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Zhang P, Chen C, Feng M, Sun C, Xu X. Hydroxide and Hydronium Ions Modulate the Dynamic Evolution of Nitrogen Nanobubbles in Water. J Am Chem Soc 2024; 146:19537-19546. [PMID: 38949461 DOI: 10.1021/jacs.4c06641] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/02/2024]
Abstract
It has been widely recognized that the pH environment influences the nanobubble dynamics and hydroxide ions adsorbed on the surface may be responsible for the long-term survival of the nanobubbles. However, understanding the distribution of hydronium and hydroxide ions in the vicinity of a bulk nanobubble surface at a microscopic scale and the consequent impact of these ions on the nanobubble behavior remains a challenging endeavor. In this study, we carried out deep potential molecular dynamics simulations to explore the behavior of a nitrogen nanobubble under neutral, acidic, and alkaline conditions and the inherent mechanism, and we also conducted a theoretical thermodynamic and dynamic analysis to address constraints related to simulation duration. Our simulations and theoretical analyses demonstrate a trend of nanobubble dissolution similar to that observed experimentally, emphasizing the limited dissolution of bulk nanobubbles in alkaline conditions, where hydroxide ions tend to reside slightly farther from the nanobubble surface than hydronium ions, forming more stable hydrogen bond networks that shield the nanobubble from dissolution. In acidic conditions, the hydronium ions preferentially accumulating at the nanobubble surface in an orderly manner drive nanobubble dissolution to increase the entropy of the system, and the dissolved nitrogen molecules further strengthen the hydrogen bond networks of systems by providing a hydrophobic environment for hydronium ions, suggesting both entropy and enthalpy effects contribute to the instability of nanobubbles under acidic conditions. These results offer fresh insights into the double-layer distribution of hydroxide and hydronium near the nitrogen-water interface that influences the dynamic behavior of bulk nanobubbles.
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Affiliation(s)
- Pengchao Zhang
- Center for Combustion Energy, Department of Energy and Power Engineering, and Key Laboratory for Thermal Science and Power Engineering of Ministry of Education, Tsinghua University, Beijing 100084, China
| | - Changsheng Chen
- Center for Combustion Energy, Department of Energy and Power Engineering, and Key Laboratory for Thermal Science and Power Engineering of Ministry of Education, Tsinghua University, Beijing 100084, China
| | - Muye Feng
- School of Mechanical and Power Engineering, Nanjing Tech University, Nanjing 211816, China
| | - Chao Sun
- Center for Combustion Energy, Department of Energy and Power Engineering, and Key Laboratory for Thermal Science and Power Engineering of Ministry of Education, Tsinghua University, Beijing 100084, China
- New Cornerstone Science Laboratory, Tsinghua University, Beijing 100084, China
- Department of Engineering Mechanics, School of Aerospace Engineering, Tsinghua University, Beijing 100084, China
| | - Xuefei Xu
- Center for Combustion Energy, Department of Energy and Power Engineering, and Key Laboratory for Thermal Science and Power Engineering of Ministry of Education, Tsinghua University, Beijing 100084, China
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de Souza BB, Meegoda J. Insights into PFAS environmental fate through computational chemistry: A review. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 926:171738. [PMID: 38494023 DOI: 10.1016/j.scitotenv.2024.171738] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2023] [Revised: 02/28/2024] [Accepted: 03/14/2024] [Indexed: 03/19/2024]
Abstract
Per- and polyfluoroalkyl substances (PFAS) are widely used chemicals that exhibit exceptional chemical and thermal stability. However, their resistance to degradation has led to their widespread environmental contamination. PFAS also negatively affect the environment and other organisms, highlighting the need for effective remediation methods to mitigate their presence and prevent further contamination. Computational chemistry methods, such as Density Functional Theory (DFT) and Molecular Dynamics (MD) offer valuable tools for studying PFAS and simulating their interactions with other molecules. This review explores how computational chemistry methods contribute to understanding and tackling PFAS in the environment. PFAS have been extensively studied using DFT and MD, each method offering unique advantages and computational limitations. MD simulates large macromolecules systems however it lacks the ability model chemical reactions, while DFT provides molecular insights however at a high computational cost. The integration of DFT with MD shows promise in predicting PFAS behavior in different environments. This work summarizes reported studies on PFAS compounds, focusing on adsorption, destruction, and bioaccumulation, highlighting contributions of computational methods while discussing the need for continued research. The findings emphasize the importance of computational chemistry in addressing PFAS contamination, guiding risk assessments, and informing future research and innovations in this field.
