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Senturk ZK. Layer recurrent neural network-based diagnosis of Parkinson’s disease using voice features. BIOMED ENG-BIOMED TE 2022; 67:249-266. [DOI: 10.1515/bmt-2022-0022] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2022] [Accepted: 05/18/2022] [Indexed: 12/13/2022]
Abstract
Abstract
Parkinson’s disease (PD), a slow-progressing neurological disease, affects a large percentage of the world’s elderly population, and this population is expected to grow over the next decade. As a result, early detection is crucial for community health and the future of the globe in order to take proper safeguards and have a less arduous treatment procedure. Recent research has begun to focus on the motor system deficits caused by PD. Because practically most of the PD patients suffer from voice abnormalities, researchers working on automated diagnostic systems investigate vocal impairments. In this paper, we undertake extensive experiments with features extracted from voice signals. We propose a layer Recurrent Neural Network (RNN) based diagnosis for PD. To prove the efficiency of the model, different network models are compared. To the best of our knowledge, several neural network topologies, namely RNN, Cascade Forward Neural Networks (CFNN), and Feed Forward Neural Networks (FFNN), are used and compared for voice-based PD detection for the first time. In addition, the impacts of data normalization and feature selection (FS) are thoroughly examined. The findings reveal that normalization increases classifier performance and Laplacian-based FS outperforms. The proposed RNN model with 300 voice features achieves 99.74% accuracy.
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Affiliation(s)
- Zehra Karapinar Senturk
- Computer Engineering Department , Faculty of Engineering, Duzce University , 81620 , Duzce , Turkey
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Diao T, Kushzad F, Patel MD, Bindiganavale MP, Wasi M, Kochenderfer MJ, Moss HE. Comparison of Machine Learning Approaches to Improve Diagnosis of Optic Neuropathy Using Photopic Negative Response Measured Using a Handheld Device. Front Med (Lausanne) 2021; 8:771713. [PMID: 34926514 PMCID: PMC8677942 DOI: 10.3389/fmed.2021.771713] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2021] [Accepted: 11/05/2021] [Indexed: 11/20/2022] Open
Abstract
The photopic negative response of the full-field electroretinogram (ERG) is reduced in optic neuropathies. However, technical requirements for measurement and poor classification performance have limited widespread clinical application. Recent advances in hardware facilitate efficient clinic-based recording of the full-field ERG. Time series classification, a machine learning approach, may improve classification by using the entire ERG waveform as the input. In this study, full-field ERGs were recorded in 217 eyes (109 optic neuropathy and 108 controls) of 155 subjects. User-defined ERG features including photopic negative response were reduced in optic neuropathy eyes (p < 0.0005, generalized estimating equation models accounting for age). However, classification of optic neuropathy based on user-defined features was only fair with receiver operating characteristic area under the curve ranging between 0.62 and 0.68 and F1 score at the optimal cutoff ranging between 0.30 and 0.33. In comparison, machine learning classifiers using a variety of time series analysis approaches had F1 scores of 0.58–0.76 on a test data set. Time series classifications are promising for improving optic neuropathy diagnosis using ERG waveforms. Larger sample sizes will be important to refine the models.
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Affiliation(s)
- Tina Diao
- Department of Management Science & Engineering, Stanford University, Stanford, CA, United States
| | - Fareshta Kushzad
- Department of Ophthalmology, Stanford University, Palo Alto, CA, United States
| | - Megh D Patel
- Department of Ophthalmology, Stanford University, Palo Alto, CA, United States
| | | | - Munam Wasi
- Department of Ophthalmology, Stanford University, Palo Alto, CA, United States
| | - Mykel J Kochenderfer
- Department of Ophthalmology, Stanford University, Palo Alto, CA, United States.,Department of Aeronautics and Astronautics, Stanford University, Stanford, CA, United States
| | - Heather E Moss
- Department of Ophthalmology, Stanford University, Palo Alto, CA, United States.,Department of Neurology and Neurological Sciences, Stanford University, Palo Alto, CA, United States
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Artificial intelligence in disease diagnostics: A critical review and classification on the current state of research guiding future direction. HEALTH AND TECHNOLOGY 2021. [DOI: 10.1007/s12553-021-00555-5] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
AbstractThe diagnosis of diseases is decisive for planning proper treatment and ensuring the well-being of patients. Human error hinders accurate diagnostics, as interpreting medical information is a complex and cognitively challenging task. The application of artificial intelligence (AI) can improve the level of diagnostic accuracy and efficiency. While the current literature has examined various approaches to diagnosing various diseases, an overview of fields in which AI has been applied, including their performance aiming to identify emergent digitalized healthcare services, has not yet been adequately realized in extant research. By conducting a critical review, we portray the AI landscape in diagnostics and provide a snapshot to guide future research. This paper extends academia by proposing a research agenda. Practitioners understand the extent to which AI improves diagnostics and how healthcare benefits from it. However, several issues need to be addressed before successful application of AI in disease diagnostics can be achieved.
