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Konopkina EA, Gopin AV, Pozdeev AS, Chernysheva MG, Kalle P, Pavlova EA, Kalmykov SN, Petrov VG, Borisova NE, Guda AA, Matveev PI. Kinetic features of solvent extraction by N,O-donor ligands of f-elements: a comparative study of diamides based on 1,10-phenanthroline and 2,2'-bipyridine. Phys Chem Chem Phys 2024; 26:2548-2559. [PMID: 38170859 DOI: 10.1039/d3cp05081e] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2024]
Abstract
A variant of microfluidic setup design for the study of extraction kinetics has been proposed. Mass transfer constants for Am(III) and Eu(III) and observed rate constants were obtained for N-,O-donor ligands featuring phenanthroline and bipyridyl cores. The possibility of determining rate constants for cations independently of each other makes it possible to observe the kinetic effect of separation. The extraction rate was found to be lower for the bipyridyl ligand, compared to phenanthroline. The values of the rotation barriers for the ligands were calculated using the DFT method. The values correlate with the obtained low extraction rate for the bipyridyl ligand. Also, crystallographic data showing anti-conformation for the bipyridyl ligand align with the kinetic data. Surface tension was also determined for the systems with the studied ligands. It is shown that at equal ligand concentrations, the value of surface tension agrees with the extraction rate. Furthermore, it is shown that for the bipyridyl ligand, prior contact of the organic phase with nitric acid significantly affects the surface tension.
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Affiliation(s)
- Ekaterina A Konopkina
- Department of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russian Federation.
| | - Alexander V Gopin
- Department of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russian Federation.
| | - Anton S Pozdeev
- Department of Chemistry and Biochemistry, Utah State University, 0300 Old Main Hill, Logan, UT, 84322-0300, USA
| | - Maria G Chernysheva
- Department of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russian Federation.
| | - Paulina Kalle
- N. S. Kurnakov Institute of General and Inorganic Chemistry of the Russian Academy of Sciences, Moscow, Russian Federation
| | - Elizaveta A Pavlova
- Department of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russian Federation.
| | - Stepan N Kalmykov
- Department of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russian Federation.
| | - Vladimir G Petrov
- Department of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russian Federation.
| | - Nataliya E Borisova
- Department of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russian Federation.
| | - Alexander A Guda
- The Smart Materials Research Institute, Southern Federal University, Rostov-on-Don 3440906, Russian Federation
| | - Petr I Matveev
- Department of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russian Federation.
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Skrabkova HS, Chernysheva MG, Baygildiev TM, Shnitko AV, Kasperovich AV, Egorova TB, Badun GA, Arutyunyan AM, Ksenofontov AL, Rodin IA. Lysozyme binding with amikacin and levofloxacin studied by tritium probe, fluorescence spectroscopy and molecular docking. Arch Biochem Biophys 2024; 751:109848. [PMID: 38065249 DOI: 10.1016/j.abb.2023.109848] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2023] [Revised: 10/28/2023] [Accepted: 12/01/2023] [Indexed: 12/22/2023]
Abstract
Lysozyme complexes with amikacin and levofloxacin were studied by spectroscopy approaches as well as using a tritium probe. Tritium was used as a labeling agent to trace labeled compound concentration in a system of two immiscible liquids and in the atomic form to determine the possible position of the binding site. Co-adsorption of protein and drug at the liquid-liquid interface was analyzed by scintillation phase method that allowed us to directly determine the amount of protein and drug in the mixed adsorption layer. Also, tensiometric measuring of the interfacial tension was used for calculation of binding parameters accordingly to Fainerman model. The treatment of complexes with atomic tritium followed by trypsinolysis and analysis of tritium distribution in the lysozyme peptides reveals the binding sites, binding energies in which were analyzed using molecular docking. Formation of complexes with amikacin and levofloxacin preserves secondar structure of protein. However, the formation of complex with amikacin leads to the almost total loss of the enzymatic activity of lysozyme and the redshift of the maximum on the lysozyme fluorescence band. A slight decrease in the distribution coefficient of lysozyme in the presence of amikacin assumes that the complex has higher hydrophilicity in comparison to lysozyme without additives. The most favorable for binding were the positions of the active centers that included amino acids Asp52 and Glu35, as well as in the vicinity of peptide His15-Arg21, with the participation of amino acids Tyr20, Arg14. In the case of levofloxacin, the formation of lysozyme-ligand complex in aqueous solution is possible without changing the microenvironment of the active center of the protein. Binding of levofloxacin to the active center of the enzyme was the most favorable, but Asp52 and Glu35 that are responsible for the enzymatic activity of lysozyme, were not affected.