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Affiliation(s)
- Bruno Bezerra de Souza
- John A. Reif, Jr. Department of Civil and Environmental Engineering, New Jersey Institute of Technology, Newark, NJ 07102, USA
| | - Jay Meegoda
- John A. Reif, Jr. Department of Civil and Environmental Engineering, New Jersey Institute of Technology, Newark, NJ 07102, USA.
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Sun Y, Zhang X, Huang R, Yang D, Kim J, Chen J, Ang EH, Li M, Li L, Song X. Revealing microscopic dynamics: in situ liquid-phase TEM for live observations of soft materials and quantitative analysis via deep learning. NANOSCALE 2024; 16:2945-2954. [PMID: 38236129 DOI: 10.1039/d3nr04480g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2024]
Abstract
In various domains spanning materials synthesis, chemical catalysis, life sciences, and energy materials, in situ transmission electron microscopy (TEM) methods exert a profound influence. These methodologies enable the real-time observation and manipulation of gas-phase and liquid-phase reactions at the nanoscale, facilitating the exploration of pivotal reaction mechanisms. Fundamental research areas like crystal nucleation, growth, etching, and self-assembly have greatly benefited from these techniques. Additionally, their applications extend across diverse fields such as catalysis, batteries, bioimaging, and drug delivery kinetics. However, the intricate nature of 'soft matter' presents a challenge due to the unique molecular properties and dynamic behavior of these substances that remain insufficiently understood. Investigating soft matter within in situ liquid-phase TEM settings demands further exploration and advancement compared to other research domains. This research harnesses the potential of in situ liquid-phase TEM technology while integrating deep learning methodologies to comprehensively analyze the quantitative aspects of soft matter dynamics. This study centers on diverse phenomena, encompassing surfactant molecule nucleation, block copolymer behavior, confinement-driven self-assembly, and drying processes. Furthermore, deep learning techniques are employed to precisely analyze Ostwald ripening and digestive ripening dynamics. The outcomes of this study not only deepen the understanding of soft matter at its fundamental level but also serve as a pivotal foundation for developing innovative functional materials and cutting-edge devices.
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Affiliation(s)
- Yangyang Sun
- School of Mathematics, Statistics and Mechanics, Beijing University of Technology, Beijing 100124, China.
| | - Xingyu Zhang
- School of Mathematics, Statistics and Mechanics, Beijing University of Technology, Beijing 100124, China.
| | - Rui Huang
- School of Materials Science and Engineering, Hefei University of Technology, Anhui Province, 230009, China.
| | - Dahai Yang
- School of Materials Science and Engineering, Hefei University of Technology, Anhui Province, 230009, China.
| | - Juyeong Kim
- Department of Chemistry and Research Institute of Natural Sciences, Gyeongsang National University, Jinju 52828, South Korea
| | - Junhao Chen
- School of Materials Science and Engineering, Hefei University of Technology, Anhui Province, 230009, China.
| | - Edison Huixiang Ang
- Natural Sciences and Science Education, National Institute of Education, Nanyang Technological University, Singapore 637616, Singapore
| | - Mufan Li
- Institute of Physical Chemistry, the College of Chemistry and Molecular Engineering, Pecking University, Beijing, 100871, China
| | - Lin Li
- Beijing Shunce Technology Co., Ltd, Beijing, 102629, China
| | - Xiaohui Song
- School of Materials Science and Engineering, Hefei University of Technology, Anhui Province, 230009, China.
