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Campos I, Gonçalves H, Bernardes J, Castro L. Fetal Heart Rate Preprocessing Techniques: A Scoping Review. Bioengineering (Basel) 2024; 11:368. [PMID: 38671789 PMCID: PMC11048563 DOI: 10.3390/bioengineering11040368] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Revised: 04/01/2024] [Accepted: 04/06/2024] [Indexed: 04/28/2024] Open
Abstract
Monitoring fetal heart rate (FHR) through cardiotocography is crucial for the early diagnosis of fetal distress situations, necessitating prompt obstetrical intervention. However, FHR signals are often marred by various contaminants, making preprocessing techniques essential for accurate analysis. This scoping review, following PRISMA-ScR guidelines, describes the preprocessing methods in original research articles on human FHR (or beat-to-beat intervals) signal preprocessing from PubMed and Web of Science, published from their inception up to May 2021. From the 322 unique articles identified, 54 were included, from which prevalent preprocessing approaches were identified, primarily focusing on the detection and correction of poor signal quality events. Detection usually entailed analyzing deviations from neighboring samples, whereas correction often relied on interpolation techniques. It was also noted that there is a lack of consensus regarding the definition of missing samples, outliers, and artifacts. Trends indicate a surge in research interest in the decade 2011-2021. This review underscores the need for standardizing FHR signal preprocessing techniques to enhance diagnostic accuracy. Future work should focus on applying and evaluating these methods across FHR databases aiming to assess their effectiveness and propose improvements.
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Affiliation(s)
- Inês Campos
- Faculty of Engineering, University of Porto, 4200-465 Porto, Portugal
- Institute of Biomedical Sciences Abel Salazar, University of Porto, 4050-313 Porto, Portugal
| | - Hernâni Gonçalves
- Center for Health Technology and Services Research (CINTESIS@RISE), Faculty of Medicine, University of Porto, 4200-319 Porto, Portugal; (H.G.); (J.B.)
- Department of Community Medicine, Information and Health Decision Sciences (MEDCIDS), Faculty of Medicine, University of Porto, 4200-319 Porto, Portugal
| | - João Bernardes
- Center for Health Technology and Services Research (CINTESIS@RISE), Faculty of Medicine, University of Porto, 4200-319 Porto, Portugal; (H.G.); (J.B.)
- Department of Obstetrics and Gynecology, Faculty of Medicine, University of Porto, 4200-319 Porto, Portugal
- Department of Obstetrics and Gynecology, São João Hospital, 4200-319 Porto, Portugal
| | - Luísa Castro
- Center for Health Technology and Services Research (CINTESIS@RISE), Faculty of Medicine, University of Porto, 4200-319 Porto, Portugal; (H.G.); (J.B.)
- Department of Community Medicine, Information and Health Decision Sciences (MEDCIDS), Faculty of Medicine, University of Porto, 4200-319 Porto, Portugal
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Francis F, Luz S, Wu H, Stock SJ, Townsend R. Machine learning on cardiotocography data to classify fetal outcomes: A scoping review. Comput Biol Med 2024; 172:108220. [PMID: 38489990 DOI: 10.1016/j.compbiomed.2024.108220] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2023] [Revised: 02/02/2024] [Accepted: 02/25/2024] [Indexed: 03/17/2024]
Abstract
INTRODUCTION Uterine contractions during labour constrict maternal blood flow and oxygen delivery to the developing baby, causing transient hypoxia. While most babies are physiologically adapted to withstand such intrapartum hypoxia, those exposed to severe hypoxia or with poor physiological reserves may experience neurological injury or death during labour. Cardiotocography (CTG) monitoring was developed to identify babies at risk of hypoxia by detecting changes in fetal heart rate (FHR) patterns. CTG monitoring is in widespread use in intrapartum care for the detection of fetal hypoxia, but the clinical utility is limited by a relatively poor positive predictive value (PPV) of an abnormal CTG and significant inter and intra observer variability in CTG interpretation. Clinical risk and human factors may impact the quality of CTG interpretation. Misclassification of CTG traces may lead to both under-treatment (with the risk of fetal injury or death) or over-treatment (which may include unnecessary operative interventions that put both mother and baby at risk of complications). Machine learning (ML) has been applied to this problem since early 2000 and has shown potential to predict fetal hypoxia more accurately than visual interpretation of CTG alone. To consider how these tools might be translated for clinical practice, we conducted a review of ML techniques already applied to CTG classification and identified research gaps requiring investigation in order to progress towards clinical implementation. MATERIALS AND METHOD We used identified keywords to search databases for relevant publications on PubMed, EMBASE and IEEE Xplore. We used Preferred Reporting Items for Systematic Review and Meta-Analysis for Scoping Reviews (PRISMA-ScR). Title, abstract and full text were screened according to the inclusion criteria. RESULTS We included 36 studies that used signal processing and ML techniques to classify CTG. Most studies used an open-access CTG database and predominantly used fetal metabolic acidosis as the benchmark for hypoxia with varying pH levels. Various methods were used to process and extract CTG signals and several ML algorithms were used to classify CTG. We identified significant concerns over the practicality of using varying pH levels as the CTG classification benchmark. Furthermore, studies needed to be more generalised as most used the same database with a low number of subjects for an ML study. CONCLUSION ML studies demonstrate potential in predicting fetal hypoxia from CTG. However, more diverse datasets, standardisation of hypoxia benchmarks and enhancement of algorithms and features are needed for future clinical implementation.
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Affiliation(s)
| | | | - Honghan Wu
- Institute of Health Informatics, University College London, UK
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Jager F. An open dataset with electrohysterogram records of pregnancies ending in induced and cesarean section delivery. Sci Data 2023; 10:669. [PMID: 37783671 PMCID: PMC10545725 DOI: 10.1038/s41597-023-02581-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2023] [Accepted: 09/20/2023] [Indexed: 10/04/2023] Open
Abstract
The existing non-invasive automated preterm birth prediction methods rely on the use of uterine electrohysterogram (EHG) records coming from spontaneous preterm and term deliveries, and are indifferent to term induced and cesarean section deliveries. In order to enhance current publicly available pool of term EHG records, we developed a new EHG dataset, Induced Cesarean EHG DataSet (ICEHG DS), containing 126 30-minute EHG records, recorded early (23rd week), and/or later (31st week) during pregnancy, of those pregnancies that were expected to end in spontaneous term delivery, but ended in induced or cesarean section delivery. The records were collected at the University Medical Center Ljubljana, Ljubljana, Slovenia. The dataset includes 38 and 43, early and later, induced; 11 and 8, early and later, cesarean; and 13 and 13, early and later, induced and cesarean EHG records. This dataset enables better understanding of the underlying physiological mechanisms involved during pregnancies ending in induced and cesarean deliveries, and provides a robust and more realistic assessment of the performance of automated preterm birth prediction methods.
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Affiliation(s)
- Franc Jager
- Faculty of Computer and Information Science, University of Ljubljana, Večna pot 113, 1000, Ljubljana, Slovenia.
