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Zhou W, Wang X, Yang X, Hu Y, Yi Y. Skeleton-guided multi-scale dual-coordinate attention aggregation network for retinal blood vessel segmentation. Comput Biol Med 2024; 181:109027. [PMID: 39178808 DOI: 10.1016/j.compbiomed.2024.109027] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2024] [Revised: 06/06/2024] [Accepted: 08/12/2024] [Indexed: 08/26/2024]
Abstract
Deep learning plays a pivotal role in retinal blood vessel segmentation for medical diagnosis. Despite their significant efficacy, these techniques face two major challenges. Firstly, they often neglect the severe class imbalance in fundus images, where thin vessels in the foreground are proportionally minimal. Secondly, they are susceptible to poor image quality and blurred vessel edges, resulting in discontinuities or breaks in vascular structures. In response, this paper proposes the Skeleton-guided Multi-scale Dual-coordinate Attention Aggregation (SMDAA) network for retinal vessel segmentation. SMDAA comprises three innovative modules: Dual-coordinate Attention (DCA), Unbalanced Pixel Amplifier (UPA), and Vessel Skeleton Guidance (VSG). DCA, integrating Multi-scale Coordinate Feature Aggregation (MCFA) and Scale Coordinate Attention Decoding (SCAD), meticulously analyzes vessel structures across various scales, adept at capturing intricate details, thereby significantly enhancing segmentation accuracy. To address class imbalance, we introduce UPA, dynamically allocating more attention to misclassified pixels, ensuring precise extraction of thin and small blood vessels. Moreover, to preserve vessel structure continuity, we integrate vessel anatomy and develop the VSG module to connect fragmented vessel segments. Additionally, a Feature-level Contrast (FCL) loss is introduced to capture subtle nuances within the same category, enhancing the fidelity of retinal blood vessel segmentation. Extensive experiments on three public datasets (DRIVE, STARE, and CHASE_DB1) demonstrate superior performance in comparison to current methods. The code is available at https://github.com/wangwxr/SMDAA_NET.
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Affiliation(s)
- Wei Zhou
- College of Computer Science, Shenyang Aerospace University, Shenyang, China
| | - Xiaorui Wang
- College of Computer Science, Shenyang Aerospace University, Shenyang, China
| | - Xuekun Yang
- College of Computer Science, Shenyang Aerospace University, Shenyang, China
| | - Yangtao Hu
- Department of Ophthalmology, The 908th Hospital of Chinese People's Liberation Army Joint Logistic SupportForce, Nanchang, China.
| | - Yugen Yi
- School of Software, Jiangxi Normal University, Nanchang, China.
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2
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Wang Y, Li H. A Novel Single-Sample Retinal Vessel Segmentation Method Based on Grey Relational Analysis. SENSORS (BASEL, SWITZERLAND) 2024; 24:4326. [PMID: 39001106 PMCID: PMC11244310 DOI: 10.3390/s24134326] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/28/2024] [Revised: 06/23/2024] [Accepted: 07/02/2024] [Indexed: 07/16/2024]
Abstract
Accurate segmentation of retinal vessels is of great significance for computer-aided diagnosis and treatment of many diseases. Due to the limited number of retinal vessel samples and the scarcity of labeled samples, and since grey theory excels in handling problems of "few data, poor information", this paper proposes a novel grey relational-based method for retinal vessel segmentation. Firstly, a noise-adaptive discrimination filtering algorithm based on grey relational analysis (NADF-GRA) is designed to enhance the image. Secondly, a threshold segmentation model based on grey relational analysis (TS-GRA) is designed to segment the enhanced vessel image. Finally, a post-processing stage involving hole filling and removal of isolated pixels is applied to obtain the final segmentation output. The performance of the proposed method is evaluated using multiple different measurement metrics on publicly available digital retinal DRIVE, STARE and HRF datasets. Experimental analysis showed that the average accuracy and specificity on the DRIVE dataset were 96.03% and 98.51%. The mean accuracy and specificity on the STARE dataset were 95.46% and 97.85%. Precision, F1-score, and Jaccard index on the HRF dataset all demonstrated high-performance levels. The method proposed in this paper is superior to the current mainstream methods.
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Affiliation(s)
- Yating Wang
- School of Information Science and Technology, Nantong University, Nantong 226019, China
| | - Hongjun Li
- School of Information Science and Technology, Nantong University, Nantong 226019, China
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3
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Atcı ŞY, Güneş A, Zontul M, Arslan Z. Identifying Diabetic Retinopathy in the Human Eye: A Hybrid Approach Based on a Computer-Aided Diagnosis System Combined with Deep Learning. Tomography 2024; 10:215-230. [PMID: 38393285 PMCID: PMC10892594 DOI: 10.3390/tomography10020017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2023] [Revised: 01/16/2024] [Accepted: 02/01/2024] [Indexed: 02/25/2024] Open
Abstract
Diagnosing and screening for diabetic retinopathy is a well-known issue in the biomedical field. A component of computer-aided diagnosis that has advanced significantly over the past few years as a result of the development and effectiveness of deep learning is the use of medical imagery from a patient's eye to identify the damage caused to blood vessels. Issues with unbalanced datasets, incorrect annotations, a lack of sample images, and improper performance evaluation measures have negatively impacted the performance of deep learning models. Using three benchmark datasets of diabetic retinopathy, we conducted a detailed comparison study comparing various state-of-the-art approaches to address the effect caused by class imbalance, with precision scores of 93%, 89%, 81%, 76%, and 96%, respectively, for normal, mild, moderate, severe, and DR phases. The analyses of the hybrid modeling, including CNN analysis and SHAP model derivation results, are compared at the end of the paper, and ideal hybrid modeling strategies for deep learning classification models for automated DR detection are identified.
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Affiliation(s)
- Şükran Yaman Atcı
- Department of Computer Engineering, İstanbul Aydın University, Istanbul 34295, Turkey; (A.G.); (Z.A.)
| | - Ali Güneş
- Department of Computer Engineering, İstanbul Aydın University, Istanbul 34295, Turkey; (A.G.); (Z.A.)
| | - Metin Zontul
- Department of Computer Engineering, Sivas University of Science and Technology, Sivas 58140, Turkey;
| | - Zafer Arslan
- Department of Computer Engineering, İstanbul Aydın University, Istanbul 34295, Turkey; (A.G.); (Z.A.)