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Wu H, Zhang X, Geng X, Dong J, Zhou G. Computer aided quantification for retinal lesions in patients with moderate and severe non-proliferative diabetic retinopathy: a retrospective cohort study. BMC Ophthalmol 2014; 14:126. [PMID: 25359611 PMCID: PMC4232650 DOI: 10.1186/1471-2415-14-126] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2013] [Accepted: 10/20/2014] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Detection of retinal lesions like micro-aneurysms and exudates are important for the clinical diagnosis of diabetes retinopathy. The traditional subjective judgments by clinicians are dependent on their experience and can be subject to lack of consistency and therefore a quantification method is worthwhile. METHODS In this study, 10 moderate non-proliferative diabetes retinopathy (NPDR) patients and 10 severe NPDR ones were retrospectively selected as a cohort. Mathematical morphological methods were used for automatic segmentation of lesions. For exudates detection, images were pre-processed with adaptive histogram equalization to enhance contrast, then binary images for area calculation were obtained by threshold classification. For micro-aneurysms detection, the images were pre-processed by top-hat and bottom-hat transformation, then Otsu method and Hough transform were used to classify micro-aneurysms. Post-processing morphological methods were used to preclude the false positive noise. RESULTS After segmentation, the area of exuduates divided by optic disk area (exudates/disk ratio) and counts of microaneurysms were quantified and compared between the moderate and severe non-proliferative diabetic retinopathy groups, which had significant difference(P < 0.05). CONCLUSIONS In conclusion, morphological features of lesion might be an image marker for NPDR grading and computer aided quantification of retinal lesion could be a practical way for clinicians to better investigates diabetic retinopathy.
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Affiliation(s)
| | | | | | - Jiancheng Dong
- Department of Medical Informatics, Medical School of Nantong University, Nantong 226001, China.
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Fathi A, Naghsh-Nilchi AR, Mohammadi FA. Automatic vessel network features quantification using local vessel pattern operator. Comput Biol Med 2013; 43:587-93. [DOI: 10.1016/j.compbiomed.2013.01.011] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2012] [Revised: 10/07/2012] [Accepted: 01/19/2013] [Indexed: 10/27/2022]
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6
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QSRR-based estimation of the retention time of opiate and sedative drugs by comprehensive two-dimensional gas chromatography. Med Chem Res 2011. [DOI: 10.1007/s00044-011-9727-9] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Lin RH, Chuang CL. A hybrid diagnosis model for determining the types of the liver disease. Comput Biol Med 2010; 40:665-70. [PMID: 20591425 DOI: 10.1016/j.compbiomed.2010.06.002] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2008] [Revised: 06/04/2010] [Accepted: 06/04/2010] [Indexed: 11/16/2022]
Abstract
The symptoms of liver diseases are not apparent in the initial stage, and the condition is usually quite serious when the symptoms are obvious enough. Most studies on liver disease diagnosis focus mainly on identifying the presence of liver disease in a patient. Not many diagnosis models have been developed to move beyond the detection of liver disease. The study accordingly aims to construct an intelligent liver diagnosis model which integrates artificial neural networks, analytic hierarchy process, and case-based reasoning methods to examine if patients suffer from liver disease and to determine the types of the liver disease.
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Affiliation(s)
- Rong-Ho Lin
- Department of Industrial Engineering and Management, National Taipei University of Technology, No. 1, Section 3, Chung-Hsiao East Road, Taipei 10608, Taiwan, ROC.