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Cao Q, Sun H, Wang H, Liu X, Lu Y, Huo L. Comparative study of neonatal brain injury fetuses using machine learning methods for perinatal data. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2023; 240:107701. [PMID: 37480645 DOI: 10.1016/j.cmpb.2023.107701] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/04/2021] [Revised: 06/20/2023] [Accepted: 06/28/2023] [Indexed: 07/24/2023]
Abstract
OBJECTIVE CTG is used to record the fetus's fetal heart rate and uterine contraction signal during pregnancy. The prenatal fetal intrauterine monitoring level can be used to evaluate the fetal intrauterine safety status and reduce the morbidity and mortality of the perinatal fetus. Perinatal asphyxia is the leading cause of neonatal hypoxic-ischemic encephalopathy and one of the leading causes of neonatal death and disability. Severe asphyxia can cause brain and permanent nervous system damage and leave different degrees of nervous system sequelae. METHODS This paper evaluates the classification performance of several machine learning methods on CTG and provides the auxiliary ability of clinical judgment of doctors. This paper uses the data set on the public database UCI, with 2126 samples. RESULTS The accuracy of each model exceeds 80%, of which XGBoost has the highest accuracy of 91%. Other models are Random tree (90%), light (90%), Decision tree (83%), and KNN (81%). The performance of the model in other indicators is XGBoost (precision: 90%, recall: 93%, F1 score: 90%), Random tree (precision: 88%, recall: 91%, F1 score: 89%), lightGBM (precision: 87%, recall: 93%, F1 score: 90%), Decision tree (precision: 83%, recall: 86%, F1 score: 84%), KNN (precision: 77%, recall: 85%, F1 score: 81%). CONCLUSION The performance of XGBoost is the best of all models. This result also shows that using the machine learning method to evaluate the fetus's health status in CTG data is feasible. This will also provide and assist doctors with an objective assessment to assist in clinical diagnosis.
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Affiliation(s)
- Qingjun Cao
- Department of Pediatrics, Shengjing Hospital of China Medical University, Shenyang 110004, China
| | - Hongzan Sun
- Department of Radiology, Shengjing Hospital of China Medical University, Shenyang 110004, China
| | - Hua Wang
- Department of Pediatrics, Shengjing Hospital of China Medical University, Shenyang 110004, China
| | - Xueyan Liu
- Department of Pediatrics, Shengjing Hospital of China Medical University, Shenyang 110004, China
| | - Yu Lu
- College of Big Data and Internet, Shenzhen Technology University, Shenzhen 518118, China
| | - Liang Huo
- Department of Pediatrics, Shengjing Hospital of China Medical University, Shenyang 110004, China.
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Francis F, Luz S, Wu H, Townsend R, Stock SS. Machine Learning to Classify Cardiotocography for Fetal Hypoxia Detection. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2023; 2023:1-4. [PMID: 38083272 DOI: 10.1109/embc40787.2023.10340803] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2023]
Abstract
Fetal hypoxia can cause damaging consequences on babies' such as stillbirth and cerebral palsy. Cardiotocography (CTG) has been used to detect intrapartum fetal hypoxia during labor. It is a non-invasive machine that measures the fetal heart rate and uterine contractions. Visual CTG suffers inconsistencies in interpretations among clinicians that can delay interventions. Machine learning (ML) showed potential in classifying abnormal CTG, allowing automatic interpretation. In the absence of a gold standard, researchers used various surrogate biomarkers to classify CTG, where some were clinically irrelevant. We proposed using Apgar scores as the surrogate benchmark of babies' ability to recover from birth. Apgar scores measure newborns' ability to recover from active uterine contraction, which measures appearance, pulse, grimace, activity and respiration. The higher the Apgar score, the healthier the baby is.We employ signal processing methods to pre-process and extract validated features of 552 raw CTG. We also included CTG-specific characteristics as outlined in the NICE guidelines. We employed ML techniques using 22 features and measured performances between ML classifiers. While we found that ML can distinguish CTG with low Apgar scores, results for the lowest Apgar scores, which are rare in the dataset we used, would benefit from more CTG data for better performance. We need an external dataset to validate our model for generalizability to ensure that it does not overfit a specific population.Clinical Relevance- This study demonstrated the potential of using a clinically relevant benchmark for classifying CTG to allow automatic early detection of hypoxia to reduce decision-making time in maternity units.
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Mennickent D, Rodríguez A, Opazo MC, Riedel CA, Castro E, Eriz-Salinas A, Appel-Rubio J, Aguayo C, Damiano AE, Guzmán-Gutiérrez E, Araya J. Machine learning applied in maternal and fetal health: a narrative review focused on pregnancy diseases and complications. Front Endocrinol (Lausanne) 2023; 14:1130139. [PMID: 37274341 PMCID: PMC10235786 DOI: 10.3389/fendo.2023.1130139] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/22/2022] [Accepted: 05/04/2023] [Indexed: 06/06/2023] Open
Abstract
Introduction Machine learning (ML) corresponds to a wide variety of methods that use mathematics, statistics and computational science to learn from multiple variables simultaneously. By means of pattern recognition, ML methods are able to find hidden correlations and accomplish accurate predictions regarding different conditions. ML has been successfully used to solve varied problems in different areas of science, such as psychology, economics, biology and chemistry. Therefore, we wondered how far it has penetrated into the field of obstetrics and gynecology. Aim To describe the state of art regarding the use of ML in the context of pregnancy diseases and complications. Methodology Publications were searched in PubMed, Web of Science and Google Scholar. Seven subjects of interest were considered: gestational diabetes mellitus, preeclampsia, perinatal death, spontaneous abortion, preterm birth, cesarean section, and fetal malformations. Current state ML has been widely applied in all the included subjects. Its uses are varied, the most common being the prediction of perinatal disorders. Other ML applications include (but are not restricted to) biomarker discovery, risk estimation, correlation assessment, pharmacological treatment prediction, drug screening, data acquisition and data extraction. Most of the reviewed articles were published in the last five years. The most employed ML methods in the field are non-linear. Except for logistic regression, linear methods are rarely used. Future challenges To improve data recording, storage and update in medical and research settings from different realities. To develop more accurate and understandable ML models using data from cutting-edge instruments. To carry out validation and impact analysis studies of currently existing high-accuracy ML models. Conclusion The use of ML in pregnancy diseases and complications is quite recent, and has increased over the last few years. The applications are varied and point not only to the diagnosis, but also to the management, treatment, and pathophysiological understanding of perinatal alterations. Facing the challenges that come with working with different types of data, the handling of increasingly large amounts of information, the development of emerging technologies, and the need of translational studies, it is expected that the use of ML continue growing in the field of obstetrics and gynecology.