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4
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Shen N, Xu T, Huang S, Mu F, Li J. Expert-Guided Knowledge Distillation for Semi-Supervised Vessel Segmentation. IEEE J Biomed Health Inform 2023; 27:5542-5553. [PMID: 37669209 DOI: 10.1109/jbhi.2023.3312338] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/07/2023]
Abstract
In medical image analysis, blood vessel segmentation is of considerable clinical value for diagnosis and surgery. The predicaments of complex vascular structures obstruct the development of the field. Despite many algorithms have emerged to get off the tight corners, they rely excessively on careful annotations for tubular vessel extraction. A practical solution is to excavate the feature information distribution from unlabeled data. This work proposes a novel semi-supervised vessel segmentation framework, named EXP-Net, to navigate through finite annotations. Based on the training mechanism of the Mean Teacher model, we innovatively engage an expert network in EXP-Net to enhance knowledge distillation. The expert network comprises knowledge and connectivity enhancement modules, which are respectively in charge of modeling feature relationships from global and detailed perspectives. In particular, the knowledge enhancement module leverages the vision transformer to highlight the long-range dependencies among multi-level token components; the connectivity enhancement module maximizes the properties of topology and geometry by skeletonizing the vessel in a non-parametric manner. The key components are dedicated to the conditions of weak vessel connectivity and poor pixel contrast. Extensive evaluations show that our EXP-Net achieves state-of-the-art performance on subcutaneous vessel, retinal vessel, and coronary artery segmentations.
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Yuan C, Song S, Yang J, Sun Y, Yang B, Xu L. Pulmonary arteries segmentation from CT images using PA-Net with attention module and contour loss. Med Phys 2023; 50:4887-4898. [PMID: 36752170 DOI: 10.1002/mp.16265] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2022] [Revised: 01/03/2023] [Accepted: 01/18/2023] [Indexed: 02/09/2023] Open
Abstract
BACKGROUND Pulmonary embolism is a kind of cardiovascular disease that threatens human life and health. Since pulmonary embolism exists in the pulmonary artery, improving the segmentation accuracy of pulmonary artery is the key to the diagnosis of pulmonary embolism. Traditional medical image segmentation methods have limited effectiveness in pulmonary artery segmentation. In recent years, deep learning methods have been gradually adopted to solve complex problems in the field of medical image segmentation. PURPOSE Due to the irregular shape of the pulmonary artery and the adjacent-complex tissues, the accuracy of the existing pulmonary artery segmentation methods based on deep learning needs to be improved. Therefore, the purpose of this paper is to develop a segmentation network, which can obtain higher segmentation accuracy and further improve the diagnosis effect. METHODS In this study, the pulmonary artery segmentation performance from the network model and loss function is improved, proposing a pulmonary artery segmentation network (PA-Net) to segment the pulmonary artery region from 2D CT images. Reverse Attention and edge attention are used to enhance the expression ability of the boundary. In addition, to better use feature information, the channel attention module is introduced in the decoder to highlight the important channel features and suppress the unimportant channels. Due to blurred boundaries, pixels near the boundaries of the pulmonary artery may be difficult to segment. Therefore, a new contour loss function based on the active contour model is proposed in this study to segment the target region by assigning dynamic weights to false positive and false negative regions and accurately predict the boundary structure. RESULTS The experimental results show that the segmentation accuracy of this proposed method is significantly improved in comparison with state-of-the-art segmentation methods, and the Dice coefficient is 0.938 ± 0.035, which is also confirmed from the 3D reconstruction results. CONCLUSIONS Our proposed method can accurately segment pulmonary artery structure. This new development will provide the possibility for further rapid diagnosis of pulmonary artery diseases such as pulmonary embolism. Code is available at https://github.com/Yuanyan19/PA-Net.
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Affiliation(s)
- Chengyan Yuan
- School of Science, Northeastern University, Shenyang, China
| | - Shuni Song
- School of Data and Computer Science, Guangdong Peizheng College, Guangzhou, China
| | - Jinzhong Yang
- College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, China
| | - Yu Sun
- College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, China
- Department of Radiology, General Hospital of Northern Theater Command, Shenyang, China
- Key Laboratory of Cardiovascular Imaging and Research of Liaoning Province, Shenyang, China
| | - Benqiang Yang
- Department of Radiology, General Hospital of Northern Theater Command, Shenyang, China
- Key Laboratory of Cardiovascular Imaging and Research of Liaoning Province, Shenyang, China
| | - Lisheng Xu
- College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, China
- Key Laboratory of Medical Image Computing, Ministry of Education, Shenyang, Liaoning, China
- Neusoft Research of Intelligent Healthcare Technology, Co. Ltd., Shenyang, Liaoning, China
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Abdushkour H, Soomro TA, Ali A, Ali Jandan F, Jelinek H, Memon F, Althobiani F, Mohammed Ghonaim S, Irfan M. Enhancing fine retinal vessel segmentation: Morphological reconstruction and double thresholds filtering strategy. PLoS One 2023; 18:e0288792. [PMID: 37467245 DOI: 10.1371/journal.pone.0288792] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2023] [Accepted: 07/05/2023] [Indexed: 07/21/2023] Open
Abstract
Eye diseases such as diabetic retinopathy are progressive with various changes in the retinal vessels, and it is difficult to analyze the disease for future treatment. There are many computerized algorithms implemented for retinal vessel segmentation, but the tiny vessels drop off, impacting the performance of the overall algorithms. This research work contains the new image processing techniques such as enhancement filters, coherence filters and binary thresholding techniques to handle the different color retinal fundus image problems to achieve a vessel image that is well-segmented, and the proposed algorithm has improved performance over existing work. Our developed technique incorporates morphological techniques to address the center light reflex issue. Additionally, to effectively resolve the problem of insufficient and varying contrast, our developed technique employs homomorphic methods and Wiener filtering. Coherent filters are used to address the coherence issue of the retina vessels, and then a double thresholding technique is applied with image reconstruction to achieve a correctly segmented vessel image. The results of our developed technique were evaluated using the STARE and DRIVE datasets and it achieves an accuracy of about 0.96 and a sensitivity of 0.81. The performance obtained from our proposed method proved the capability of the method which can be used by ophthalmology experts to diagnose ocular abnormalities and recommended for further treatment.
