1
|
Akhtar N, Shadab M, Bhatti N, Sajid Ansarì M, Siddiqui MB. Biotechnological frontiers in harnessing allelopathy for sustainable crop production. Funct Integr Genomics 2024; 24:155. [PMID: 39227468 DOI: 10.1007/s10142-024-01418-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2024] [Revised: 08/06/2024] [Accepted: 08/08/2024] [Indexed: 09/05/2024]
Abstract
Allelopathy, the phenomenon in which plants release biochemical compounds that influence the growth and development of neighbouring plants, presents promising opportunities for revolutionizing agriculture towards sustainability. This abstract explores the role of biotechnological advancements in unlocking the potential of allelopathy for sustainable crop production and its applications in agriculture, ecology, and natural resource management. By combining molecular, genetic, biochemical, and bioinformatic tools, researchers can unravel the complexities of allelopathic interactions and their potential for sustainable crop production and environmental stewardship. The development of novel management methods for weed control is getting a lot of attention with the introduction of new genetic technologies such as Gene drive, Transgene technologies, Gene silencing, Marker-assisted selection (MAS), and Clustered regularly interspaced short palindromic repeats (CRISPR-Cas9). By strengthening competitive characteristics these tools hold great promise for boosting crops' ability to compete with weeds. Considering recent literature, this review highlights the genetic, transcriptomics, and metabolomics approaches to allelopathy. Employing allelopathic properties in agriculture offer sustainable benefits like natural weed management, pest management, and reduced chemical pollution, but challenges include environmental factors, toxicity, regulatory hurdles, and limited resources. Effective integration requires continued research, regulatory support, and farmer education. Also, we aimed to identify the biotechnological domains requiring more investigation and to provide the basis for future advances through this assessment.
Collapse
Affiliation(s)
- Nazish Akhtar
- Allelopathy and Plant Taxonomy Laboratory, Department of Botany, Aligarh Muslim University, Aligarh, India
| | - Mo Shadab
- Allelopathy and Plant Taxonomy Laboratory, Department of Botany, Aligarh Muslim University, Aligarh, India.
| | - Nourien Bhatti
- Allelopathy and Plant Taxonomy Laboratory, Department of Botany, Aligarh Muslim University, Aligarh, India
| | - Moh Sajid Ansarì
- Section of Environmental pollution research unit, Department of Botany, Aligarh Muslim University, Aligarh, India
| | - M B Siddiqui
- Allelopathy and Plant Taxonomy Laboratory, Department of Botany, Aligarh Muslim University, Aligarh, India
| |
Collapse
|
2
|
Kumam Y, Trick HN, Vara Prasad P, Jugulam M. Transformative Approaches for Sustainable Weed Management: The Power of Gene Drive and CRISPR-Cas9. Genes (Basel) 2023; 14:2176. [PMID: 38136999 PMCID: PMC10742955 DOI: 10.3390/genes14122176] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2023] [Revised: 11/25/2023] [Accepted: 12/01/2023] [Indexed: 12/24/2023] Open
Abstract
Weeds can negatively impact crop yields and the ecosystem's health. While many weed management strategies have been developed and deployed, there is a greater need for the development of sustainable methods for employing integrated weed management. Gene drive systems can be used as one of the approaches to suppress the aggressive growth and reproductive behavior of weeds, although their efficacy is yet to be tested. Their popularity in insect pest management has increased, however, with the advent of CRISPR-Cas9 technology, which provides specificity and precision in editing the target gene. This review focuses on the different types of gene drive systems, including the use of CRISPR-Cas9-based systems and their success stories in pest management, while also exploring their possible applications in weed species. Factors that govern the success of a gene drive system in weeds, including the mode of reproduction, the availability of weed genome databases, and well-established transformation protocols are also discussed. Importantly, the risks associated with the release of weed populations with gene drive-bearing alleles into wild populations are also examined, along with the importance of addressing ecological consequences and ethical concerns.
Collapse
Affiliation(s)
- Yaiphabi Kumam
- Department of Agronomy, Kansas State University, Manhattan, KS 66506, USA; (Y.K.); (P.V.V.P.)
| | - Harold N Trick
- Department of Plant Pathology, Kansas State University, Manhattan, KS 66506, USA;
| | - P.V. Vara Prasad
- Department of Agronomy, Kansas State University, Manhattan, KS 66506, USA; (Y.K.); (P.V.V.P.)
| | - Mithila Jugulam
- Department of Agronomy, Kansas State University, Manhattan, KS 66506, USA; (Y.K.); (P.V.V.P.)
| |
Collapse
|
3
|
Legros M, Marshall JM, Macfadyen S, Hayes KR, Sheppard A, Barrett LG. Gene drive strategies of pest control in agricultural systems: Challenges and opportunities. Evol Appl 2021; 14:2162-2178. [PMID: 34603490 PMCID: PMC8477592 DOI: 10.1111/eva.13285] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2020] [Revised: 06/24/2021] [Accepted: 07/19/2021] [Indexed: 12/18/2022] Open
Abstract
Recent advances in gene-editing technologies have opened new avenues for genetic pest control strategies, in particular around the use of gene drives to suppress or modify pest populations. Significant uncertainty, however, surrounds the applicability of these strategies to novel target species, their efficacy in natural populations and their eventual safety and acceptability as control methods. In this article, we identify issues associated with the potential use of gene drives in agricultural systems, to control pests and diseases that impose a significant cost to agriculture around the world. We first review the need for innovative approaches and provide an overview of the most relevant biological and ecological traits of agricultural pests that could impact the outcome of gene drive approaches. We then describe the specific challenges associated with using gene drives in agricultural systems, as well as the opportunities that these environments may offer, focusing in particular on the advantages of high-threshold gene drives. Overall, we aim to provide a comprehensive view of the potential opportunities and the remaining uncertainties around the use of gene drives in agricultural systems.