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Affiliation(s)
- Daniela Mennickent
- Departamento de Bioquímica Clínica e Inmunología, Facultad de Farmacia, Universidad de Concepción, Concepción, Chile
- Departamento de Análisis Instrumental, Facultad de Farmacia, Universidad de Concepción, Concepción, Chile
- Machine Learning Applied in Biomedicine (MLAB), Concepción, Chile
| | - Andrés Rodríguez
- Machine Learning Applied in Biomedicine (MLAB), Concepción, Chile
- Departamento de Ciencias Básicas, Facultad de Ciencias, Universidad del Bío-Bío, Chillán, Chile
| | - Ma. Cecilia Opazo
- Instituto de Ciencias Naturales, Facultad de Medicina Veterinaria y Agronomía, Universidad de Las Américas, Santiago, Chile
- Millennium Institute on Immunology and Immunotherapy, Santiago, Chile
| | - Claudia A. Riedel
- Millennium Institute on Immunology and Immunotherapy, Santiago, Chile
- Departamento de Ciencias Biológicas, Facultad de Ciencias de la Vida, Universidad Andrés Bello, Santiago, Chile
| | - Erica Castro
- Departamento de Obstetricia y Puericultura, Facultad de Ciencias de la Salud, Universidad de Atacama, Copiapó, Chile
| | - Alma Eriz-Salinas
- Departamento de Obstetricia y Puericultura, Facultad de Medicina, Universidad de Concepción, Concepción, Chile
| | - Javiera Appel-Rubio
- Departamento de Bioquímica Clínica e Inmunología, Facultad de Farmacia, Universidad de Concepción, Concepción, Chile
| | - Claudio Aguayo
- Departamento de Bioquímica Clínica e Inmunología, Facultad de Farmacia, Universidad de Concepción, Concepción, Chile
| | - Alicia E. Damiano
- Cátedra de Biología Celular y Molecular, Departamento de Ciencias Biológicas, Facultad de Farmacia y Bioquímica, Universidad de Buenos Aires, Buenos Aires, Argentina
- Laboratorio de Biología de la Reproducción, Instituto de Fisiología y Biofísica Bernardo Houssay (IFIBIO-Houssay)- CONICET, Universidad de Buenos Aires, Buenos Aires, Argentina
| | - Enrique Guzmán-Gutiérrez
- Departamento de Bioquímica Clínica e Inmunología, Facultad de Farmacia, Universidad de Concepción, Concepción, Chile
- Machine Learning Applied in Biomedicine (MLAB), Concepción, Chile
| | - Juan Araya
- Departamento de Análisis Instrumental, Facultad de Farmacia, Universidad de Concepción, Concepción, Chile
- Machine Learning Applied in Biomedicine (MLAB), Concepción, Chile
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Meyer R, Weisz B, Eilenberg R, Tsadok MA, Uziel M, Sivan E, Mazaki-Tovi S, Tsur A. Utilizing machine learning to predict unplanned cesarean delivery. Int J Gynaecol Obstet 2023; 161:255-263. [PMID: 36049888 DOI: 10.1002/ijgo.14433] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2022] [Revised: 06/27/2022] [Accepted: 08/17/2022] [Indexed: 11/06/2022]
Abstract
OBJECTIVE To develop a comprehensive machine learning (ML) model predicting unplanned cesarean delivery (uCD) among singleton pregnancies based on features available at admission to labor. METHODS A retrospective cohort study from a tertiary medical center. Women with singleton vertex pregnancy of 34 weeks or more admitted for vaginal delivery between March 2011 and May 2019 were included. The cohort was divided into training (80%) and validation (20%) data sets. A separate cohort between June 2019 and April 2021 served as a test data set. Features selection was performed using a Random Forest ML algorithm. RESULTS The study population included 73 667 women, of which 4125 (6.33%) underwent uCD. The final model consisted of 13 features, based on prediction importance. The XGBoost model performed best with areas under the curve for the training, validation, and test data sets of 0.874, 0.839, and 0.840, respectively. The model showed a 65% positive predictive value for uCD among women in the 100th centile group, and a 99% or more negative predictive value in the less than 50th centile group. Positive and negative predictive values remained high among subgroups with high pretest probability of uCD. CONCLUSION An ML model for the prediction of uCD provides clinically useful risk stratification that remains accurate across gestational weeks 34-42 and among clinical risk groups. The model may be clinically useful for physicians and women admitted for labor. SYNOPSIS A machine learning model predicts unplanned cesarean delivery and can inform women's individualized decision making.
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Affiliation(s)
- Raanan Meyer
- Department of Obstetrics and Gynecology, The Chaim Sheba Medical Center, Tel Hashomer, Israel.,School of Medicine, Tel Aviv University, Tel Aviv-Yafo, Israel.,The Dr. Pinchas Bornstein Talpiot Medical Leadership Program, Sheba Medical Center, Tel Hashomer, Ramat-Gan, Israel
| | - Boaz Weisz
- Department of Obstetrics and Gynecology, The Chaim Sheba Medical Center, Tel Hashomer, Israel.,School of Medicine, Tel Aviv University, Tel Aviv-Yafo, Israel.,The Dr. Pinchas Bornstein Talpiot Medical Leadership Program, Sheba Medical Center, Tel Hashomer, Ramat-Gan, Israel
| | - Roni Eilenberg
- Timna, Big Data Department, Israel Ministry of Health, Jerusalem, Israel
| | | | - Moshe Uziel
- Timna, Big Data Department, Israel Ministry of Health, Jerusalem, Israel
| | - Eyal Sivan
- Department of Obstetrics and Gynecology, The Chaim Sheba Medical Center, Tel Hashomer, Israel.,School of Medicine, Tel Aviv University, Tel Aviv-Yafo, Israel
| | - Shali Mazaki-Tovi
- Department of Obstetrics and Gynecology, The Chaim Sheba Medical Center, Tel Hashomer, Israel.,School of Medicine, Tel Aviv University, Tel Aviv-Yafo, Israel.,The Dr. Pinchas Bornstein Talpiot Medical Leadership Program, Sheba Medical Center, Tel Hashomer, Ramat-Gan, Israel
| | - Abraham Tsur
- Department of Obstetrics and Gynecology, The Chaim Sheba Medical Center, Tel Hashomer, Israel.,School of Medicine, Tel Aviv University, Tel Aviv-Yafo, Israel.,The Gertner Institute for Epidemiology and Health Policy, Tel HaShomer, Israel
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Liang H, Lu Y. A CNN-RNN unified framework for intrapartum cardiotocograph classification. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2023; 229:107300. [PMID: 36566652 DOI: 10.1016/j.cmpb.2022.107300] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/17/2021] [Revised: 11/30/2022] [Accepted: 12/03/2022] [Indexed: 06/17/2023]
Abstract
BACKGROUND AND OBJECTIVE Prenatal fetal monitoring, which can monitor the growth and health of the fetus, is very vital for pregnant women before delivery. During pregnancy, it is crucial to judge whether the fetus is abnormal, which helps obstetricians carry out early intervention to avoid fetal hypoxia and even death. At present, clinical fetal monitoring widely used fetal heart rate monitoring equipment. Fetal heart rate and uterine contraction signals obtained by fetal heart monitoring equipment are important information to evaluate fetal health status. METHODS This paper is based on 1D-CNN (One Dimension Convolutional Neural Network) and GRU (Gate Recurrent Unit). We preprocess the obtained data and enhances them, to make the proportion of number of instances in different class in the training set is same. RESULTS In model performance evaluation, standard evaluation indicators are used, such as accuracy, sensitivity, specificity, and ROC (receiver operating characteristic). Finally, the accuracy of our model in the test set is 95.15%, the sensitivity is 96.20%, and the specificity is 94.09%. CONCLUSIONS In fetal heart rate monitoring, this paper proposes a 1D-CNN and bidirectional GRU hybrid models, and the fetal heart rate and uterine contraction signals given by monitoring are used as input feature to classify the fetal health status. The results show that our approach is effective in evaluating fetal health status and can assists obstetricians in clinical decision-making. And provide a baseline for the introduction of 1D-CNN and bidirectional GRU hybrid models into the evaluation of fetal health status.
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Affiliation(s)
- Huanwen Liang
- College of Big Data and Internet, Shenzhen Technology University, Shenzhen, China; College of Applied Science, Shenzhen University, Shenzhen, China
| | - Yu Lu
- College of Big Data and Internet, Shenzhen Technology University, Shenzhen, China.
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Aeberhard JL, Radan AP, Delgado-Gonzalo R, Strahm KM, Sigurthorsdottir HB, Schneider S, Surbek D. Artificial intelligence and machine learning in cardiotocography: A scoping review. Eur J Obstet Gynecol Reprod Biol 2023; 281:54-62. [PMID: 36535071 DOI: 10.1016/j.ejogrb.2022.12.008] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2022] [Revised: 10/19/2022] [Accepted: 12/05/2022] [Indexed: 12/13/2022]
Abstract
INTRODUCTION Artificial intelligence (AI) is gaining more interest in the field of medicine due to its capacity to learn patterns directly from data. This becomes interesting for the field of cardiotocography (CTG) interpretation, since it promises to remove existing biases and improve the well-known issues of inter- and intra-observer variability. MATERIAL AND METHODS The objective of this study was to map current knowledge in AI-assisted interpretation of CTG tracings and thus, to present different approaches with their strengths, gaps, and limitations. The search was performed on Ovid Medline and PubMed databases. The Preferred Reporting Items for Systematic Reviews and meta-Analysis for Scoping Reviews (PRISMA-ScR) guidelines were followed. RESULTS We summarized 40 different studies investigating at least one algorithm or system to classify CTG tracings. In addition, the Oxford Sonicaid system is presented because of its wide use in clinical practice. CONCLUSIONS There are several promising approaches in this area, but none of them has gained big acceptance in clinical practice. Further investigation and refinement of the algorithms and features are needed to achieve a validated decision-support system. For this purpose, larger quantities of curated and labeled data may be necessary.