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Affiliation(s)
- Hesham Abdushkour
- Nautical Science Deptartment, Faculty of Maritime, King Abdul Aziz University, Jeddah, Saudia Arabia
| | - Toufique A Soomro
- Department of Electronic Engineering, Quaid-e-Awam University of Engineering, Science and Technology Larkana Campus, Sukkur, Pakistan
| | - Ahmed Ali
- Eletrical Engineering Department, Sukkur IBA University, Sukkur, Pakistan
| | - Fayyaz Ali Jandan
- Eletrical Engineering Department, Quaid-e-Awam University of Engineering, Science and Technology Larkana Campus, Sukkur, Pakistan
| | - Herbert Jelinek
- Health Engineering Innovation Center and biotechnology Center, Khalifa University, Abu Dhabi, UAE
| | - Farida Memon
- Department of Electronic Engineering, Mehran University, Janshoro, Jamshoro, Pakistan
| | - Faisal Althobiani
- Marine Engineering Department, Faculty of Maritime, King Abdul Aziz University, Jeddah, Saudia Arabia
| | - Saleh Mohammed Ghonaim
- Marine Engineering Department, Faculty of Maritime, King Abdul Aziz University, Jeddah, Saudia Arabia
| | - Muhammad Irfan
- Electrical Engineering Department, College of Engineering, Najran University, Najran, Saudi Arabia
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Tan Y, Zhao SX, Yang KF, Li YJ. A lightweight network guided with differential matched filtering for retinal vessel segmentation. Comput Biol Med 2023; 160:106924. [PMID: 37146492 DOI: 10.1016/j.compbiomed.2023.106924] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2022] [Revised: 04/03/2023] [Accepted: 04/13/2023] [Indexed: 05/07/2023]
Abstract
The geometric morphology of retinal vessels reflects the state of cardiovascular health, and fundus images are important reference materials for ophthalmologists. Great progress has been made in automated vessel segmentation, but few studies have focused on thin vessel breakage and false-positives in areas with lesions or low contrast. In this work, we propose a new network, differential matched filtering guided attention UNet (DMF-AU), to address these issues, incorporating a differential matched filtering layer, feature anisotropic attention, and a multiscale consistency constrained backbone to perform thin vessel segmentation. The differential matched filtering is used for the early identification of locally linear vessels, and the resulting rough vessel map guides the backbone to learn vascular details. Feature anisotropic attention reinforces the vessel features of spatial linearity at each stage of the model. Multiscale constraints reduce the loss of vessel information while pooling within large receptive fields. In tests on multiple classical datasets, the proposed model performed well compared with other algorithms on several specially designed criteria for vessel segmentation. DMF-AU is a high-performance, lightweight vessel segmentation model. The source code is at https://github.com/tyb311/DMF-AU.
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Affiliation(s)
- Yubo Tan
- The MOE Key Laboratory for Neuroinformation, Radiation Oncology Key Laboratory of Sichuan Province, University of Electronic Science and Technology of China, China.
| | - Shi-Xuan Zhao
- The MOE Key Laboratory for Neuroinformation, Radiation Oncology Key Laboratory of Sichuan Province, University of Electronic Science and Technology of China, China.
| | - Kai-Fu Yang
- The MOE Key Laboratory for Neuroinformation, Radiation Oncology Key Laboratory of Sichuan Province, University of Electronic Science and Technology of China, China.
| | - Yong-Jie Li
- The MOE Key Laboratory for Neuroinformation, Radiation Oncology Key Laboratory of Sichuan Province, University of Electronic Science and Technology of China, China.
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8
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Kv R, Prasad K, Peralam Yegneswaran P. Segmentation and Classification Approaches of Clinically Relevant Curvilinear Structures: A Review. J Med Syst 2023; 47:40. [PMID: 36971852 PMCID: PMC10042761 DOI: 10.1007/s10916-023-01927-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2022] [Accepted: 02/25/2023] [Indexed: 03/29/2023]
Abstract
Detection of curvilinear structures from microscopic images, which help the clinicians to make an unambiguous diagnosis is assuming paramount importance in recent clinical practice. Appearance and size of dermatophytic hyphae, keratitic fungi, corneal and retinal vessels vary widely making their automated detection cumbersome. Automated deep learning methods, endowed with superior self-learning capacity, have superseded the traditional machine learning methods, especially in complex images with challenging background. Automatic feature learning ability using large input data with better generalization and recognition capability, but devoid of human interference and excessive pre-processing, is highly beneficial in the above context. Varied attempts have been made by researchers to overcome challenges such as thin vessels, bifurcations and obstructive lesions in retinal vessel detection as revealed through several publications reviewed here. Revelations of diabetic neuropathic complications such as tortuosity, changes in the density and angles of the corneal fibers have been successfully sorted in many publications reviewed here. Since artifacts complicate the images and affect the quality of analysis, methods addressing these challenges have been described. Traditional and deep learning methods, that have been adapted and published between 2015 and 2021 covering retinal vessels, corneal nerves and filamentous fungi have been summarized in this review. We find several novel and meritorious ideas and techniques being put to use in the case of retinal vessel segmentation and classification, which by way of cross-domain adaptation can be utilized in the case of corneal and filamentous fungi also, making suitable adaptations to the challenges to be addressed.
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Affiliation(s)
- Rajitha Kv
- Department of Biomedical Engineering, Manipal Institute of Technology, Manipal Academy of Higher Education, Manipal, 576104, Karnataka, India
| | - Keerthana Prasad
- Manipal School of Information Sciences, Manipal Academy of Higher Education, Manipal, 576104, Karnataka, India.
| | - Prakash Peralam Yegneswaran
- Department of Microbiology, Kasturba Medical College, Manipal Academy of Higher Education, Manipal, 576104, Karnataka, India
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9
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Kumar KS, Singh NP. An efficient registration-based approach for retinal blood vessel segmentation using generalized Pareto and fatigue pdf. Med Eng Phys 2022; 110:103936. [PMID: 36529622 DOI: 10.1016/j.medengphy.2022.103936] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2022] [Revised: 11/05/2022] [Accepted: 12/01/2022] [Indexed: 12/12/2022]
Abstract
Segmentation of Retinal Blood Vessel (RBV) extraction in the retina images and Registration of segmented RBV structure is implemented to identify changes in vessel structure by ophthalmologists in diagnosis of various illnesses like Glaucoma, Diabetes, and Hypertension's. The Retinal Blood Vessel provides blood to the inner retinal neurons, RBV are located mainly in internal retina but it may partly in the ganglion cell layer, following network failure haven't been identified with past methods. Classifications of accurate RBV and Registration of segmented blood vessels are challenging tasks in the low intensity background of Retinal Image. So, we projected a novel approach of segmentation of RBV extraction used matched filter of Generalized Pareto Probability Distribution Function (pdf) and Registration approach on feature-based segmented retinal blood vessel of Binary Robust Invariant Scalable Key point (BRISK). The BRISK provides the predefined sampling pattern as compared to Pdf. The BRISK feature is implemented for attention point recognition & matching approach for change in vessel structure. The proposed approaches contain 3 levels: pre-processing, matched filter-based Generalized Pareto pdf as a source along with the novel approach of fatigue pdf as a target, and BRISK framework is used for Registration on segmented retinal images of supply & intention images. This implemented system's performance is estimated in experimental analysis by the Average accuracy, Normalized Cross-Correlation (NCC), and computation time process of the segmented retinal source and target image. The NCC is main element to give more statistical information about retinal image segmentation. The proposed approach of Generalized Pareto value pdf has Average Accuracy of 95.21%, NCC of both image pairs is 93%, and Average accuracy of Registration of segmented source images and the target image is 98.51% respectively. The proposed approach of average computational time taken is around 1.4 s, which has been identified on boundary condition of Pdf function.
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Affiliation(s)
- K Susheel Kumar
- GITAM University, Bengaluru, 561203, India; National Institute of Technology Hamirpur, Himachal Pradesh 177005, India.
