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For: Hollup SM, Sadowski MI, Jonassen I, Taylor WR. Exploring the limits of fold discrimination by structural alignment: a large scale benchmark using decoys of known fold. Comput Biol Chem 2011;35:174-88. [PMID: 21704264 PMCID: PMC3145973 DOI: 10.1016/j.compbiolchem.2011.04.008] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2011] [Accepted: 04/23/2011] [Indexed: 11/10/2022]
Number Cited by Other Article(s)
1
Exploring Protein Fold Space. Biomolecules 2020;10:biom10020193. [PMID: 32012781 PMCID: PMC7072414 DOI: 10.3390/biom10020193] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2019] [Revised: 01/22/2020] [Accepted: 01/24/2020] [Indexed: 11/17/2022]  Open
2
Holm L. DALI and the persistence of protein shape. Protein Sci 2020;29:128-140. [PMID: 31606894 PMCID: PMC6933842 DOI: 10.1002/pro.3749] [Citation(s) in RCA: 452] [Impact Index Per Article: 113.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2019] [Revised: 10/08/2019] [Accepted: 10/09/2019] [Indexed: 12/30/2022]
3
Taylor WR, Matthews-Palmer TRS, Beeby M. Molecular Models for the Core Components of the Flagellar Type-III Secretion Complex. PLoS One 2016;11:e0164047. [PMID: 27855178 PMCID: PMC5113899 DOI: 10.1371/journal.pone.0164047] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2016] [Accepted: 09/19/2016] [Indexed: 01/10/2023]  Open
4
Senn S, Nanda V, Falkowski P, Bromberg Y. Function-based assessment of structural similarity measurements using metal co-factor orientation. Proteins 2013;82:648-56. [PMID: 24127252 DOI: 10.1002/prot.24442] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2013] [Revised: 09/17/2013] [Accepted: 09/26/2013] [Indexed: 12/20/2022]
5
Sadowski MI, Taylor WR. Evolutionary inaccuracy of pairwise structural alignments. ACTA ACUST UNITED AC 2012;28:1209-15. [PMID: 22399676 PMCID: PMC3338010 DOI: 10.1093/bioinformatics/bts103] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]
6
Taylor WR, Sadowski MI. Structural constraints on the covariance matrix derived from multiple aligned protein sequences. PLoS One 2011;6:e28265. [PMID: 22194819 PMCID: PMC3237328 DOI: 10.1371/journal.pone.0028265] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2011] [Accepted: 11/04/2011] [Indexed: 11/18/2022]  Open
7
Sadowski MI, Maksimiak K, Taylor WR. Direct correlation analysis improves fold recognition. Comput Biol Chem 2011;35:323-32. [PMID: 22000804 PMCID: PMC3267019 DOI: 10.1016/j.compbiolchem.2011.08.002] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2011] [Revised: 08/11/2011] [Accepted: 08/11/2011] [Indexed: 11/23/2022]
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