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Affiliation(s)
| | - Anda-Petronela Radan
- Department of Obstetrics and Feto-maternal Medicine, University Hospital of Bern, Switzerland
| | | | - Karin Maya Strahm
- Department of Obstetrics and Feto-maternal Medicine, University Hospital of Bern, Switzerland
| | | | - Sophie Schneider
- Department of Obstetrics and Feto-maternal Medicine, University Hospital of Bern, Switzerland
| | - Daniel Surbek
- Department of Obstetrics and Feto-maternal Medicine, University Hospital of Bern, Switzerland
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Early Detection and Diagnosis of Chronic Kidney Disease Based on Selected Predominant Features. JOURNAL OF HEALTHCARE ENGINEERING 2023; 2023:3553216. [PMID: 36756136 PMCID: PMC9902122 DOI: 10.1155/2023/3553216] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/06/2022] [Revised: 04/19/2022] [Accepted: 11/25/2022] [Indexed: 02/03/2023]
Abstract
In numerous perilous cases, a quick medical decision is needed for the early detection of chronic diseases to avoid austere consequences that may be fatal. Chronic kidney disease (CKD) is a prevalent disease that presents a variety of challenges, including soaring costs for intervention, urgency, and, more importantly, difficulty in early detection of the disease. The current study carries out a prediction-based method that helps in detecting and diagnosing CKD patients which enables a fast and accurate decision-making process at the early stage. A combination of preprocessing and feature selection methods was developed; additionally, several prediction models, such as K-nearest neighbor (KNN), support vector machine (SVM), random forest (RF), and bagging, were trained based on the processed dataset. The performance evaluation shows higher reliability of all models in terms of accuracy, precision, sensitivity, F-measure, specificity, and area under the curve (AUC) score. Specifically, KNN outperformed with an accuracy of 99.50%, sensitivity of 99.2%, precision of 100%, specificity of 98.7%, and F-measure and AUC score of 99.6%. The experimental results of KNN show the best fitted model compared to the existing state-of-the-art methods. Moreover, the reduced feature set proves that just a few clinical tests are enough to detect CKD, resulting in diagnosis cost reduction.
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Pirnar Ž, Jager F, Geršak K. Characterization and separation of preterm and term spontaneous, induced, and cesarean EHG records. Comput Biol Med 2022; 151:106238. [PMID: 36343404 DOI: 10.1016/j.compbiomed.2022.106238] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2022] [Revised: 09/30/2022] [Accepted: 10/22/2022] [Indexed: 12/27/2022]
Abstract
To improve the understanding of the underlying physiological processes that lead to preterm birth, and different term delivery modes, we quantitatively characterized and assessed the separability of the sets of early (23rd week) and later (31st week) recorded, preterm and term spontaneous, induced, cesarean, and induced-cesarean electrohysterogram (EHG) records using several of the most widely used non-linear features extracted from the EHG signals. Linearly modeled temporal trends of the means of the median frequencies (MFs), and of the means of the peak amplitudes (PAs) of the normalized power spectra of the EHG signals, along pregnancy (from early to later recorded records), derived from a variety of frequency bands, revealed that for the preterm group of records, in comparison to all other term delivery groups, the frequency spectrum of the frequency band B0L (0.08-0.3 Hz) shifts toward higher frequencies, and that the spectrum of the newly identified frequency band B0L' (0.125-0.575 Hz), which approximately matches the Fast Wave Low band, becomes stronger. The most promising features to separate between the later preterm group and all other later term delivery groups appear to be MF (p=1.1⋅10-5) in the band B0L of the horizontal signal S3, and PA (p=2.4⋅10-8) in the band B0L' (S3). Moreover, the PA in the band B0L' (S3) showed the highest power to individually separate between the later preterm group and any other later term delivery group. Furthermore, the results suggest that in preterm pregnancies the resting maternal heart rate decreases between the 23rd and 31st week of gestation.
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Affiliation(s)
- Žiga Pirnar
- Faculty of Computer and Information Science, University of Ljubljana, Večna pot 113, 1000 Ljubljana, Slovenia
| | - Franc Jager
- Faculty of Computer and Information Science, University of Ljubljana, Večna pot 113, 1000 Ljubljana, Slovenia.
| | - Ksenija Geršak
- Faculty of Medicine, University of Ljubljana, Vrazov trg 2, 1000 Ljubljana, Slovenia; University Medical Center Ljubljana, Zaloška cesta 2, 1000 Ljubljana, Slovenia
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Xiao Y, Lu Y, Liu M, Zeng R, Bai J. A deep feature fusion network for fetal state assessment. Front Physiol 2022; 13:969052. [PMID: 36531165 PMCID: PMC9748093 DOI: 10.3389/fphys.2022.969052] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2022] [Accepted: 11/15/2022] [Indexed: 09/05/2023] Open
Abstract
CTG (cardiotocography) has consistently been used to diagnose fetal hypoxia. It is susceptible to identifying the average fetal acid-base balance but lacks specificity in recognizing prenatal acidosis and neurological impairment. CTG plays a vital role in intrapartum fetal state assessment, which can prevent severe organ damage if fetal hypoxia is detected earlier. In this paper, we propose a novel deep feature fusion network (DFFN) for fetal state assessment. First, we extract spatial and temporal information from the fetal heart rate (FHR) signal using a multiscale CNN-BiLSTM network, increasing the features' diversity. Second, the multiscale CNN-BiLSM network and frequently used features are integrated into the deep learning model. The proposed DFFN model combines different features to improve classification accuracy. The multiscale convolutional kernels can identify specific essential information and consider signal's temporal information. The proposed method achieves 61.97%, 73.82%, and 66.93% of sensitivity, specificity, and quality index, respectively, on the public CTU-UHB database. The proposed method achieves the highest QI on the private database, verifying the proposed method's effectiveness and generalization. The proposed DFFN combines the advantages of feature engineering and deep learning models and achieves competitive accuracy in fetal state assessment compared with related works.