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10
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Mahapatra S, Agrawal S, Mishro PK, Pachori RB. A novel framework for retinal vessel segmentation using optimal improved frangi filter and adaptive weighted spatial FCM. Comput Biol Med 2022; 147:105770. [DOI: 10.1016/j.compbiomed.2022.105770] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2022] [Revised: 06/08/2022] [Accepted: 06/19/2022] [Indexed: 11/28/2022]
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Yue C, Ye M, Wang P, Huang D, Lu X. SRV-GAN: A generative adversarial network for segmenting retinal vessels. MATHEMATICAL BIOSCIENCES AND ENGINEERING : MBE 2022; 19:9948-9965. [PMID: 36031977 DOI: 10.3934/mbe.2022464] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
In the field of ophthalmology, retinal diseases are often accompanied by complications, and effective segmentation of retinal blood vessels is an important condition for judging retinal diseases. Therefore, this paper proposes a segmentation model for retinal blood vessel segmentation. Generative adversarial networks (GANs) have been used for image semantic segmentation and show good performance. So, this paper proposes an improved GAN. Based on R2U-Net, the generator adds an attention mechanism, channel and spatial attention, which can reduce the loss of information and extract more effective features. We use dense connection modules in the discriminator. The dense connection module has the characteristics of alleviating gradient disappearance and realizing feature reuse. After a certain amount of iterative training, the generated prediction map and label map can be distinguished. Based on the loss function in the traditional GAN, we introduce the mean squared error. By using this loss, we ensure that the synthetic images contain more realistic blood vessel structures. The values of area under the curve (AUC) in the retinal blood vessel pixel segmentation of the three public data sets DRIVE, CHASE-DB1 and STARE of the proposed method are 0.9869, 0.9894 and 0.9885, respectively. The indicators of this experiment have improved compared to previous methods.
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Affiliation(s)
- Chen Yue
- School of Medical Information, Wannan Medical College, Wuhu 241002, China
- Research Center of Health Big Data Mining and Applications, Wannan Medical College, Wuhu 241002, China
| | - Mingquan Ye
- School of Medical Information, Wannan Medical College, Wuhu 241002, China
- Research Center of Health Big Data Mining and Applications, Wannan Medical College, Wuhu 241002, China
| | - Peipei Wang
- School of Medical Information, Wannan Medical College, Wuhu 241002, China
- Research Center of Health Big Data Mining and Applications, Wannan Medical College, Wuhu 241002, China
| | - Daobin Huang
- School of Medical Information, Wannan Medical College, Wuhu 241002, China
- Research Center of Health Big Data Mining and Applications, Wannan Medical College, Wuhu 241002, China
| | - Xiaojie Lu
- School of Medical Information, Wannan Medical College, Wuhu 241002, China
- Research Center of Health Big Data Mining and Applications, Wannan Medical College, Wuhu 241002, China
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Biswas S, Khan MIA, Hossain MT, Biswas A, Nakai T, Rohdin J. Which Color Channel Is Better for Diagnosing Retinal Diseases Automatically in Color Fundus Photographs? LIFE (BASEL, SWITZERLAND) 2022; 12:life12070973. [PMID: 35888063 PMCID: PMC9321111 DOI: 10.3390/life12070973] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/27/2022] [Revised: 05/25/2022] [Accepted: 06/01/2022] [Indexed: 11/22/2022]
Abstract
Color fundus photographs are the most common type of image used for automatic diagnosis of retinal diseases and abnormalities. As all color photographs, these images contain information about three primary colors, i.e., red, green, and blue, in three separate color channels. This work aims to understand the impact of each channel in the automatic diagnosis of retinal diseases and abnormalities. To this end, the existing works are surveyed extensively to explore which color channel is used most commonly for automatically detecting four leading causes of blindness and one retinal abnormality along with segmenting three retinal landmarks. From this survey, it is clear that all channels together are typically used for neural network-based systems, whereas for non-neural network-based systems, the green channel is most commonly used. However, from the previous works, no conclusion can be drawn regarding the importance of the different channels. Therefore, systematic experiments are conducted to analyse this. A well-known U-shaped deep neural network (U-Net) is used to investigate which color channel is best for segmenting one retinal abnormality and three retinal landmarks.
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Affiliation(s)
- Sangeeta Biswas
- Faculty of Engineering, University of Rajshahi, Rajshahi 6205, Bangladesh; (M.I.A.K.); (M.T.H.)
- Correspondence: or
| | - Md. Iqbal Aziz Khan
- Faculty of Engineering, University of Rajshahi, Rajshahi 6205, Bangladesh; (M.I.A.K.); (M.T.H.)
| | - Md. Tanvir Hossain
- Faculty of Engineering, University of Rajshahi, Rajshahi 6205, Bangladesh; (M.I.A.K.); (M.T.H.)
| | - Angkan Biswas
- CAPM Company Limited, Bonani, Dhaka 1213, Bangladesh;
| | - Takayoshi Nakai
- Faculty of Engineering, Shizuoka University, Hamamatsu 432-8561, Japan;
| | - Johan Rohdin
- Faculty of Information Technology, Brno University of Technology, 61200 Brno, Czech Republic;
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13
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Clinical applications and prospects of 3D printing guide templates in orthopaedics. J Orthop Translat 2022; 34:22-41. [PMID: 35615638 PMCID: PMC9117878 DOI: 10.1016/j.jot.2022.03.001] [Citation(s) in RCA: 24] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/14/2022] [Revised: 02/27/2022] [Accepted: 03/01/2022] [Indexed: 12/05/2022] Open
Abstract
Background With increasing requirements for medical effects, and huge differences among individuals, traditional surgical instruments are difficult to meet the patients' growing medical demands. 3D printing is increasingly mature, which connects to medical services critically as well. The patient specific surgical guide plate provides the condition for precision medicine in orthopaedics. Methods In this paper, a systematic review of the orthopedic guide template is presented, where the history of 3D-printing-guided technology, the process of guides, and basic clinical applications of orthopedic guide templates are described. Finally, the limitations of the template and possible future directions are discussed. Results The technology of 3D printing surgical templates is increasingly mature, standard, and intelligent. With the help of guide templates, the surgeon can easily determine the direction and depth of the screw path, and choose the angle and range of osteotomy, increasing the precision, safety, and reliability of the procedure in various types of surgeries. It simplifies the difficult surgical steps and accelerates the growth of young and mid-career physicians. But some problems such as cost, materials, and equipment limit its development. Conclusions In different fields of orthopedics, the use of guide templates can significantly improve surgical accuracy, shorten the surgical time, and reduce intraoperative bleeding and radiation. With the development of 3D printing, the guide template will be standardized and simplified from design to production and use. 3D printing guides will be further sublimated in the application of orthopedics and better serve the patients. The translational potential of this paper Precision, intelligence, and individuation are the future development direction of orthopedics. It is more and more popular as the price of printers falls and materials are developed. In addition, the technology of meta-universe, digital twin, and artificial intelligence have made revolutionary effects on template guides. We aim to summarize recent developments and applications of 3D printing guide templates for engineers and surgeons to develop more accurate and efficient templates.
