 34077377 DOI: 10.1109/jbhi.2021.3085318] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
The classification of heartbeats is an important method for cardiac arrhythmia analysis. This study proposes a novel heartbeat classification method using hybrid time-frequency analysis and transfer learning based on ResNet-101. The proposed method has the following major advantages over the afore-mentioned methods: it avoids the need for manual features extraction in the traditional machine learning method, and it utilizes 2-D time-frequency diagrams which provide not only frequency and energy information but also preserve the morphological characteristic within the ECG recordings, and it owns enough deep to make better use of performance of CNN. The method deploys a hybrid time-frequency analysis of the Hilbert transform (HT) and the Wigner-Ville distribution (WVD) to transform 1-D ECG recordings into 2-D time-frequency diagrams which were then fed into a transfer learning classifier based on ResNet-101 for two classification tasks (i.e., 5 heartbeat categories assigned by the ANSI/AAMI standard (i.e., N, V, S, Q and F) and 14 original beat kinds of the MIT/BIH arrhythmia database). For 5 heartbeat categories classification, the results show the F1-score of N, V, S, Q and F categories are FN 0.9899, FV 0.9845, FS 0.9376, FQ 0.9968, FF 0.8889, respectively, and the overall F1-score is 0.9595 using the combination data balancing. The results show the average values for accuracy, sensitivity, specificity, predictive value and F1-score on test set for 14 beat kinds the MIT-BIH arrhythmia database are 99.75%, 91.36%, 99.85%, 90.81% and 0.9016, respectively. Compared with other methods, the proposed method can yield more accurate results.
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Jangra M, Dhull SK, Singh KK, Singh A, Cheng X. O-WCNN: an optimized integration of spatial and spectral feature map for arrhythmia classification. COMPLEX INTELL SYST 2021; 9:2685-2698. [PMID: 34777963 PMCID: PMC8075024 DOI: 10.1007/s40747-021-00371-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2020] [Accepted: 04/07/2021] [Indexed: 11/21/2022]
Abstract
The regular monitoring and accurate diagnosis of arrhythmia are critically important, leading to a reduction in mortality rate due to cardiovascular diseases (CVD) such as heart stroke or cardiac arrest. This paper proposes a novel convolutional neural network (CNN) model for arrhythmia classification. The proposed model offers the following improvements compared with traditional CNN models. Firstly, the multi-channel model can concatenate spectral and spatial feature maps. Secondly, the structural unit is composed of a depthwise separable convolution layer followed by activation and batch normalization layers. The structural unit offers effective utilization of network parameters. Also, the optimization of hyperparameters is done using Hyperopt library, based on Sequential Model-Based Global Optimization algorithm (SMBO). These improvements make the network more efficient and accurate for arrhythmia classification. The proposed model is evaluated using tenfold cross-validation following both subject-oriented inter-patient and class-oriented intra-patient evaluation protocols. Our model achieved 99.48% and 99.46% accuracy in VEB (ventricular ectopic beat) and SVEB (supraventricular ectopic beat) class classification, respectively. The model is compared with state-of-the-art models and has shown significant performance improvement.
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Affiliation(s)
- Manisha Jangra
- Department of Electronics and Communication Engineering, Guru Jambheshwar University of Science and Technology, Hisar, Haryana India
| | - Sanjeev Kumar Dhull
- Department of Electronics and Communication Engineering, Guru Jambheshwar University of Science and Technology, Hisar, Haryana India
| | - Krishna Kant Singh
- Faculty of Engineering and Technology, Jain (Deemed-to-be University), Bengaluru, India
| | - Akansha Singh
- Department of Computer Science Engineering, ASET, Amity University Uttar Pradesh, Noida, India
| | - Xiaochun Cheng
- Department of Computer Science, Middlesex University, London, UK
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Li Z, Zhang H. Automatic Detection for Multi-Labeled Cardiac Arrhythmia Based on Frame Blocking Preprocessing and Residual Networks. Front Cardiovasc Med 2021; 8:616585. [PMID: 33816573 PMCID: PMC8017170 DOI: 10.3389/fcvm.2021.616585] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2020] [Accepted: 02/15/2021] [Indexed: 11/20/2022] Open
Abstract
Introduction: Electrocardiograms (ECG) provide information about the electrical activity of the heart, which is useful for diagnosing abnormal cardiac functions such as arrhythmias. Recently, several algorithms based on advanced structures of neural networks have been proposed for auto-detecting cardiac arrhythmias, but their performance still needs to be further improved. This study aimed to develop an auto-detection algorithm, which extracts valid features from 12-lead ECG for classifying multiple types of cardiac states. Method: The proposed algorithm consists of the following components: (i) a preprocessing component that utilizes the frame blocking method to split an ECG recording into frames with a uniform length for all considered ECG recordings; and (ii) a binary classifier based on ResNet, which is combined with the attention-based bidirectional long-short term memory model. Result: The developed algorithm was trained and tested on ECG data of nine types of cardiac states, fulfilling a task of multi-label classification. It achieved an averaged F1-score and area under the curve at 0.908 and 0.974, respectively. Conclusion: The frame blocking and bidirectional long-short term memory model represented an improved algorithm compared with others in the literature for auto-detecting and classifying multi-types of cardiac abnormalities.
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Affiliation(s)
- Zicong Li
- Biological Physics Group, Department of Physics and Astronomy, The University of Manchester, Manchester, United Kingdom
| | - Henggui Zhang
- Biological Physics Group, Department of Physics and Astronomy, The University of Manchester, Manchester, United Kingdom.,Peng Cheng Laboratory, Shenzhen, China.,Key Laboratory of Medical Electrophysiology of Ministry of Education and Medical Electrophysiological Key Laboratory of Sichuan Province, Institute of Cardiovascular Research, Southwest Medical University, Luzhou, China
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Electrocardiogram heartbeat classification based on a deep convolutional neural network and focal loss. Comput Biol Med 2020; 123:103866. [DOI: 10.1016/j.compbiomed.2020.103866] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2020] [Revised: 06/14/2020] [Accepted: 06/14/2020] [Indexed: 01/23/2023]
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