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Wang Q, Zheng Y, Yang G, Jin W, Chen X, Yin Y. Multiscale Rotation-Invariant Convolutional Neural Networks for Lung Texture Classification. IEEE J Biomed Health Inform 2017; 22:184-195. [PMID: 28333649 DOI: 10.1109/jbhi.2017.2685586] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
We propose a new multiscale rotation-invariant convolutional neural network (MRCNN) model for classifying various lung tissue types on high-resolution computed tomography. MRCNN employs Gabor-local binary pattern that introduces a good property in image analysis-invariance to image scales and rotations. In addition, we offer an approach to deal with the problems caused by imbalanced number of samples between different classes in most of the existing works, accomplished by changing the overlapping size between the adjacent patches. Experimental results on a public interstitial lung disease database show a superior performance of the proposed method to state of the art.
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Lei B, Yao Y, Chen S, Li S, Li W, Ni D, Wang T. Discriminative Learning for Automatic Staging of Placental Maturity via Multi-layer Fisher Vector. Sci Rep 2015; 5:12818. [PMID: 26228175 PMCID: PMC4533167 DOI: 10.1038/srep12818] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2015] [Accepted: 07/10/2015] [Indexed: 12/18/2022] Open
Abstract
Currently, placental maturity is performed using subjective evaluation, which can be unreliable as it is highly dependent on the observations and experiences of clinicians. To address this problem, this paper proposes a method to automatically stage placenta maturity from B-mode ultrasound (US) images based on dense sampling and novel feature descriptors. Specifically, our proposed method first densely extracts features with a regular grid based on dense sampling instead of a few unreliable interest points. Followed by, these features are clustered using generative Gaussian mixture model (GMM) to obtain high order statistics of the features. The clustering representatives (i.e., cluster means) are encoded by Fisher vector (FV) for staging accuracy enhancement. Differing from the previous studies, a multi-layer FV is investigated to exploit the spatial information rather than the single layer FV. Experimental results show that the proposed method with the dense FV has achieved an area under the receiver of characteristics (AUC) of 96.77%, sensitivity and specificity of 98.04% and 93.75% for the placental maturity staging, respectively. Our experimental results also demonstrate that the dense feature outperforms the traditional sparse feature for placental maturity staging.
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Affiliation(s)
- Baiying Lei
- Department of Biomedical Engineering, School of Medicine, Shenzhen University, National-Regional Key Technology Engineering Laboratory for Medical Ultrasound, Guangdong Key Laboratory for Biomedical Measurements and Ultrasound Imaging, Nanhai Ave 3688, Shenzhen, Guangdong, 518060, P.R.China
| | - Yuan Yao
- Department of Ultrasound, Affiliated Shenzhen Maternal and Child Healthcare, Hospital of Nanfang Medical University, Shenzhen, China
| | - Siping Chen
- Department of Biomedical Engineering, School of Medicine, Shenzhen University, National-Regional Key Technology Engineering Laboratory for Medical Ultrasound, Guangdong Key Laboratory for Biomedical Measurements and Ultrasound Imaging, Nanhai Ave 3688, Shenzhen, Guangdong, 518060, P.R.China
| | - Shengli Li
- Department of Ultrasound, Affiliated Shenzhen Maternal and Child Healthcare, Hospital of Nanfang Medical University, Shenzhen, China
| | - Wanjun Li
- Department of Biomedical Engineering, School of Medicine, Shenzhen University, National-Regional Key Technology Engineering Laboratory for Medical Ultrasound, Guangdong Key Laboratory for Biomedical Measurements and Ultrasound Imaging, Nanhai Ave 3688, Shenzhen, Guangdong, 518060, P.R.China
| | - Dong Ni
- Department of Biomedical Engineering, School of Medicine, Shenzhen University, National-Regional Key Technology Engineering Laboratory for Medical Ultrasound, Guangdong Key Laboratory for Biomedical Measurements and Ultrasound Imaging, Nanhai Ave 3688, Shenzhen, Guangdong, 518060, P.R.China
| | - Tianfu Wang
- Department of Biomedical Engineering, School of Medicine, Shenzhen University, National-Regional Key Technology Engineering Laboratory for Medical Ultrasound, Guangdong Key Laboratory for Biomedical Measurements and Ultrasound Imaging, Nanhai Ave 3688, Shenzhen, Guangdong, 518060, P.R.China
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Shen H, Tao D, Ma D. Multiview locally linear embedding for effective medical image retrieval. PLoS One 2013; 8:e82409. [PMID: 24349277 PMCID: PMC3862625 DOI: 10.1371/journal.pone.0082409] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2013] [Accepted: 10/23/2013] [Indexed: 11/18/2022] Open
Abstract
Content-based medical image retrieval continues to gain attention for its potential to assist radiological image interpretation and decision making. Many approaches have been proposed to improve the performance of medical image retrieval system, among which visual features such as SIFT, LBP, and intensity histogram play a critical role. Typically, these features are concatenated into a long vector to represent medical images, and thus traditional dimension reduction techniques such as locally linear embedding (LLE), principal component analysis (PCA), or laplacian eigenmaps (LE) can be employed to reduce the “curse of dimensionality”. Though these approaches show promising performance for medical image retrieval, the feature-concatenating method ignores the fact that different features have distinct physical meanings. In this paper, we propose a new method called multiview locally linear embedding (MLLE) for medical image retrieval. Following the patch alignment framework, MLLE preserves the geometric structure of the local patch in each feature space according to the LLE criterion. To explore complementary properties among a range of features, MLLE assigns different weights to local patches from different feature spaces. Finally, MLLE employs global coordinate alignment and alternating optimization techniques to learn a smooth low-dimensional embedding from different features. To justify the effectiveness of MLLE for medical image retrieval, we compare it with conventional spectral embedding methods. We conduct experiments on a subset of the IRMA medical image data set. Evaluation results show that MLLE outperforms state-of-the-art dimension reduction methods.
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Affiliation(s)
- Hualei Shen
- State Key Laboratory of Software Development Environment, School of Computer Science and Engineering, Beihang University, Beijing, China
| | - Dacheng Tao
- Center for Quantum Computation and Intelligent Systems, Faculty of Engineering and Information Technology, University of Technology, Sydney, New South Wales, Australia
- * E-mail: (DCT); (DFM)
| | - Dianfu Ma
- State Key Laboratory of Software Development Environment, School of Computer Science and Engineering, Beihang University, Beijing, China
- * E-mail: (DCT); (DFM)
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