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Balasuganya B, Chinnasamy A, Sheela D. An Effective Framework for the Classification of Retinopathy Grade and Risk of Macular Edema for Diabetic Retinopathy Images. JOURNAL OF MEDICAL IMAGING AND HEALTH INFORMATICS 2022. [DOI: 10.1166/jmihi.2022.3933] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
It is well know that for a diabetic patient, Diabetic Retinopathy (DR) is a speedy spreading infection which results in total loss of vision. Hence for diabetic patient, prior DR identification is important issue to protect eyes furthermore supportive for opportune treatment. The DR
identification should be possible physically and could likewise distinguished consequently. In previous framework, assessment of fundus pictures of retina for checking the phonological variety in Micro Aneurysms (MA), exudates, hemorrhages, macula and veins is a drawn-out and lavish errand.
However in the robotized framework, picture handling strategies can be utilized for before DR identification. Here, a framework for DR discovery is proposed. To start with, the information picture is pre-prepared utilizing crossover CLAHE and circular average filter round normal channel and
veins are extricated by Coye Filter. A short time later, picture is exposed to irregularities division, where division of MA, hemorrhages, exudates, and neovascularization are conveyed. Almost 36 distinct highlights are removed from sectioned pictures. A half breed salp swarm-feline multitude
advancement (CSO) calculation is used for choosing the appropriate highlights. At last, an arrangement is conveyed by changed RNN-LSTM. Three orders are conveyed, (I) Classification of kind of retinopathy, (ii) Classification of evaluation of retinopathy, (iii) Risk of Macular Edema (ME).
The order correctness’s got are: 99.73% for kind of DR, 95.6% for NPDR grade and 99.4% for NPDR Macular Edema Risk, 92.3% for PDR Macular Edema Risk. Our simulation results reveals that with Decision Tree (DT) and Random Forest (RF) Algorithm, this framework provides better results in
terms of accuracy of affectability and explicitness and Precision.
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Affiliation(s)
- B. Balasuganya
- Research Scholar Department of Information and Communication Engineering, Anna University, Guindy, Chennai 600025, Tamil Nadu, India
| | - A. Chinnasamy
- Department of Computer Science and Engineering, Sri Sairam Engineering College, Chennai 600044, Tamil Nadu, India
| | - D. Sheela
- Department of Electronics and Communication Engineering, Saveetha School of Engineering, Saveetha University, Chennai 602105, Tamil Nadu, India
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Çetinkaya MB, Duran H. A detailed and comparative work for retinal vessel segmentation based on the most effective heuristic approaches. ACTA ACUST UNITED AC 2021; 66:181-200. [PMID: 33768764 DOI: 10.1515/bmt-2020-0089] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2020] [Accepted: 09/28/2020] [Indexed: 11/15/2022]
Abstract
Computer based imaging and analysis techniques are frequently used for the diagnosis and treatment of retinal diseases. Although retinal images are of high resolution, the contrast of the retinal blood vessels is usually very close to the background of the retinal image. The detection of the retinal blood vessels with low contrast or with contrast close to the background of the retinal image is too difficult. Therefore, improving algorithms which can successfully distinguish retinal blood vessels from the retinal image has become an important area of research. In this work, clustering based heuristic artificial bee colony, particle swarm optimization, differential evolution, teaching learning based optimization, grey wolf optimization, firefly and harmony search algorithms were applied for accurate segmentation of retinal vessels and their performances were compared in terms of convergence speed, mean squared error, standard deviation, sensitivity, specificity. accuracy and precision. From the simulation results it is seen that the performance of the algorithms in terms of convergence speed and mean squared error is close to each other. It is observed from the statistical analyses that the algorithms show stable behavior and also the vessel and the background pixels of the retinal image can successfully be clustered by the heuristic algorithms.
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Affiliation(s)
- Mehmet Bahadır Çetinkaya
- Department of Mechatronics Engineering, Faculty of Engineering, University of Erciyes, Melikgazi, Kayseri, Turkey
| | - Hakan Duran
- Department of Mechatronics Engineering, Faculty of Engineering, University of Erciyes, Melikgazi, Kayseri, Turkey
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Automated Detection and Tortuosity Characterization of Retinal Vascular Networks. JOURNAL OF BIOMIMETICS BIOMATERIALS AND BIOMEDICAL ENGINEERING 2021. [DOI: 10.4028/www.scientific.net/jbbbe.50.89] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Automated retinal vascular network detection and analysis using digital retinal images continue to play a major role in the field of biomedicine for the diagnosis and management of various forms of human ailments like hypertension, diabetic retinopathy, retinopathy of prematurity, glaucoma and cardiovascular diseases. Although several literature have implemented different automatic approaches of detecting blood vessels in the retinal and also determining their tortuous states, the results obtained show that there are needs for further investigation on more efficient ways to detect and characterize the blood vessel network tortuosity states. This paper implements the use of an adaptive thresholding method based on local spatial relational variance (LSRV) for the detection of the retinal vascular networks. The suitability of a multi-layer perceptron artificial neural network (MLP-ANN) technique for the tortuosity characterization of retinal blood vascular networks is also presented in this paper. Some vessel geometric features of detected vessels are fed into ANN classifier for the automatic classification of the retinal vascular networks as being tortuous vessels or normal vessels. Experimental studies conducted on DRIVE and STARE databases show that the vascular network detection results obtained from the method implemented in this paper detects large and thin vascular networks in the retina. In comparison to preious methods in the literature, the proposed method for vascular network segmentation achieved better performance than several methods in the literature with a mean accuracy value of 95.04% and mean sensitivity value of 75.16% on DRIVE and mean accuracy value of 94.02% and average sensitivity value of 76.55% on STARE with computational processing time of 4.5 seconds and 9.4 seconds on DRIVE and STARE respectively. The MLP-ANN method proposed for the vascular network tortuosity characterization achieves promising accuracy rates of 77.5%, 80%, 83.33%, 85%, 86.67% and 100% for varying training sample sizes.