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Polat K, Kara S, Güven A, Güneş S. Utilization of Discretization method on the diagnosis of optic nerve disease. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2008; 91:255-264. [PMID: 18571280 DOI: 10.1016/j.cmpb.2008.04.009] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2007] [Revised: 03/25/2008] [Accepted: 04/22/2008] [Indexed: 05/26/2023]
Abstract
The optic nerve disease is an important disease that appears commonly in public. In this paper, we propose a hybrid diagnostic system based on discretization (quantization) method and classification algorithms including C4.5 decision tree classifier, artificial neural network (ANN), and least square support vector machine (LSSVM) to diagnose the optic nerve disease from Visual Evoked Potential (VEP) signals with discrete values. The aim of this paper is to investigate the effect of Discretization method on the classification of optic nerve disease. Since the VEP signals are non-linearly-separable, low classification accuracy can be obtained by classifier algorithms. In order to overcome this problem, we have used the Discretization method as data pre-processing. The proposed method consists of two phases: (i) quantization of VEP signals using Discretization method, and (ii) diagnosis of discretized VEP signals using classification algorithms including C4.5 decision tree classifier, ANN, and LSSVM. The classification accuracies obtained by these hybrid methods (combination of C4.5 decision tree classifier-quantization method, combination of ANN-quantization method, and combination of LSSVM-quantization method) with and without quantization strategy are 84.6-96.92%, 94.20-96.76%, and 73.44-100%, respectively. As can be seen from these results, the best model used to classify the optic nerve disease from VEP signals is obtained for the combination of LSSVM classifier and quantization strategy. The obtained results denote that the proposed method can make an effective interpretation and point out the ability of design of a new intelligent assistance diagnosis system.
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Affiliation(s)
- Kemal Polat
- Selcuk University, Department of Electrical & Electronics Engineering, 42075 Konya, Turkey.
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9
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Lavergne J, Gasson N. [Class II malocclusions studied by neural networks]. Orthod Fr 2008; 79:91-7. [PMID: 18505671 DOI: 10.1051/orthodfr:2008004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Abstract
The aim of this paper is to study how a population is turning when the facial growth regulation is optimal. For this purpose we are using an artificial neural network. Two samples are used: one comprising 100 individuals with ideal occlusion, and another one comprising 500 patients with basal Class II. The first one is used, during the training phase, to teach the network the rules of an optimal facial growth regulation. This network is then applied to the second sample to study how this sample is turning when the facial growth is perfectly regulated. Two samples are obtained after calculation, one measured and one virtual. Both have the same growth potential, the difference lies in how this potential is used. In the virtual sample, some groups of patients disappear and large differences appear between these two samples. But still, one third of the patients in the virtual sample remain their basal Class II.
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Akdemir B, Kara S, Polat K, Güven A, Güneş S. Ensemble adaptive network-based fuzzy inference system with weighted arithmetical mean and application to diagnosis of optic nerve disease from visual-evoked potential signals. Artif Intell Med 2008; 43:141-9. [PMID: 18468871 DOI: 10.1016/j.artmed.2008.03.007] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2007] [Revised: 02/26/2008] [Accepted: 03/19/2008] [Indexed: 11/18/2022]
Abstract
OBJECTIVE This paper presents a new method based on combining principal component analysis (PCA) and adaptive network-based fuzzy inference system (ANFIS) to diagnose the optic nerve disease from visual-evoked potential (VEP) signals. The aim of this study is to improve the classification accuracy of ANFIS classifier on diagnosis of optic nerve disease from VEP signals. With this aim, a new classifier ensemble based on ANFIS and PCA is proposed. METHODS AND MATERIAL The VEP signals dataset include 61 healthy subjects and 68 patients suffered from optic nerve disease. First of all, the dimension of VEP signals dataset with 63 features has been reduced to 4 features using PCA. After applying PCA, ANFIS trained using three different training-testing datasets randomly with 50-50% training-testing partition. RESULTS The obtained classification results from ANFIS trained separately with three different training-testing datasets are 96.87%, 98.43%, and 98.43%, respectively. And then the results of ANFIS trained with three different training-testing datasets randomly with 50-50% training-testing partition have been combined with three different ways including weighted arithmetical mean that proposed firstly by us, arithmetical mean, and geometrical mean. The classification results of ANFIS combined with three different ways are 98.43%, 100%, and 100%, respectively. Also, ensemble ANFIS has been compared with ANN ensemble. ANN ensemble obtained 98.43%, 100%, and 100% prediction accuracy with three different ways including arithmetical mean, geometrical mean and weighted arithmetical mean. CONCLUSION These results have shown that the proposed classifier ensemble approach based on ANFIS trained with different train-test datasets and PCA has produced very promising results in the diagnosis of optic nerve disease from VEP signals.