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Affiliation(s)
- Yahui Xiao
- Guangdong Provincial Key Laboratory of Traditional Chinese Medicine Informatization, Department of Electronic Engineering, College of Information Science and Technology, Jinan University, Guangzhou, China
| | - Yaosheng Lu
- Guangdong Provincial Key Laboratory of Traditional Chinese Medicine Informatization, Department of Electronic Engineering, College of Information Science and Technology, Jinan University, Guangzhou, China
| | - Mujun Liu
- College of Science and Engineering Jinan University, Guangzhou, China
| | - Rongdan Zeng
- Guangdong Provincial Key Laboratory of Traditional Chinese Medicine Informatization, Department of Electronic Engineering, College of Information Science and Technology, Jinan University, Guangzhou, China
| | - Jieyun Bai
- Guangdong Provincial Key Laboratory of Traditional Chinese Medicine Informatization, Department of Electronic Engineering, College of Information Science and Technology, Jinan University, Guangzhou, China
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13
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Al-yousif S, Najm IA, Talab HS, Hasan Al Qahtani N, Alfiras M, Al-Rawi OYM, Subhi Al-Dayyeni W, Amer Ahmed Alrawi A, Jabbar Mnati M, Jarrar M, Ghabban F, Al-Shareefi NA, Musa Jaber M, H. Saleh A, Md Tahir N, Najim HT, Taher M. Intrapartum cardiotocography trace pattern pre-processing, features extraction and fetal health condition diagnoses based on RCOG guideline. PeerJ Comput Sci 2022; 8:e1050. [PMID: 36092005 PMCID: PMC9454876 DOI: 10.7717/peerj-cs.1050] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2021] [Accepted: 06/30/2022] [Indexed: 06/15/2023]
Abstract
CONTEXT The computerization of both fetal heart rate (FHR) and intelligent classification modeling of the cardiotocograph (CTG) is one of the approaches that are utilized in assisting obstetricians in conducting initial interpretation based on (CTG) analysis. CTG tracing interpretation is crucial for the monitoring of the fetal status during weeks into the pregnancy and childbirth. Most contemporary studies rely on computer-assisted fetal heart rate (FHR) feature extraction and CTG categorization to determine the best precise diagnosis for tracking fetal health during pregnancy. Furthermore, through the utilization of a computer-assisted fetal monitoring system, the FHR patterns can be precisely detected and categorized. OBJECTIVE The goal of this project is to create a reliable feature extraction algorithm for the FHR as well as a systematic and viable classifier for the CTG through the utilization of the MATLAB platform, all the while adhering to the recognized Royal College of Obstetricians and Gynecologists (RCOG) recommendations. METHOD The compiled CTG data from spiky artifacts were cleaned by a specifically created application and compensated for missing data using the guidelines provided by RCOG and the MATLAB toolbox after the implemented data has been processed and the FHR fundamental features have been extracted, for example, the baseline, acceleration, deceleration, and baseline variability. This is followed by the classification phase based on the MATLAB environment. Next, using the guideline provided by the RCOG, the signals patterns of CTG were classified into three categories specifically as normal, abnormal (suspicious), or pathological. Furthermore, to ensure the effectiveness of the created computerized procedure and confirm the robustness of the method, the visual interpretation performed by five obstetricians is compared with the results utilizing the computerized version for the 150 CTG signals. RESULTS The attained CTG signal categorization results revealed that there is variability, particularly a trivial dissimilarity of approximately (+/-4 and 6) beats per minute (b.p.m.). It was demonstrated that obstetricians' observations coincide with algorithms based on deceleration type and number, except for acceleration values that differ by up to (+/-4). DISCUSSION The results obtained based on CTG interpretation showed that the utilization of the computerized approach employed in infirmaries and home care services for pregnant women is indeed suitable. CONCLUSIONS The classification based on CTG that was used for the interpretation of the FHR attribute as discussed in this study is based on the RCOG guidelines. The system is evaluated and validated by experts based on their expert opinions and was compared with the CTG feature extraction and classification algorithms developed using MATLAB.
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Affiliation(s)
- Shahad Al-yousif
- Research Centre, The University of Almashreq, Baghdad, Iraq
- College of Engineering, Department of Electrical & Electronic Engineering, Gulf University, Almasnad, Kingdom of Bahrain
- Department of Medical Instrumentation Engineering Techniques, Dijlah University College, Baghdad, Iraq
| | - Ihab A. Najm
- College of Engineering, Tikrit University, Tikrit, Iraq
| | - Hossam Subhi Talab
- Children Welfare Teaching Hospital, Medical City, (MD, CABP, CAB Neonatology), Baghdad, Iraq
| | - Nourah Hasan Al Qahtani
- Department of Obstetrics and Gynecology, College of Medicine, Imam Abdulrahman Bin Faisal University, Al Dammam, Saudi Arabia
| | - M. Alfiras
- College of Engineering, Department of Electrical & Electronic Engineering, Gulf University, Almasnad, Kingdom of Bahrain
| | - Osama YM Al-Rawi
- College of Engineering, Department of Electrical & Electronic Engineering, Gulf University, Almasnad, Kingdom of Bahrain
| | | | | | - Mohannad Jabbar Mnati
- Department of Electronic Technology, Institute of Technology Baghdad, Middle Technical University, Baghdad, Iraq
| | - Mu’taman Jarrar
- College of Medicine, Imam Abdulrahman Bin Faisal University, Al Dammam, Saudi Arabia
| | - Fahad Ghabban
- Department of Information Systems College of Computer Science and Engineering, Taibah University, Al Madinah Al Munawwarah, Saudi Arabia
| | - Nael A. Al-Shareefi
- College of Biomedical Informatics, University of Information Technology and Communications (UOITC), Baghdad, Iraq
| | - Mustafa Musa Jaber
- Al-Turath University College, Department of Computer Engineering, Baghdad, Iraq
- Department of Medical Instruments Engineering Techniques, Al-Farahidi University, Baghdad, Iraq
| | | | - Nooritawati Md Tahir
- Electrical Engineering Department, College of Engineering, Universiti Teknologi MARA, Shah Alam, Malaysia
- Integrative Pharmacogenomics Institute (iPROMISE), Universiti Teknologi MARA, Shah Alam, Malaysia
- Institute of Big Data Analytics and Artificial Intelligence (IBDAAI), Universiti Teknologi MARA, Shah Alam, Malaysia
| | - Huda T. Najim
- Department of Biomedical Engineering, University of Technology, Baghdad, Iraq
| | - Mayada Taher
- Department of Laser and Optoelectronics Engineering, University of Technology, Baghdad, Iraq
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14
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Liang H, Lu Y, Liu Q, Fu X. Fully Automatic Classification of Cardiotocographic Signals with 1D-CNN and Bi-directional GRU. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2022; 2022:4590-4594. [PMID: 36086166 DOI: 10.1109/embc48229.2022.9871253] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Prenatal fetal monitoring, which can monitor the growth and health of the fetus, is vital for pregnant women before delivery. During pregnancy, it is essential to classify whether the fetus is abnormal, which helps physicians carry out early intervention to avoid fetal heart hypoxia and even death. Fetal heart rate and uterine contraction signals obtained by fetal heart monitoring equipment are essential to estimate fetal health status. In this paper, we pre-process the obtained data set and enhance them using Hermite interpolation on the abnormal classification in the samples. We use the 1D-CNN and GRU hybrid models to extract the abstract features of fetal heart rate and uterine contraction signals. Several evaluation metrics are used for evaluation, and the accuracy is 96 %, while the sensitivity is 95 %, and the specificity is 96 %. The experiments show the effectiveness of the proposed method, which can provide physicians and users with more stable, efficient, and convenient diagnosis and decision support.
