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Li MR, Men SH, Wang ZY, Liu C, Zhou GR, Yan ZG. The application of human-derived cell lines in neurotoxicity studies of environmental pollutants. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 912:168839. [PMID: 38036138 DOI: 10.1016/j.scitotenv.2023.168839] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Revised: 11/17/2023] [Accepted: 11/22/2023] [Indexed: 12/02/2023]
Abstract
As industrial and societal advancements progress, an increasing number of environmental pollutants linked to human existence have been substantiated to elicit neurotoxicity and developmental neural toxicity. For research in this field, human-derived neural cell lines have become excellent in vitro models. This study examines the utilization of immortalized cell lines, specifically the SH-SY5Y human neuroblastoma cell line, and neural cells derived from human pluripotent stem cells, in the investigation of neurotoxicity and developmental neural toxicity caused by environmental pollutants. The study also explores the culturing techniques employed for these cell lines and provides an overview of the standardized assays used to assess various biological endpoints. The environmental pollutants involved include a variety of organic compounds, heavy metals, and microplastics. The utilization of cell lines derived from human sources holds significant significance in elucidating the neurotoxic effects of environmental pollutants and the underlying mechanisms. Finally, we propose the possibility of improving the in vitro model of the human nervous system and the toxicity detection methods.
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Affiliation(s)
- Ming-Rui Li
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
| | - Shu-Hui Men
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
| | - Zi-Ye Wang
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
| | - Chen Liu
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
| | - Guo-Rui Zhou
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
| | - Zhen-Guang Yan
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China.
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Li Y, Koopal LK, Chai Y, Tan W, Wu C, Tang X, Chen Y. Spectroscopic investigation of conformational changes in urease caused by interaction with humic acid. Colloids Surf B Biointerfaces 2022; 215:112510. [PMID: 35462231 DOI: 10.1016/j.colsurfb.2022.112510] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2021] [Revised: 04/06/2022] [Accepted: 04/16/2022] [Indexed: 01/16/2023]
Abstract
Urease in soil interacts with humic acid (HA), which results in a change of the enzymatic activity and stability. However, knowledge on the conformational change of urease in the presence of HA is still lacking. Therefore, the structure of urease (net zero charge at pH 5.2) interacting with HA and the microenvironments of the tyrosine (Tyr) and tryptophane (Trp) residues were investigated at pH 6.7 and 8.0 and 0.5 and 50 mmol L-1 KCl using spectroscopic techniques. Fluorescence intensity of urease was progressively inhibited by HA with increasing mass ratio f of HA/urease. Moreover, quenching of urease fluorescence by HA was strongest at pH 6.7 (and 50 mmol L-1 KCl) where the hydrophobic attraction was counteracted by only a weak electrostatic repulsion. HA exerted only a minor effect on the positions of the maximum excitation bands for Tyr and Trp residues, indicating insignificant changes in the microenvironment of these residues in the presence of HA. At pH 6.7, the amide I and amide II bands were inhibited by HA. Curve-fitting of the amide I band of urease in complexes indicated that the percentages of α-helix, β-sheet and β-turn were changed. At pH 8 HA had little effect on the circular dichroism and attenuated total reflectance Fourier transform infrared spectra of urease. At this pH the interaction between urease and HA was weak due to the relatively strong electrostatic repulsion and the conformational change was insignificant. The present results increase our understanding of negatively charged protein behavior in natural environments dominated by humic substances.
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Affiliation(s)
- Yan Li
- Institute of Environment Resource and Soil Fertilizer, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China; National Agricultural Experimental Station for Soil Quality, Jiaxing 314000, China
| | - Luuk K Koopal
- Physical Chemistry and Soft Matter, Wageningen University and Research, Stippeneng 4, 6708 WE Wageningen, the Netherlands
| | - Yanjun Chai
- Key Laboratory of Recycling and Ecological Treatment of Waste Biomass of Zhejiang Province, School of Environment and Natural Resources, Zhejiang University of Science and Technology, Hangzhou 310023, China
| | - Wenfeng Tan
- College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China.
| | - Chunyan Wu
- Institute of Environment Resource and Soil Fertilizer, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China; National Agricultural Experimental Station for Soil Quality, Jiaxing 314000, China
| | - Xu Tang
- Institute of Environment Resource and Soil Fertilizer, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China; National Agricultural Experimental Station for Soil Quality, Jiaxing 314000, China
| | - Yi Chen
- Institute of Environment Resource and Soil Fertilizer, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China; National Agricultural Experimental Station for Soil Quality, Jiaxing 314000, China.