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Affiliation(s)
- Bayram Akdemir
- Selcuk University, Department of Electrical & Electronics Engineering, 42075 Konya, Turkey.
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Güven A, Polat K, Kara S, Güneş S. The effect of generalized discriminate analysis (GDA) to the classification of optic nerve disease from VEP signals. Comput Biol Med 2008; 38:62-8. [PMID: 17709102 DOI: 10.1016/j.compbiomed.2007.07.002] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2006] [Revised: 07/04/2007] [Accepted: 07/04/2007] [Indexed: 11/30/2022]
Abstract
In this paper, we have investigated the effect of generalized discriminate analysis (GDA) on classification performance of optic nerve disease from visual evoke potentials (VEP) signals. The GDA method has been used as a pre-processing step prior to the classification process of optic nerve disease. The proposed method consists of two parts. First, GDA has been used as pre-processing to increase the distinguishing of optic nerve disease from VEP signals. Second, we have used the C4.5 decision tree classifier, Levenberg Marquart (LM) back propagation algorithm, artificial immune recognition system (AIRS), linear discriminant analysis (LDA), and support vector machine (SVM) classifiers. Without GDA, we have obtained 84.37%, 93.75%, 75%, 76.56%, and 53.125% classification accuracies using C4.5 decision tree classifier, LM back propagation algorithm, AIRS, LDA, and SVM algorithms, respectively. With GDA, 93.75%, 93.86%, 81.25%, 93.75%, and 93.75% classification accuracies have been obtained using the above algorithms, respectively. These results show that the GDA pre-processing method has produced very promising results in diagnosis of optic nerve disease from VEP signals.
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Affiliation(s)
- Ayşegül Güven
- Department of Electronics, Civil Aviation College, Erciyes University, 38039 Kayseri, Turkey.
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Kara S, Güven A. Neural network-based diagnosing for optic nerve disease from visual-evoked potential. J Med Syst 2007; 31:391-6. [PMID: 17918693 DOI: 10.1007/s10916-007-9081-0] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
In this paper, we purpose a diagnostic procedure to identify the optic nerve disease from visual evoked potential (VEP) signals using an Artificial Neural Network (ANN). Multilayer feed forward ANN trained with a Levenberg Marquart backpropagation algorithm was implemented. The correct classification rate was 96.87% for subjects having optic nerve disease and 96.66% for healthy subjects. The end results are classified as healthy and diseased. Testing results were found to be compliant with the expected results that are derived from the physician's direct diagnosis, angiography, VEP and pattern electroretinography. The stated results show that the proposed method could point out the ability of design of a new intelligent assistance diagnosis system.
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Affiliation(s)
- Sadik Kara
- Department of Electrical and Electronics Eng., Erciyes University, 38039 Kayseri, Turkey.
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Kara S, Güven A, Içer S. Classification of macular and optic nerve disease by principal component analysis. Comput Biol Med 2006; 37:836-41. [PMID: 17046736 DOI: 10.1016/j.compbiomed.2006.08.024] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2006] [Revised: 08/20/2006] [Accepted: 08/30/2006] [Indexed: 11/29/2022]
Abstract
In this study, pattern electroretinography (PERG) signals were obtained by electrophysiological testing devices from 70 subjects. The group consisted of optic nerve and macular diseases subjects. Characterization and interpretation of the physiological PERG signal was done by principal component analysis (PCA). While the first principal component of data matrix acquired from optic nerve patients represents 67.24% of total variance, the first principal component of the macular patients data matrix represents 76.81% of total variance. The basic differences between the two patient groups were obtained with first principal component, obviously. In addition, the graphic of second principal component vs. first principal component of optic nerve and macular subjects was analyzed. The two patient groups were separated clearly from each other without any hesitation. This research developed an auxiliary system for the interpretation of the PERG signals. The stated results show that the use of PCA of physiological waveforms is presented as a powerful method likely to be incorporated in future medical signal processing.
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Affiliation(s)
- Sadik Kara
- Department of Electronics Engineering, Erciyes University, 38039 Kayseri, Turkey.
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