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15
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Ghesquière L, Ternynck C, Sharma D, Hamoud Y, Vanspranghels R, Storme L, Houfflin-Debarge V, De Jonckheere J, Garabedian C. Heart rate markers for prediction of fetal acidosis in an experimental study on fetal sheep. Sci Rep 2022; 12:10615. [PMID: 35739219 PMCID: PMC9226053 DOI: 10.1038/s41598-022-14727-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2021] [Accepted: 06/10/2022] [Indexed: 11/09/2022] Open
Abstract
To overcome the difficulties in interpreting fetal heart rate (FHR), several tools based on the autonomic nervous system and heart rate variability (HRV) have been developed. The objective of this study was to use FHR and HRV parameters for the prediction of fetal hypoxia. It was an experimental study in the instrumented fetal sheep. Repeated umbilical cord occlusions were performed to achieve severe acidosis. Hemodynamic parameters, ECG, and blood gases were analyzed. The variables used were heart rate baseline, HRV analysis (RMSSD, SDNN, LF, HF, HFnu, Fetal Stress Index (FSI), …), and morphological analysis of decelerations. The gold standard used to classify hypoxia was the fetal arterial pH (pH < 7.10). Different multivariable statistical methods (logistic regression and decision trees) were applied for the detection of acidosis. 21 lambs were instrumented. A total of 130 pairs of FHR/fetal pH analysis were obtained of which 29 in the acidosis group and 101 in the non-acidosis group. After logistic regression model with bootstrap resampling and stepwise backward selection, only one variable was selected, FSI. The AUC of FSI alone in this model was 0.81 with a sensitivity of 0.66, specificity of 0.88, PPV of 0.61, and NPV of 0.90 considering a threshold of 68. Decision trees with CHAID and CART algorithms showed a sensitivity of 0.48 and 0.59, respectively, and a specificity of 0.94 for both. All employed methods identified HRV variables as the most predictive of acidosis. The primary variables selected automatically were those from the HRV. Supporting the use of FHRV measures for the screening of fetal acidosis during labour is interesting.
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Affiliation(s)
- Louise Ghesquière
- Univ. Lille, CHU Lille, ULR 2694-METRICS-Evaluation des technologies de santé et des pratiques médicales, 59000, Lille, France. .,Department of Obstetrics, CHU Lille, 59000, Lille, France. .,Department of Obstetrics, CHU Lille, Avenue Eugène Avinée, 59037, Lille Cedex, France.
| | - C Ternynck
- Univ. Lille, CHU Lille, ULR 2694-METRICS-Evaluation des technologies de santé et des pratiques médicales, 59000, Lille, France.,Department of Biostatistics, CHU Lille, 59000, Lille, France
| | - D Sharma
- Univ. Lille, CHU Lille, ULR 2694-METRICS-Evaluation des technologies de santé et des pratiques médicales, 59000, Lille, France.,Department of Pediatric Surgery, CHU Lille, 59000, Lille, France
| | - Y Hamoud
- Univ. Lille, CHU Lille, ULR 2694-METRICS-Evaluation des technologies de santé et des pratiques médicales, 59000, Lille, France.,Department of Obstetrics, CHU Lille, 59000, Lille, France
| | - R Vanspranghels
- Univ. Lille, CHU Lille, ULR 2694-METRICS-Evaluation des technologies de santé et des pratiques médicales, 59000, Lille, France.,Department of Obstetrics, CHU Lille, 59000, Lille, France
| | - L Storme
- Univ. Lille, CHU Lille, ULR 2694-METRICS-Evaluation des technologies de santé et des pratiques médicales, 59000, Lille, France.,Department of Neonatology, CHU Lille, 59000, Lille, France
| | - V Houfflin-Debarge
- Univ. Lille, CHU Lille, ULR 2694-METRICS-Evaluation des technologies de santé et des pratiques médicales, 59000, Lille, France.,Department of Obstetrics, CHU Lille, 59000, Lille, France
| | - J De Jonckheere
- Univ. Lille, CHU Lille, ULR 2694-METRICS-Evaluation des technologies de santé et des pratiques médicales, 59000, Lille, France.,CHU Lille, CIC-IT 1403, 59000, Lille, France
| | - C Garabedian
- Univ. Lille, CHU Lille, ULR 2694-METRICS-Evaluation des technologies de santé et des pratiques médicales, 59000, Lille, France.,Department of Obstetrics, CHU Lille, 59000, Lille, France
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16
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Bertini A, Salas R, Chabert S, Sobrevia L, Pardo F. Using Machine Learning to Predict Complications in Pregnancy: A Systematic Review. Front Bioeng Biotechnol 2022; 9:780389. [PMID: 35127665 PMCID: PMC8807522 DOI: 10.3389/fbioe.2021.780389] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2021] [Accepted: 12/10/2021] [Indexed: 12/11/2022] Open
Abstract
Introduction: Artificial intelligence is widely used in medical field, and machine learning has been increasingly used in health care, prediction, and diagnosis and as a method of determining priority. Machine learning methods have been features of several tools in the fields of obstetrics and childcare. This present review aims to summarize the machine learning techniques to predict perinatal complications.Objective: To identify the applicability and performance of machine learning methods used to identify pregnancy complications.Methods: A total of 98 articles were obtained with the keywords “machine learning,” “deep learning,” “artificial intelligence,” and accordingly as they related to perinatal complications (“complications in pregnancy,” “pregnancy complications”) from three scientific databases: PubMed, Scopus, and Web of Science. These were managed on the Mendeley platform and classified using the PRISMA method.Results: A total of 31 articles were selected after elimination according to inclusion and exclusion criteria. The features used to predict perinatal complications were primarily electronic medical records (48%), medical images (29%), and biological markers (19%), while 4% were based on other types of features, such as sensors and fetal heart rate. The main perinatal complications considered in the application of machine learning thus far are pre-eclampsia and prematurity. In the 31 studies, a total of sixteen complications were predicted. The main precision metric used is the AUC. The machine learning methods with the best results were the prediction of prematurity from medical images using the support vector machine technique, with an accuracy of 95.7%, and the prediction of neonatal mortality with the XGBoost technique, with 99.7% accuracy.Conclusion: It is important to continue promoting this area of research and promote solutions with multicenter clinical applicability through machine learning to reduce perinatal complications. This systematic review contributes significantly to the specialized literature on artificial intelligence and women’s health.
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Affiliation(s)
- Ayleen Bertini
- Metabolic Diseases Research Laboratory (MDRL), Interdisciplinary Center for Research in Territorial Health of the Aconcagua Valley (CIISTe Aconcagua), Center for Biomedical Research (CIB), Universidad de Valparaíso, Valparaiso, Chile
- PhD Program Doctorado en Ciencias e Ingeniería para La Salud, Faculty of Medicine, Universidad de Valparaíso, Valparaiso, Chile
| | - Rodrigo Salas
- School of Biomedical Engineering, Faculty of Engineering, Universidad de Valparaíso, Valparaiso, Chile
- Centro de Investigación y Desarrollo en INGeniería en Salud – CINGS, Universidad de Valparaíso, Valparaiso, Chile
- Instituto Milenio Intelligent Healthcare Engineering, Valparaíso, Chile
| | - Steren Chabert
- School of Biomedical Engineering, Faculty of Engineering, Universidad de Valparaíso, Valparaiso, Chile
- Centro de Investigación y Desarrollo en INGeniería en Salud – CINGS, Universidad de Valparaíso, Valparaiso, Chile
- Instituto Milenio Intelligent Healthcare Engineering, Valparaíso, Chile
| | - Luis Sobrevia
- Cellular and Molecular Physiology Laboratory (CMPL), Division of Obstetrics and Gynaecology, School of Medicine, Faculty of Medicine, Pontificia Universidad Católica de Chile, Santiago, Chile
- Department of Physiology, Faculty of Pharmacy, Universidad de Sevilla, Seville, Spain
- University of Queensland Centre for Clinical Research (UQCCR), Faculty of Medicine and Biomedical Sciences, University of Queensland, Herston, QLD, Australia
- Department of Pathology and Medical Biology, University of Groningen, University Medical Center Groningen, Groningen, Netherlands
- Medical School (Faculty of Medicine), São Paulo State University (UNESP), São Paulo, Brazil
- Tecnologico de Monterrey, Eutra, The Institute for Obesity Research, School of Medicine and Health Sciences, Monterrey, Mexico
| | - Fabián Pardo
- Metabolic Diseases Research Laboratory (MDRL), Interdisciplinary Center for Research in Territorial Health of the Aconcagua Valley (CIISTe Aconcagua), Center for Biomedical Research (CIB), Universidad de Valparaíso, Valparaiso, Chile
- Cellular and Molecular Physiology Laboratory (CMPL), Division of Obstetrics and Gynaecology, School of Medicine, Faculty of Medicine, Pontificia Universidad Católica de Chile, Santiago, Chile
- School of Medicine, Campus San Felipe, Faculty of Medicine, Universidad de Valparaíso, San Felipe, Chile
- *Correspondence: Fabián Pardo,
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17
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Fergus P, Chalmers C, Montanez CC, Reilly D, Lisboa P, Pineles B. Modelling Segmented Cardiotocography Time-Series Signals Using One-Dimensional Convolutional Neural Networks for the Early Detection of Abnormal Birth Outcomes. IEEE TRANSACTIONS ON EMERGING TOPICS IN COMPUTATIONAL INTELLIGENCE 2021. [DOI: 10.1109/tetci.2020.3020061] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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18
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Developing a Stacked Ensemble-Based Classification Scheme to Predict Second Primary Cancers in Head and Neck Cancer Survivors. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2021; 18:ijerph182312499. [PMID: 34886225 PMCID: PMC8657249 DOI: 10.3390/ijerph182312499] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/16/2021] [Revised: 11/21/2021] [Accepted: 11/25/2021] [Indexed: 12/16/2022]
Abstract
Despite a considerable expansion in the present therapeutic repertoire for other malignancy managements, mortality from head and neck cancer (HNC) has not significantly improved in recent decades. Moreover, the second primary cancer (SPC) diagnoses increased in patients with HNC, but studies providing evidence to support SPCs prediction in HNC are lacking. Several base classifiers are integrated forming an ensemble meta-classifier using a stacked ensemble method to predict SPCs and find out relevant risk features in patients with HNC. The balanced accuracy and area under the curve (AUC) are over 0.761 and 0.847, with an approximately 2% and 3% increase, respectively, compared to the best individual base classifier. Our study found the top six ensemble risk features, such as body mass index, primary site of HNC, clinical nodal (N) status, primary site surgical margins, sex, and pathologic nodal (N) status. This will help clinicians screen HNC survivors before SPCs occur.