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Zhou Y, Huang M, Tian F, Shi X, Zhang X. Einstein-Stokes relation for small bubbles at the nanoscale. J Chem Phys 2024; 160:054109. [PMID: 38341701 DOI: 10.1063/5.0189490] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Accepted: 01/15/2024] [Indexed: 02/13/2024] Open
Abstract
As the physicochemical properties of ultrafine bubble systems are governed by their size, it is crucial to determine the size and distribution of such bubble systems. At present, the size or size distribution of nanometer-sized bubbles in suspension is often measured by either dynamic light scattering or the nanoparticle tracking analysis. Both techniques determine the bubble size via the Einstein-Stokes equation based on the theory of the Brownian motion. However, it is not yet clear to which extent the Einstein-Stokes equation is applicable for such ultrafine bubbles. In this work, using atomic molecular dynamics simulation, we evaluate the applicability of the Einstein-Stokes equation for gas nanobubbles with a diameter less than 10 nm, and for a comparative analysis, both vacuum nanobubbles and copper nanoparticles are also considered. The simulation results demonstrate that the diffusion coefficient for rigid nanoparticles in water is found to be highly consistent with the Einstein-Stokes equation, with slight deviation only found for nanoparticle with a radius less than 1 nm. For nanobubbles, including both methane and vacuum nanobubbles, however, large deviation from the Einstein-Stokes equation is found for the bubble radius larger than 3 nm. The deviation is attributed to the deformability of large nanobubbles that leads to a cushioning effect for collision-induced bubble diffusion.
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Affiliation(s)
- Youbin Zhou
- State Key Laboratory of Organic-Inorganic Composites, Beijing University of Chemical Technology, Beijing 100029, China
| | - Mengyuan Huang
- State Key Laboratory of Organic-Inorganic Composites, Beijing University of Chemical Technology, Beijing 100029, China
- Institute of Fluid Dynamics, Helmholtz-Zentrum Dresden-Rossendorf, Dresden 01328, Germany
| | - Falin Tian
- Laboratory of Theoretical and Computational Nanoscience, National Center for Nanoscience and Technology, Chinese Academy of Sciences, Beijing 100190, People's Republic of China
| | - Xinghua Shi
- Laboratory of Theoretical and Computational Nanoscience, National Center for Nanoscience and Technology, Chinese Academy of Sciences, Beijing 100190, People's Republic of China
| | - Xianren Zhang
- State Key Laboratory of Organic-Inorganic Composites, Beijing University of Chemical Technology, Beijing 100029, China
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Bezerra de Souza B, Aluthgun Hewage S, A Kewalramani J, Ct van Duin A, N Meegoda J. A ReaxFF-based molecular dynamics study of the destruction of PFAS due to ultrasound. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2023; 333:122026. [PMID: 37315883 DOI: 10.1016/j.envpol.2023.122026] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2023] [Revised: 06/05/2023] [Accepted: 06/10/2023] [Indexed: 06/16/2023]
Abstract
This work uses a computational approach to provide a mechanistic explanation for the experimentally observed destruction of per- and polyfluoroalkyl substances (PFAS) in water due to ultrasound. The PFAS compounds have caused a strong public and regulatory response due to their ubiquitous presence in the environment and toxicity to humans. In this research, ReaxFF -based Molecular Dynamics simulation under several temperatures ranging from 373 K to 5,000 K and different environments such as water vapor, O2, N2, and air were performed to understand the mechanism of PFAS destruction. The simulation results showed greater than 98% PFAS degradation was observed within 8 ns under a temperature of 5,000 K in a water vapor phase, replicating the observed micro/nano bubbles implosion and PFAS destruction during the application of ultrasound. Additionally, the manuscript discusses the reaction pathways and how PFAS degradation evolves providing a mechanistic basis for the destruction of PFAS in water due to ultrasound. The simulation showed that small chain molecules C1 and C2 fluoro-radical products are the most dominant species over the simulated period and are the impediment to an efficient degradation of PFAS. Furthermore, this research confirms the empirical findings observations that the mineralization of PFAS molecules occurs without the generation of byproducts. These findings highlight the potential of virtual experiments in complementing laboratory experiments and theoretical projections to enhance the understanding of PFAS mineralization during the application of ultrasound.