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Li J, Zhu L, Murtaza A, Iqbal A, Zhang J, Xu X, Pan S, Hu W. The effect of high pressure carbon dioxide on the inactivation kinetics and structural alteration of phenylalanine ammonia-lyase from Chinese water chestnut: An investigation using multi-spectroscopy and molecular docking methods. INNOV FOOD SCI EMERG 2022. [DOI: 10.1016/j.ifset.2022.102970] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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Tabe H, Oshima H, Ikeyama S, Amao Y, Yamada Y. Enhanced catalytic stability of acid phosphatase immobilized in the mesospaces of a SiO2-nanoparticles assembly for catalytic hydrolysis of organophosphates. MOLECULAR CATALYSIS 2021. [DOI: 10.1016/j.mcat.2021.111669] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Li Y, Koopal LK, Chen Y, Shen A, Tan W. Conformational modifications of lysozyme caused by interaction with humic acid studied with spectroscopy. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 768:144858. [PMID: 33453531 DOI: 10.1016/j.scitotenv.2020.144858] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2020] [Revised: 12/17/2020] [Accepted: 12/20/2020] [Indexed: 06/12/2023]
Abstract
Modification of enzyme/protein conformation will affect the activities and functionality of enzymes. Previous studies have shown that the activity of lysozyme (LSZ) in the presence of humic acid (HA) is largely determined by the mass ratio of HA/LSZ (f = mHA/mLSZ), pH and ionic strength. Here the interaction and conformation of LSZ in HA/LSZ-complex/aggregate (HA/LSZ-c/a) were investigated by spectroscopic techniques at (initial) pH 5 and 8 and ionic strength 5 mmol/L. The results indicated a strong interaction between HA and LSZ. Circular dichroism (CD), and attenuated total reflectance Fourier transform infrared (ATR-FTIR) spectroscopy showed that the helix content reached a minimum at the mass ratio of its iso electric point (IEP) at given initial pH, fIEP,pHi. The changes in β-sheet and random coil of HA/LSZ-c/a were opposite with increasing f. The minimum of helix content at fIEP,pHi corresponded with the minimum LSZ activity and maximum aggregate size of HA/LSZ-c/a. UV-vis spectra and fluorescence measurements indicated that the amino acid residues (especially for tyrosine) in LSZ were in a more hydrophobic microenvironment before fIEP,pHi due to the formation of HA/LSZ-c/a, while were gradually exposed to a more polar microenvironment beyond fIEP,pHi with the disaggregation of HA/LSZ-c/a. HA and LSZ interaction caused a more hydrophobic microenvironment for the amino acid residues at initial pH 8. This study improves our understanding of enzyme/protein behavior in the natural environment.
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Affiliation(s)
- Yan Li
- Institute of Environment Resource and Soil Fertilizer, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China; National Agricultural Experimental Station for Soil Quality, Jiaxing 314000, China
| | - Luuk K Koopal
- Physical Chemistry and Soft Matter, Wageningen University and Research, Stippeneng 4, 6708 WE Wageningen, the Netherlands
| | - Yi Chen
- Institute of Environment Resource and Soil Fertilizer, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China; National Agricultural Experimental Station for Soil Quality, Jiaxing 314000, China.
| | - Alin Shen
- Institute of Environment Resource and Soil Fertilizer, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China
| | - Wenfeng Tan
- College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China.
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Ahmad F, Muhmood T, Mahmood A. Deciphering the mechanism of hafnium oxide nanoparticles perturbation in the bio-physiological microenvironment of catalase. NANO EXPRESS 2020. [DOI: 10.1088/2632-959x/abbf60] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Abstract
Nanoparticles (NPs) are extensively being used in state-of-the-art nano-based therapies, modern electronics, and consumer products, so can be released into the environment with enhancement interaction with humans. Hence, the exposures to these multifunctional NPs lead to changes in protein structure and functionality, raising serious health issues. This study thoroughly investigated the interaction and adsorption of catalase (CAT) with HfO2-NPs by circular dichroism (CD), Fourier transform infrared (FTIR), absorption, and fluorescence spectroscopic techniques. The results indicate that HfO2 NPs cause fluorescence quenching in CAT by a static quenching mechanism. The negative values of Vant Hoff thermodynamic expressions (ΔH
o
, ΔS
o
, and ΔG
o
) corroborate the spontaneity and exothermic nature of static quenching driven by van der Waals forces and hydrogen bonding. Also, FTIR, UV-CD, and UV–visible spectroscopy techniques confirmed that HfO2 NPs binding could induce microenvironment perturbations leading to secondary and tertiary conformation changes in CAT. Furthermore, synchronous fluorescence spectroscopy confirmed the significant changes in the microenvironment around tryptophan (Trp) residue caused by HfO2 NPs. The time depending denaturing of CAT biochemistry through HfO2-NPs was investigated by assaying catalase activity elucidates the potential toxic action of HfO2-NPs at the macromolecular level. Briefly, this provides an empathetic knowledge of the nanotoxicity and likely health effects of HfO2 NPs exposure.