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19
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Ponsiglione AM, Cosentino C, Cesarelli G, Amato F, Romano M. A Comprehensive Review of Techniques for Processing and Analyzing Fetal Heart Rate Signals. SENSORS (BASEL, SWITZERLAND) 2021; 21:6136. [PMID: 34577342 PMCID: PMC8469481 DOI: 10.3390/s21186136] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/28/2021] [Revised: 09/04/2021] [Accepted: 09/10/2021] [Indexed: 02/07/2023]
Abstract
The availability of standardized guidelines regarding the use of electronic fetal monitoring (EFM) in clinical practice has not effectively helped to solve the main drawbacks of fetal heart rate (FHR) surveillance methodology, which still presents inter- and intra-observer variability as well as uncertainty in the classification of unreassuring or risky FHR recordings. Given the clinical relevance of the interpretation of FHR traces as well as the role of FHR as a marker of fetal wellbeing autonomous nervous system development, many different approaches for computerized processing and analysis of FHR patterns have been proposed in the literature. The objective of this review is to describe the techniques, methodologies, and algorithms proposed in this field so far, reporting their main achievements and discussing the value they brought to the scientific and clinical community. The review explores the following two main approaches to the processing and analysis of FHR signals: traditional (or linear) methodologies, namely, time and frequency domain analysis, and less conventional (or nonlinear) techniques. In this scenario, the emerging role and the opportunities offered by Artificial Intelligence tools, representing the future direction of EFM, are also discussed with a specific focus on the use of Artificial Neural Networks, whose application to the analysis of accelerations in FHR signals is also examined in a case study conducted by the authors.
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Affiliation(s)
- Alfonso Maria Ponsiglione
- Department of Electrical Engineering and Information Technology (DIETI), University of Naples Federico II, Via Claudio 21, 80125 Naples, Italy; (A.M.P.); (F.A.)
| | - Carlo Cosentino
- Department of Experimental and Clinical Medicine ‘Gaetano Salvatore’, University Magna Graecia of Catanzaro, Viale Tommaso Campanella 185, 88100 Catanzaro, Italy;
| | - Giuseppe Cesarelli
- Department of Chemical, Materials and Production Engineering (DICMaPI), University of Naples Federico II, Piazzale Tecchio 80, 80125 Naples, Italy;
| | - Francesco Amato
- Department of Electrical Engineering and Information Technology (DIETI), University of Naples Federico II, Via Claudio 21, 80125 Naples, Italy; (A.M.P.); (F.A.)
| | - Maria Romano
- Department of Electrical Engineering and Information Technology (DIETI), University of Naples Federico II, Via Claudio 21, 80125 Naples, Italy; (A.M.P.); (F.A.)
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20
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Ullah Z, Saleem F, Jamjoom M, Fakieh B. Reliable Prediction Models Based on Enriched Data for Identifying the Mode of Childbirth by Using Machine Learning Methods: Development Study. J Med Internet Res 2021; 23:e28856. [PMID: 34085938 PMCID: PMC8214183 DOI: 10.2196/28856] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2021] [Revised: 03/30/2021] [Accepted: 04/30/2021] [Indexed: 11/30/2022] Open
Abstract
Background The use of artificial intelligence has revolutionized every area of life such as business and trade, social and electronic media, education and learning, manufacturing industries, medicine and sciences, and every other sector. The new reforms and advanced technologies of artificial intelligence have enabled data analysts to transmute raw data generated by these sectors into meaningful insights for an effective decision-making process. Health care is one of the integral sectors where a large amount of data is generated daily, and making effective decisions based on these data is therefore a challenge. In this study, cases related to childbirth either by the traditional method of vaginal delivery or cesarean delivery were investigated. Cesarean delivery is performed to save both the mother and the fetus when complications related to vaginal birth arise. Objective The aim of this study was to develop reliable prediction models for a maternity care decision support system to predict the mode of delivery before childbirth. Methods This study was conducted in 2 parts for identifying the mode of childbirth: first, the existing data set was enriched and second, previous medical records about the mode of delivery were investigated using machine learning algorithms and by extracting meaningful insights from unseen cases. Several prediction models were trained to achieve this objective, such as decision tree, random forest, AdaBoostM1, bagging, and k-nearest neighbor, based on original and enriched data sets. Results The prediction models based on enriched data performed well in terms of accuracy, sensitivity, specificity, F-measure, and receiver operating characteristic curves in the outcomes. Specifically, the accuracy of k-nearest neighbor was 84.38%, that of bagging was 83.75%, that of random forest was 83.13%, that of decision tree was 81.25%, and that of AdaBoostM1 was 80.63%. Enrichment of the data set had a good impact on improving the accuracy of the prediction process, which supports maternity care practitioners in making decisions in critical cases. Conclusions Our study shows that enriching the data set improves the accuracy of the prediction process, thereby supporting maternity care practitioners in making informed decisions in critical cases. The enriched data set used in this study yields good results, but this data set can become even better if the records are increased with real clinical data.