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Affiliation(s)
- Hanna S Skrabkova
- Department of Chemistry, Lomonosov Moscow State University, 119991, Moscow, Russia
| | - Maria G Chernysheva
- Department of Chemistry, Lomonosov Moscow State University, 119991, Moscow, Russia.
| | - Timur M Baygildiev
- Department of Chemistry, Lomonosov Moscow State University, 119991, Moscow, Russia
| | - Alexey V Shnitko
- Department of Chemistry, Lomonosov Moscow State University, 119991, Moscow, Russia
| | | | - Tolganay B Egorova
- Department of Chemistry, Lomonosov Moscow State University, 119991, Moscow, Russia
| | - Gennadii A Badun
- Department of Chemistry, Lomonosov Moscow State University, 119991, Moscow, Russia
| | - Alexander M Arutyunyan
- Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, 119992, Moscow, Russia
| | - Alexander L Ksenofontov
- Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, 119992, Moscow, Russia
| | - Igor A Rodin
- Department of Chemistry, Lomonosov Moscow State University, 119991, Moscow, Russia
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Khalil A, Kashif M. Interaction studies of levofloxacin with human lysozyme in a ternary complex using multispectroscopic and computational analysis: A circular dichroism method for the quantitation of levofloxacin. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.121023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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Konopkina EA, Matveev PI, Huang PW, Kirsanova AA, Chernysheva MG, Sumyanova TB, Domnikov KS, Shi WQ, Kalmykov SN, Petrov VG, Borisova NE. Pyridine-di-phosphonates as chelators for trivalent f-elements: kinetics, thermodynamic and interfacial study of Am(III)/Eu(III) solvent extraction. Dalton Trans 2022; 51:11180-11192. [PMID: 35801576 DOI: 10.1039/d2dt01007k] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The fractionation of high-level radioactive waste from nuclear power plants simplifies the handling of its components, and facilitates the reduction of radiotoxic effects on the environment. The search and study of new ligands for solvent extraction, as one of the methods in fractionation, remains a complex and important research task. In this work, four pyridine diphosphonate ligands were synthesized. These ligands are part of the class of the N,O-donor extractants, which are selective towards Am(III). The separation factor SF(Am/Eu) for the best extractant reached values up to 10. The influence of the substituents on the efficiency of extraction and complexation of trivalent f-elements, the kinetics of extraction, and the behavior of the ligand at the interface were described. The effect of nitric acid concentration on the extraction was shown. The stoichiometry of the complexes was determined by slope analysis in solvent extraction experiment and verified by spectrophotometric titration in acetonitrile. Liquid tension experiments with a pendant drop method revealed the interfacial properties of the ligands in "F-3 solvent/H2O" and "F-3 solvent/HNO3" systems. The relationship between the surface activity and the ligand structure was shown. Studies of the extraction kinetics were performed in a modified Lewis cell. The effect of the ligand structure on the extraction rate was shown. The DFT calculation with the B3LYP density functional was used to explain the extraction properties of the ligands, including selectivity. The calculation of the pre-organization energy of the ligands explained the kinetics and extraction patterns for the studied series.
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Affiliation(s)
- Ekaterina A Konopkina
- Department of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russian Federation.
| | - Petr I Matveev
- Department of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russian Federation.
| | - Pin-Wen Huang
- Zhejiang University of Water Resources and Electric Power, Hangzhou, 310018, China
| | - Anna A Kirsanova
- Department of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russian Federation.
| | - Maria G Chernysheva
- Department of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russian Federation.
| | - Tsagana B Sumyanova
- Department of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russian Federation.
| | - Kirill S Domnikov
- Department of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russian Federation.
| | - Wei-Qun Shi
- Laboratory of Nuclear Energy Chemistry, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing 100049, China
| | - Stepan N Kalmykov
- Department of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russian Federation.
| | - Vladimir G Petrov
- Department of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russian Federation.
| | - Nataliya E Borisova
- Department of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russian Federation.
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Thi-Yen Le T, Hussain S, Tsay RY, Noskov BA, Akentiev A, Lin SY. On the equilibrium surface tension of aqueous protein solutions – Bovine serum albumin. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2021.118305] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Chernysheva MG, Shnitko AV, Skrabkova HS, Badun GA. Peculiarities of alkylamidopropyldimethylbenzylammonium (Miramistin) in the relationship to lysozyme in comparison with quaternary ammonium surfactants: Coadsorption at the interfaces, enzymatic activity and molecular docking. Colloids Surf A Physicochem Eng Asp 2021. [DOI: 10.1016/j.colsurfa.2021.127503] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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