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Bai R, Jiang S, Sun H, Yang Y, Li G. Deep Neural Network-Based Semantic Segmentation of Microvascular Decompression Images. SENSORS 2021; 21:s21041167. [PMID: 33562275 PMCID: PMC7915571 DOI: 10.3390/s21041167] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/31/2020] [Revised: 01/26/2021] [Accepted: 02/02/2021] [Indexed: 11/30/2022]
Abstract
Image semantic segmentation has been applied more and more widely in the fields of satellite remote sensing, medical treatment, intelligent transportation, and virtual reality. However, in the medical field, the study of cerebral vessel and cranial nerve segmentation based on true-color medical images is in urgent need and has good research and development prospects. We have extended the current state-of-the-art semantic-segmentation network DeepLabv3+ and used it as the basic framework. First, the feature distillation block (FDB) was introduced into the encoder structure to refine the extracted features. In addition, the atrous spatial pyramid pooling (ASPP) module was added to the decoder structure to enhance the retention of feature and boundary information. The proposed model was trained by fine tuning and optimizing the relevant parameters. Experimental results show that the encoder structure has better performance in feature refinement processing, improving target boundary segmentation precision, and retaining more feature information. Our method has a segmentation accuracy of 75.73%, which is 3% better than DeepLabv3+.
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Affiliation(s)
- Ruifeng Bai
- Changchun Institute of Optics, Fine Mechanics and Physics, Chinese Academy of Sciences, Changchun 130033, China; (R.B.); (H.S.); (Y.Y.); (G.L.)
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Shan Jiang
- Changchun Institute of Optics, Fine Mechanics and Physics, Chinese Academy of Sciences, Changchun 130033, China; (R.B.); (H.S.); (Y.Y.); (G.L.)
- Correspondence: ; Tel.: +86-187-4401-2663
| | - Haijiang Sun
- Changchun Institute of Optics, Fine Mechanics and Physics, Chinese Academy of Sciences, Changchun 130033, China; (R.B.); (H.S.); (Y.Y.); (G.L.)
| | - Yifan Yang
- Changchun Institute of Optics, Fine Mechanics and Physics, Chinese Academy of Sciences, Changchun 130033, China; (R.B.); (H.S.); (Y.Y.); (G.L.)
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Guiju Li
- Changchun Institute of Optics, Fine Mechanics and Physics, Chinese Academy of Sciences, Changchun 130033, China; (R.B.); (H.S.); (Y.Y.); (G.L.)
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18
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Efficient BFCN for Automatic Retinal Vessel Segmentation. J Ophthalmol 2021; 2020:6439407. [PMID: 33489334 PMCID: PMC7803293 DOI: 10.1155/2020/6439407] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2020] [Revised: 09/03/2020] [Accepted: 09/09/2020] [Indexed: 11/22/2022] Open
Abstract
Retinal vessel segmentation has high value for the research on the diagnosis of diabetic retinopathy, hypertension, and cardiovascular and cerebrovascular diseases. Most methods based on deep convolutional neural networks (DCNN) do not have large receptive fields or rich spatial information and cannot capture global context information of the larger areas. Therefore, it is difficult to identify the lesion area, and the segmentation efficiency is poor. This paper presents a butterfly fully convolutional neural network (BFCN). First, in view of the low contrast between blood vessels and the background in retinal blood vessel images, this paper uses automatic color enhancement (ACE) technology to increase the contrast between blood vessels and the background. Second, using the multiscale information extraction (MSIE) module in the backbone network can capture the global contextual information in a larger area to reduce the loss of feature information. At the same time, using the transfer layer (T_Layer) can not only alleviate gradient vanishing problem and repair the information loss in the downsampling process but also obtain rich spatial information. Finally, for the first time in the paper, the segmentation image is postprocessed, and the Laplacian sharpening method is used to improve the accuracy of vessel segmentation. The method mentioned in this paper has been verified by the DRIVE, STARE, and CHASE datasets, with the accuracy of 0.9627, 0.9735, and 0.9688, respectively.
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19
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Samuel PM, Veeramalai T. VSSC Net: Vessel Specific Skip chain Convolutional Network for blood vessel segmentation. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2021; 198:105769. [PMID: 33039919 DOI: 10.1016/j.cmpb.2020.105769] [Citation(s) in RCA: 32] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2020] [Accepted: 09/18/2020] [Indexed: 06/11/2023]
Abstract
BACKGROUND AND OBJECTIVE Deep learning techniques are instrumental in developing network models that aid in the early diagnosis of life-threatening diseases. To screen and diagnose the retinal fundus and coronary blood vessel disorders, the most important step is the proper segmentation of the blood vessels. METHODS This paper aims to segment the blood vessels from both the coronary angiogram and the retinal fundus images using a single VSSC Net after performing the image-specific preprocessing. The VSSC Net uses two-vessel extraction layers with added supervision on top of the base VGG-16 network. The vessel extraction layers comprise of the vessel-specific convolutional blocks to localize the blood vessels, skip chain convolutional layers to enable rich feature propagation, and a unique feature map summation. Supervision is associated with the two-vessel extraction layers using separate loss/sigmoid function. Finally, the weighted fusion of the individual loss/sigmoid function produces the desired blood vessel probability map. It is then binary segmented and validated for performance. RESULTS The VSSC Net shows improved accuracy values on the standard retinal and coronary angiogram datasets respectively. The computational time required to segment the blood vessels is 0.2 seconds using GPU. Moreover, the vessel extraction layer uses a lesser parameter count of 0.4 million parameters to accurately segment the blood vessels. CONCLUSION The proposed VSSC Net that segments blood vessels from both the retinal fundus images and coronary angiogram can be used for the early diagnosis of vessel disorders. Moreover, it could aid the physician to analyze the blood vessel structure of images obtained from multiple imaging sources.
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Affiliation(s)
- Pearl Mary Samuel
- School of Electronics Engineering, Vellore Institute of Technology, Vellore, India.
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20
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Mookiah MRK, Hogg S, MacGillivray TJ, Prathiba V, Pradeepa R, Mohan V, Anjana RM, Doney AS, Palmer CNA, Trucco E. A review of machine learning methods for retinal blood vessel segmentation and artery/vein classification. Med Image Anal 2020; 68:101905. [PMID: 33385700 DOI: 10.1016/j.media.2020.101905] [Citation(s) in RCA: 58] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2019] [Revised: 11/10/2020] [Accepted: 11/11/2020] [Indexed: 12/20/2022]
Abstract
The eye affords a unique opportunity to inspect a rich part of the human microvasculature non-invasively via retinal imaging. Retinal blood vessel segmentation and classification are prime steps for the diagnosis and risk assessment of microvascular and systemic diseases. A high volume of techniques based on deep learning have been published in recent years. In this context, we review 158 papers published between 2012 and 2020, focussing on methods based on machine and deep learning (DL) for automatic vessel segmentation and classification for fundus camera images. We divide the methods into various classes by task (segmentation or artery-vein classification), technique (supervised or unsupervised, deep and non-deep learning, hand-crafted methods) and more specific algorithms (e.g. multiscale, morphology). We discuss advantages and limitations, and include tables summarising results at-a-glance. Finally, we attempt to assess the quantitative merit of DL methods in terms of accuracy improvement compared to other methods. The results allow us to offer our views on the outlook for vessel segmentation and classification for fundus camera images.