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Zhang SF, Chen Y, Xie ZX, Zhang H, Lin L, Wang DZ. Unraveling the molecular mechanism of the response to changing ambient phosphorus in the dinoflagellate Alexandrium catenella with quantitative proteomics. J Proteomics 2019; 196:141-149. [PMID: 30414514 DOI: 10.1016/j.jprot.2018.11.004] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2018] [Revised: 10/30/2018] [Accepted: 11/05/2018] [Indexed: 10/27/2022]
Abstract
Phosphorus (P) is a key macronutrient limiting cell growth and bloom formation of marine dinoflagellates. Physiological responses to changing ambient P have been investigated in dinoflagellates; however, the molecular mechanisms behind these responses remain limited. Here, we compared the protein expression profiles of a marine dinoflagellate Alexandrium catenella grown in inorganic P-replete, P-deficient, and inorganic- and organic-P resupplied conditions using an iTRAQ-based quantitative proteomic approach. P deficiency inhibited cell growth and enhanced alkaline phosphatase activity (APA) but had no effect on photosynthetic efficiency. After P resupply, the P-deficient cells recovered growth rapidly and APA decreased. Proteins involved in sphingolipid metabolism, organic P utilization, starch and sucrose metabolism, and photosynthesis were up-regulated in the P-deficient cells, while proteins associated with protein synthesis, nutrient assimilation and energy metabolism were down-regulated. The responses of the P-deficient A. catenella to the resupply of organic and inorganic P presented significant differences: more biological processes were enhanced in the organic P-resupplied cells than those in the inorganic P-resupplied cells; A. catenella might directly utilize G-6-P for nucleic acid synthesis through the pentose phosphate pathway. Our results indicate that A. catenella has evolved diverse adaptive strategies to ambient P deficiency and specific mechanisms to utilize dissolved organic P, which might be an important reason resulting in A. catenella bloom in the low inorganic P environment. BIOLOGICAL SIGNIFICANCE: The ability of marine dinoflagellates to utilize different phosphorus (P) species and adapt to ambient P deficiency determines their success in the ocean. In this study, we investigated the response mechanisms of a dinoflagellate Alexandrium catenella to ambient P deficiency, and resupply of inorganic- and organic-P at the proteome level. Our results indicated that A. catenella initiated multiple adaptive strategies to ambient P deficiency, e.g. utilizing nonphospholipids and glycosphingolipids instead of phospholipids, enhancing expression of acid phosphatase to utilize organic P, and reallocating intracellular energy. Proteome responses of the P-deficient A. catenella to resupply of inorganic- and organic-P differed significantly, indicating different utilization pathways of inorganic and organic P, A. catenella might directly utilize low molecular weight organic P, such as G-6-P as both P and carbon sources.
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Affiliation(s)
- Shu-Feng Zhang
- State Key Laboratory of Marine Environmental Science, College of the Environment and Ecology, Xiamen University, Xiamen, 361102, China
| | - Ying Chen
- State Key Laboratory of Marine Environmental Science, College of the Environment and Ecology, Xiamen University, Xiamen, 361102, China
| | - Zhang-Xian Xie
- State Key Laboratory of Marine Environmental Science, College of the Environment and Ecology, Xiamen University, Xiamen, 361102, China
| | - Hao Zhang
- State Key Laboratory of Marine Environmental Science, College of the Environment and Ecology, Xiamen University, Xiamen, 361102, China
| | - Lin Lin
- State Key Laboratory of Marine Environmental Science, College of the Environment and Ecology, Xiamen University, Xiamen, 361102, China
| | - Da-Zhi Wang
- State Key Laboratory of Marine Environmental Science, College of the Environment and Ecology, Xiamen University, Xiamen, 361102, China; Key Laboratory of Marine Ecology & Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China.
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Ahmad F, Zhou Y. Pitfalls and Challenges in Nanotoxicology: A Case of Cobalt Ferrite (CoFe 2O 4) Nanocomposites. Chem Res Toxicol 2017; 30:492-507. [PMID: 28118545 DOI: 10.1021/acs.chemrestox.6b00377] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
Nanotechnology is developing at a rapid pace with promises of a brilliant socio-economic future. The apprehensions of vivid future involvement with nanotechnology make nanoobjects ubiquitous in the macroscopic world of humans. Nanotechnology helps us to visualize the new mysterious horizons in engineering, sophisticated electronics, environmental remediation, biosensing, and nanomedicine. In all these hotspots, cobalt ferrite (CoFe) nanoparticles (NPs) are outstanding contestants because of their astonishing controllable physicochemical and magnetic properties with ease of synthesis methods. The extensive use of CoFe NPs may result in CoFe NPs easily penetrating the human body unintentionally by ingestion, inhalation, adsorption, etc. and intentionally being instilled into the human body during biomedical diagnostics and treatment. After being housed in the human body, it might induce oxidative stress, cytotoxicity, genotoxicity, inflammation, apoptosis, and developmental, metabolic and hormonal abnormalities. In this review, we compiled the toxicity knowledge of CoFe NPs aimed to provide the safe usage of this breed of nanomaterials.
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Affiliation(s)
- Farooq Ahmad
- College of Chemical Engineering, Zhejiang University of Technology , Hangzhou 310032, China.,State Key Laboratory of Metal Matrix Composites, School of Material Science and Engineering, Shanghai Jiao Tong University , 800 Dongchuan Road, Shanghai 200240, China
| | - Ying Zhou
- College of Chemical Engineering, Zhejiang University of Technology , Hangzhou 310032, China.,Research Center of Analysis and Measurement, Zhejiang University of Technology , 18 Chaowang Road, Hangzhou 310032, China
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