Collapse
Affiliation(s)
- Mathieu Legros
- CSIRO Agriculture and FoodCanberraACTAustralia
- CSIRO Synthetic Biology Future Science PlatformCanberraACTAustralia
| | - John M. Marshall
- Divisions of Biostatistics and Epidemiology – School of Public HealthUniversity of CaliforniaBerkeleyCAUSA
| | | | | | | | - Luke G. Barrett
- CSIRO Agriculture and FoodCanberraACTAustralia
- CSIRO Synthetic Biology Future Science PlatformCanberraACTAustralia
| |
Collapse
|
4
|
Harms NE, Knight IA, Pratt PD, Reddy AM, Mukherjee A, Gong P, Coetzee J, Raghu S, Diaz R. Climate Mismatch between Introduced Biological Control Agents and Their Invasive Host Plants: Improving Biological Control of Tropical Weeds in Temperate Regions. INSECTS 2021; 12:insects12060549. [PMID: 34204761 PMCID: PMC8231509 DOI: 10.3390/insects12060549] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/08/2021] [Revised: 05/20/2021] [Accepted: 06/07/2021] [Indexed: 12/15/2022]
Abstract
Simple Summary Mismatched distributions between biological control agents and their host plants occur for a variety of reasons but are often linked to climate, specifically differences in their low-temperature tolerances. How to measure and use low-temperature tolerances of control agents to inform agent prioritization, selection for redistribution, or predict efficacy is vitally important, but has not been previously synthesized in a single source. We discuss causes of climate mismatches between agents and target weeds, the traditional and non-traditional approaches that could be used to decrease the degree of mismatch and improve control, and regulatory issues to consider when taking such approaches. We also discuss the variety of cold tolerance metrics, their measurement and ecological value, and the types of modeling that can be carried out to improve predictions about potential distributions of agents. We also briefly touch on molecular bases for cold tolerance and opportunities for improving cold tolerance of agents using modern molecular tools. Abstract Many weed biological control programs suffer from large-scale spatial variation in success due to restricted distributions or abundances of agents in temperate climates. For some of the world’s worst aquatic weeds, agents are established but overwintering conditions limit their survival in higher latitudes or elevations. The resulting need is for new or improved site- or region-specific biological control tools. Here, we review this challenge with a focus on low-temperature limitations of agents and propose a roadmap for improving success. Investigations across spatial scales, from global (e.g., foreign exploration), to local (selective breeding), to individual organisms (molecular modification), are discussed. A combination of traditional (foreign) and non-traditional (introduced range) exploration may lead to the discovery and development of better-adapted agent genotypes. A multivariate approach using ecologically relevant metrics to quantify and compare cold tolerance among agent populations is likely required. These data can be used to inform environmental niche modeling combined with mechanistic modeling of species’ fundamental climate niches and life histories to predict where, when, and at what abundance agents will occur. Finally, synthetic and systems biology approaches in conjunction with advanced modern genomics, gene silencing and gene editing technologies may be used to identify and alter the expression of genes enhancing cold tolerance, but this technology in the context of weed biological control has not been fully explored.
Collapse
Affiliation(s)
- Nathan E. Harms
- Aquatic Ecology and Invasive Species Branch, Environmental Laboratory, US Army Engineer Research and Development Center, Vicksburg, MS 39180, USA;
- Correspondence: ; Tel.: +01-601-634-2976
| | - Ian A. Knight
- Aquatic Ecology and Invasive Species Branch, Environmental Laboratory, US Army Engineer Research and Development Center, Vicksburg, MS 39180, USA;
| | - Paul D. Pratt
- Invasive Species and Pollinator Health Research Unit, United States Department of Agriculture, Agricultural Research Service, Albany, CA 94710, USA; (P.D.P.); (A.M.R.)
| | - Angelica M. Reddy
- Invasive Species and Pollinator Health Research Unit, United States Department of Agriculture, Agricultural Research Service, Albany, CA 94710, USA; (P.D.P.); (A.M.R.)
| | | | - Ping Gong
- Environmental Processes Branch, Environmental Laboratory, US Army Engineer Research and Development Center, Vicksburg, MS 39180, USA;
| | - Julie Coetzee
- Centre for Biological Control, Botany Department, Rhodes University, Grahamstown 6140, South Africa;
| | - S. Raghu
- CSIRO Health & Biosecurity, Brisbane 4001, Australia;
| | - Rodrigo Diaz
- Department of Entomology, Louisiana State University, Baton Rouge, LA 70803, USA;
| |
Collapse
|