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Affiliation(s)
| | - Stephen Hogg
- VAMPIRE project, Computing (SSEN), University of Dundee, Dundee DD1 4HN, UK
| | - Tom J MacGillivray
- VAMPIRE project, Centre for Clinical Brain Sciences, University of Edinburgh, Edinburgh EH16 4SB, UK
| | - Vijayaraghavan Prathiba
- Madras Diabetes Research Foundation and Dr. Mohan's Diabetes Specialities Centre, Gopalapuram, Chennai 600086, India
| | - Rajendra Pradeepa
- Madras Diabetes Research Foundation and Dr. Mohan's Diabetes Specialities Centre, Gopalapuram, Chennai 600086, India
| | - Viswanathan Mohan
- Madras Diabetes Research Foundation and Dr. Mohan's Diabetes Specialities Centre, Gopalapuram, Chennai 600086, India
| | - Ranjit Mohan Anjana
- Madras Diabetes Research Foundation and Dr. Mohan's Diabetes Specialities Centre, Gopalapuram, Chennai 600086, India
| | - Alexander S Doney
- Division of Population Health and Genomics, Ninewells Hospital and Medical School, University of Dundee, Dundee, DD1 9SY, UK
| | - Colin N A Palmer
- Division of Population Health and Genomics, Ninewells Hospital and Medical School, University of Dundee, Dundee, DD1 9SY, UK
| | - Emanuele Trucco
- VAMPIRE project, Computing (SSEN), University of Dundee, Dundee DD1 4HN, UK
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21
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Farahani A, Mohseni H. Medical image segmentation using customized U-Net with adaptive activation functions. Neural Comput Appl 2020. [DOI: 10.1007/s00521-020-05396-3] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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22
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Siddique F, Iqbal T, Awan SM, Mahmood Z, Khan GZ. A Robust Segmentation of Blood Vessels in Retinal Images. 2019 INTERNATIONAL CONFERENCE ON FRONTIERS OF INFORMATION TECHNOLOGY (FIT) 2019. [DOI: 10.1109/fit47737.2019.00025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/01/2023]
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23
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Recent Trends, Technical Concepts and Components of Computer-Assisted Orthopedic Surgery Systems: A Comprehensive Review. SENSORS 2019; 19:s19235199. [PMID: 31783631 PMCID: PMC6929084 DOI: 10.3390/s19235199] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/20/2019] [Revised: 11/08/2019] [Accepted: 11/12/2019] [Indexed: 12/17/2022]
Abstract
Computer-assisted orthopedic surgery (CAOS) systems have become one of the most important and challenging types of system in clinical orthopedics, as they enable precise treatment of musculoskeletal diseases, employing modern clinical navigation systems and surgical tools. This paper brings a comprehensive review of recent trends and possibilities of CAOS systems. There are three types of the surgical planning systems, including: systems based on the volumetric images (computer tomography (CT), magnetic resonance imaging (MRI) or ultrasound images), further systems utilize either 2D or 3D fluoroscopic images, and the last one utilizes the kinetic information about the joints and morphological information about the target bones. This complex review is focused on three fundamental aspects of CAOS systems: their essential components, types of CAOS systems, and mechanical tools used in CAOS systems. In this review, we also outline the possibilities for using ultrasound computer-assisted orthopedic surgery (UCAOS) systems as an alternative to conventionally used CAOS systems.
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24
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Singh N, Kaur L, Singh K. Segmentation of retinal blood vessels based on feature-oriented dictionary learning and sparse coding using ensemble classification approach. J Med Imaging (Bellingham) 2019; 6:044006. [DOI: 10.1117/1.jmi.6.4.044006] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2018] [Accepted: 11/04/2019] [Indexed: 11/14/2022] Open
Affiliation(s)
- Navdeep Singh
- Punjabi University, Department of Computer Science and Engineering, Patiala, Punjab
| | - Lakhwinder Kaur
- Punjabi University, Department of Computer Science and Engineering, Patiala, Punjab
| | - Kuldeep Singh
- Malaviya National Institute of Technology, Jaipur, Rajasthan
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25
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Multilevel and Multiscale Deep Neural Network for Retinal Blood Vessel Segmentation. Symmetry (Basel) 2019. [DOI: 10.3390/sym11070946] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023] Open
Abstract
Retinal blood vessel segmentation influences a lot of blood vessel-related disorders such as diabetic retinopathy, hypertension, cardiovascular and cerebrovascular disorders, etc. It is found that vessel segmentation using a convolutional neural network (CNN) showed increased accuracy in feature extraction and vessel segmentation compared to the classical segmentation algorithms. CNN does not need any artificial handcrafted features to train the network. In the proposed deep neural network (DNN), a better pre-processing technique and multilevel/multiscale deep supervision (DS) layers are being incorporated for proper segmentation of retinal blood vessels. From the first four layers of the VGG-16 model, multilevel/multiscale deep supervision layers are formed by convolving vessel-specific Gaussian convolutions with two different scale initializations. These layers output the activation maps that are capable to learn vessel-specific features at multiple scales, levels, and depth. Furthermore, the receptive field of these maps is increased to obtain the symmetric feature maps that provide the refined blood vessel probability map. This map is completely free from the optic disc, boundaries, and non-vessel background. The segmented results are tested on Digital Retinal Images for Vessel Extraction (DRIVE), STructured Analysis of the Retina (STARE), High-Resolution Fundus (HRF), and real-world retinal datasets to evaluate its performance. This proposed model achieves better sensitivity values of 0.8282, 0.8979 and 0.8655 in DRIVE, STARE and HRF datasets with acceptable specificity and accuracy performance metrics.
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26
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Primitivo D, Alma R, Erik C, Arturo V, Edgar C, Marco PC, Daniel Z. A hybrid method for blood vessel segmentation in images. Biocybern Biomed Eng 2019. [DOI: 10.1016/j.bbe.2019.06.009] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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27
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Budzan S, Buchczik D, Pawełczyk M, Tůma J. Combining Segmentation and Edge Detection for Efficient Ore Grain Detection in an Electromagnetic Mill Classification System. SENSORS 2019; 19:s19081805. [PMID: 30991763 PMCID: PMC6515149 DOI: 10.3390/s19081805] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/17/2019] [Revised: 04/04/2019] [Accepted: 04/13/2019] [Indexed: 11/16/2022]
Abstract
This paper presents a machine vision method for detection and classification of copper ore grains. We proposed a new method that combines both seeded regions growing segmentation and edge detection, where region growing is limited only to grain boundaries. First, a 2D Fast Fourier Transform (2DFFT) and Gray-Level Co-occurrence Matrix (GLCM) are calculated to improve the detection results and processing time by eliminating poor quality samples. Next, detection of copper ore grains is performed, based on region growing, improved by the first and second derivatives with a modified Niblack's theory and a threshold selection method. Finally, all the detected grains are characterized by a set of shape features, which are used to classify the grains into separate fractions. The efficiency of the algorithm was evaluated with real copper ore samples of known granularity. The proposed method generates information on different granularity fractions at a time with a number of grain shape features.