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Affiliation(s)
- Bruno Bezerra de Souza
- Department of Civil and Environmental Engineering, New Jersey Institute of Technology, Newark, NJ, USA
| | - Shaini Aluthgun Hewage
- Department of Civil and Environmental Engineering, New Jersey Institute of Technology, Newark, NJ, USA
| | - Jitendra A Kewalramani
- Department of Civil and Environmental Engineering, New Jersey Institute of Technology, Newark, NJ, USA
| | - Adri Ct van Duin
- Department of Mechanical Engineering, The Pennsylvania State University, State College, PA, USA
| | - Jay N Meegoda
- Department of Civil and Environmental Engineering, New Jersey Institute of Technology, Newark, NJ, USA.
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Tegladza ID, Lin G, Liu C, Gu X. Control of crystal nucleation, size and morphology using micro−/nanobubbles as green additives – a review. Sep Purif Technol 2023. [DOI: 10.1016/j.seppur.2023.123232] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
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Yen TH, Chen YL. Analysis of Gas Nanoclusters in Water Using All-Atom Molecular Dynamics. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2022; 38:13195-13205. [PMID: 36255233 DOI: 10.1021/acs.langmuir.2c02042] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
The Young-Laplace equation suggests that nanosized gas clusters would dissolve under the effects of perturbation. The fact that nanobubbles are observed raises questions as to the mechanism underlying their stability. In the current study, we used all-atom molecular dynamics simulations to investigate the gas-water interfacial properties of gas clusters. We employed the instantaneous coarse-graining method to define the fluctuating boundaries and analyze the deformation of gas clusters. Fourier transform analysis of the cluster morphology revealed that the radius and morphology deformation variations exhibit power law relationships with the vibrational frequency, indicating that the surface energy dissipated through morphology variations. Increasing pressure in the liquid region was found to alter the network of water molecules at the interface, whereas increasing pressure in the gas region did not exhibit this effect. The overall gas concentration was oversaturated and proportional to the gas density inside the clusters. However, the result of comparison with Henry's law reveals that the gas pressure at the interface reduced by the interfacial effects is much lower than that inside the gas region, thus reducing the demanding degree of oversaturation. Originating from the interfacial charge allocation, the magnitude of the electrostatic stress is greater than that of the gas pressure inside the cluster. However, the magnitude of the reversed tension induced by electrostatic stress is far below the value of interfacial tension. The potential of mean force (PMF) profiles revealed that a barrier potential at the interface hindered gas particles from escaping the cluster. Several effects contribute to stabilizing the gas clusters in water, including high-frequency morphological deformation, electrostatic stress, reduced interfacial tension, and gas oversaturation conditions. Our results suggest that gas clusters can exist in water under gas oversaturation conditions in the absence of hydrophobic contaminants or pinning charges at interfaces.
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Affiliation(s)
- Tsu-Hsu Yen
- Department of Marine Science, R.O.C. Naval Academy, Zuoying, Kaohsiung, Taiwan, R.O.C.813
| | - Yeng-Long Chen
- Institute of Physics, Academia Sinica, Taipei, Taiwan, R.O.C.11529
- Department of Chemical Engineering, National Tsing-Hua University, Hsinchu, Taiwan, R.O.C30013
- Physics Division, National Center for Theoretical Sciences, Taipei, Taiwan, R.O.C10617
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