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Affiliation(s)
- Sebastian Budzan
- Institute of Automatic Control, Silesian University of Technology, Akademicka 16, 44-100 Gliwice, Poland.
| | - Dariusz Buchczik
- Institute of Automatic Control, Silesian University of Technology, Akademicka 16, 44-100 Gliwice, Poland.
| | - Marek Pawełczyk
- Institute of Automatic Control, Silesian University of Technology, Akademicka 16, 44-100 Gliwice, Poland.
| | - Jiří Tůma
- Department of Control Systems and Instrumentation, VŠB-Technical University of Ostrava, 17. listopadu 15/2172, 708 33 Ostrava-Poruba, Czech Republic.
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28
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Atlas LLG, Parasuraman K. Effective Approach to Classify and Segment Retinal Hemorrhage Using ANFIS and Particle Swarm Optimization. JOURNAL OF INTELLIGENT SYSTEMS 2018. [DOI: 10.1515/jisys-2016-0354] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022] Open
Abstract
Abstract
The main objective of this study is to progress the structure and segment the images from hemorrhage recognition in retinal fundus images in ostensible. The abnormal bleeding of blood vessels in the retina which is the membrane in the back of the eye is called retinal hemorrhage. The image folders are deliberated, and the filter technique is utilized to decrease the images specifically adaptive median filter in our suggested proposal. Gray level co-occurrence matrix (GLCM), grey level run length matrix (GLRLM) and Scale invariant feature transform (SIFT) feature skills are present after filtrating the feature withdrawal. After this, the organization technique is performed, specifically artificial neural network with fuzzy interface system (ANFIS) method; with the help of this organization, exaggerated and non-affected images are categorized. Affected hemorrhage images are transpired for segmentation procedure, and in this exertion, threshold optimization is measured with numerous optimization methods; on the basis of this, particle swarm optimization is accomplished in improved manner. Consequently, the segmented images are projected, and the sensitivity is great when associating with accurateness and specificity in the MATLAB platform.
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29
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Khan KB, Khaliq AA, Jalil A, Iftikhar MA, Ullah N, Aziz MW, Ullah K, Shahid M. A review of retinal blood vessels extraction techniques: challenges, taxonomy, and future trends. Pattern Anal Appl 2018. [DOI: 10.1007/s10044-018-0754-8] [Citation(s) in RCA: 39] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
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30
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Khan KB, Khaliq AA, Jalil A, Shahid M. A robust technique based on VLM and Frangi filter for retinal vessel extraction and denoising. PLoS One 2018; 13:e0192203. [PMID: 29432464 PMCID: PMC5809116 DOI: 10.1371/journal.pone.0192203] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2016] [Accepted: 01/12/2018] [Indexed: 11/18/2022] Open
Abstract
The exploration of retinal vessel structure is colossally important on account of numerous diseases including stroke, Diabetic Retinopathy (DR) and coronary heart diseases, which can damage the retinal vessel structure. The retinal vascular network is very hard to be extracted due to its spreading and diminishing geometry and contrast variation in an image. The proposed technique consists of unique parallel processes for denoising and extraction of blood vessels in retinal images. In the preprocessing section, an adaptive histogram equalization enhances dissimilarity between the vessels and the background and morphological top-hat filters are employed to eliminate macula and optic disc, etc. To remove local noise, the difference of images is computed from the top-hat filtered image and the high-boost filtered image. Frangi filter is applied at multi scale for the enhancement of vessels possessing diverse widths. Segmentation is performed by using improved Otsu thresholding on the high-boost filtered image and Frangi's enhanced image, separately. In the postprocessing steps, a Vessel Location Map (VLM) is extracted by using raster to vector transformation. Postprocessing steps are employed in a novel way to reject misclassified vessel pixels. The final segmented image is obtained by using pixel-by-pixel AND operation between VLM and Frangi output image. The method has been rigorously analyzed on the STARE, DRIVE and HRF datasets.
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Affiliation(s)
- Khan Bahadar Khan
- Department of Telecommunication Engineering, The Islamia University Bahawalpur, Pakistan
- Department of Electronic Engineering, International Islamic University, Islamabad, Pakistan
- * E-mail:
| | - Amir. A. Khaliq
- Department of Electronic Engineering, International Islamic University, Islamabad, Pakistan
| | - Abdul Jalil
- Department of Electronic Engineering, International Islamic University, Islamabad, Pakistan
| | - Muhammad Shahid
- Al-Khawarizmi Institute of Computer Science, UET Lahore, Pakistan
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31
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Abstract
Retinal vessel tree extraction is a crucial step for analyzing the microcirculation, a frequently needed process in the study of relevant diseases. To date, this has normally been done by using 2D image capture paradigms, offering a restricted visualization of the real layout of the retinal vasculature. In this work, we propose a new approach that automatically segments and reconstructs the 3D retinal vessel tree by combining near-infrared reflectance retinography information with Optical Coherence Tomography (OCT) sections. Our proposal identifies the vessels, estimates their calibers, and obtains the depth at all the positions of the entire vessel tree, thereby enabling the reconstruction of the 3D layout of the complete arteriovenous tree for subsequent analysis. The method was tested using 991 OCT images combined with their corresponding near-infrared reflectance retinography. The different stages of the methodology were validated using the opinion of an expert as a reference. The tests offered accurate results, showing coherent reconstructions of the 3D vasculature that can be analyzed in the diagnosis of relevant diseases affecting the retinal microcirculation, such as hypertension or diabetes, among others.
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32
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L Srinidhi C, Aparna P, Rajan J. Recent Advancements in Retinal Vessel Segmentation. J Med Syst 2017; 41:70. [DOI: 10.1007/s10916-017-0719-2] [Citation(s) in RCA: 67] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2017] [Accepted: 03/01/2017] [Indexed: 11/28/2022]
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33
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Vostatek P, Claridge E, Uusitalo H, Hauta-Kasari M, Fält P, Lensu L. Performance comparison of publicly available retinal blood vessel segmentation methods. Comput Med Imaging Graph 2017; 55:2-12. [DOI: 10.1016/j.compmedimag.2016.07.005] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2016] [Revised: 07/18/2016] [Accepted: 07/21/2016] [Indexed: 10/21/2022]
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34
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Chen X, Xu L, Wang W, Li X, Sun Y, Politis C. Computer-aided design and manufacturing of surgical templates and their clinical applications: a review. Expert Rev Med Devices 2016; 13:853-64. [DOI: 10.1080/17434440.2016.1218758] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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35
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Ciaccio EJ. Honored papers 2015. Comput Biol Med 2016. [DOI: 10.1016/j.compbiomed.2016.05.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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