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Affiliation(s)
- Zahid Ullah
- Department of Information Systems, Faculty of Computing and Information Technology, King Abdulaziz University, Jeddah, Saudi Arabia
| | - Farrukh Saleem
- Department of Information Systems, Faculty of Computing and Information Technology, King Abdulaziz University, Jeddah, Saudi Arabia
| | - Mona Jamjoom
- Department of Computer Sciences, College of Computer and Information Sciences, Princess Nourah Bint Abdulrahman University, Riyadh, Saudi Arabia
| | - Bahjat Fakieh
- Department of Information Systems, Faculty of Computing and Information Technology, King Abdulaziz University, Jeddah, Saudi Arabia
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21
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Delanerolle G, Yang X, Shetty S, Raymont V, Shetty A, Phiri P, Hapangama DK, Tempest N, Majumder K, Shi JQ. Artificial intelligence: A rapid case for advancement in the personalization of Gynaecology/Obstetric and Mental Health care. ACTA ACUST UNITED AC 2021; 17:17455065211018111. [PMID: 33990172 PMCID: PMC8127586 DOI: 10.1177/17455065211018111] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
To evaluate and holistically treat the mental health sequelae and potential psychiatric comorbidities associated with obstetric and gynaecological conditions, it is important to optimize patient care, ensure efficient use of limited resources and improve health-economic models. Artificial intelligence applications could assist in achieving the above. The World Health Organization and global healthcare systems have already recognized the use of artificial intelligence technologies to address 'system gaps' and automate some of the more cumbersome tasks to optimize clinical services and reduce health inequalities. Currently, both mental health and obstetric and gynaecological services independently use artificial intelligence applications. Thus, suitable solutions are shared between mental health and obstetric and gynaecological clinical practices, independent of one another. Although, to address complexities with some patients who may have often interchanging sequelae with mental health and obstetric and gynaecological illnesses, 'holistically' developed artificial intelligence applications could be useful. Therefore, we present a rapid review to understand the currently available artificial intelligence applications and research into multi-morbid conditions, including clinical trial-based validations. Most artificial intelligence applications are intrinsically data-driven tools, and their validation in healthcare can be challenging as they require large-scale clinical trials. Furthermore, most artificial intelligence applications use rate-limiting mock data sets, which restrict their applicability to a clinical population. Some researchers may fail to recognize the randomness in the data generating processes in clinical care from a statistical perspective with a potentially minimal representation of a population, limiting their applicability within a real-world setting. However, novel, innovative trial designs could pave the way to generate better data sets that are generalizable to the entire global population. A collaboration between artificial intelligence and statistical models could be developed and deployed with algorithmic and domain interpretability to achieve this. In addition, acquiring big data sets is vital to ensure these artificial intelligence applications provide the highest accuracy within a real-world setting, especially when used as part of a clinical diagnosis or treatment.
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Affiliation(s)
| | - Xuzhi Yang
- Southern University of Science and Technology, Shenzhen, China
| | | | | | - Ashish Shetty
- University College London, London, UK.,University College London NHS Foundation Trust, London, UK
| | - Peter Phiri
- Southern Health NHS Foundation Trust, Southampton, UK.,Primary Care, Population Sciences and Medical Education, University of Southampton, Southampton, UK
| | | | | | - Kingshuk Majumder
- University of Manchester Hospitals NHS Foundation Trust, Manchester, UK
| | - Jian Qing Shi
- Southern University of Science and Technology, Shenzhen, China.,The Alan Turing Institute, London, UK
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22
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Pai VV, Pai RB. Artificial intelligence in dermatology and healthcare: An overview. Indian J Dermatol Venereol Leprol 2021; 87:457-467. [PMID: 34114421 DOI: 10.25259/ijdvl_518_19] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2019] [Accepted: 12/01/2020] [Indexed: 12/15/2022]
Abstract
Many aspects of our life are affected by technology. One of the most discussed advancements of modern technologies is artificial intelligence. It involves computational methods which in some way mimic the human thought process. Just like other branches, the medical field also has come under the ambit of artificial intelligence. Almost every field in medicine has been touched by its effect in one way or the other. Prominent among them are medical diagnosis, medical statistics, robotics, and human biology. Medical imaging is one of the foremost specialties with artificial intelligence applications, wherein deep learning methods like artificial neural networks are commonly used. artificial intelligence application in dermatology was initially restricted to the analysis of melanoma and pigmentary skin lesions, has now expanded and covers many dermatoses. Though the applications of artificial intelligence are ever increasing, large data requirements, interpretation of data and ethical concerns are some of its limitations in the present day.
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Affiliation(s)
| | - Rohini Bhat Pai
- Department of Anaesthesiology, Goa Medical College, Bambolim, Goa, India
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Al-yousif S, Jaenul A, Al-Dayyeni W, Alamoodi A, Najm IA, Md Tahir N, Alrawi AAA, Cömert Z, Al-shareefi NA, Saleh AH. A systematic review of automated pre-processing, feature extraction and classification of cardiotocography. PeerJ Comput Sci 2021; 7:e452. [PMID: 33987454 PMCID: PMC8093951 DOI: 10.7717/peerj-cs.452] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2020] [Accepted: 03/01/2021] [Indexed: 05/27/2023]
Abstract
CONTEXT The interpretations of cardiotocography (CTG) tracings are indeed vital to monitor fetal well-being both during pregnancy and childbirth. Currently, many studies are focusing on feature extraction and CTG classification using computer vision approach in determining the most accurate diagnosis as well as monitoring the fetal well-being during pregnancy. Additionally, a fetal monitoring system would be able to perform detection and precise quantification of fetal heart rate patterns. OBJECTIVE This study aimed to perform a systematic review to describe the achievements made by the researchers, summarizing findings that have been found by previous researchers in feature extraction and CTG classification, to determine criteria and evaluation methods to the taxonomies of the proposed literature in the CTG field and to distinguish aspects from relevant research in the field of CTG. METHODS Article search was done systematically using three databases: IEEE Xplore digital library, Science Direct, and Web of Science over a period of 5 years. The literature in the medical sciences and engineering was included in the search selection to provide a broader understanding for researchers. RESULTS After screening 372 articles, and based on our protocol of exclusion and inclusion criteria, for the final set of articles, 50 articles were obtained. The research literature taxonomy was divided into four stages. The first stage discussed the proposed method which presented steps and algorithms in the pre-processing stage, feature extraction and classification as well as their use in CTG (20/50 papers). The second stage included the development of a system specifically on automatic feature extraction and CTG classification (7/50 papers). The third stage consisted of reviews and survey articles on automatic feature extraction and CTG classification (3/50 papers). The last stage discussed evaluation and comparative studies to determine the best method for extracting and classifying features with comparisons based on a set of criteria (20/50 articles). DISCUSSION This study focused more on literature compared to techniques or methods. Also, this study conducts research and identification of various types of datasets used in surveys from publicly available, private, and commercial datasets. To analyze the results, researchers evaluated independent datasets using different techniques. CONCLUSIONS This systematic review contributes to understand and have insight into the relevant research in the field of CTG by surveying and classifying pertinent research efforts. This review will help to address the current research opportunities, problems and challenges, motivations, recommendations related to feature extraction and CTG classification, as well as the measurement of various performance and various data sets used by other researchers.
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Affiliation(s)
- Shahad Al-yousif
- Department of Medical Instrumentations Engineering Techniques, Dijlah University, Baghdad, Iraq
- Faculty of Information Science & Engineering, Management and Science University, Shah Alam, Selangoor, Malaysia
| | - Ariep Jaenul
- Department of Electrical Engineering, Faculty of Engineering and Computer Science, Jakarta Global University, Jakarta, Indonesia
| | - Wisam Al-Dayyeni
- Department of Medical Instrumentations Engineering Techniques, Dijlah University, Baghdad, Iraq
| | - Ah Alamoodi
- Department of Computing, Universiti Pendidikan Sultan Idris, Tanjong Malim, Perak, Malaysia
| | - IA Najm
- Faculty of Engineering, Tikrit University, Tikrit, Iraq
| | - Nooritawati Md Tahir
- Faculty of Electrical Engineering, Universiti Teknologi MARA (UiTM), Shah Alam, Selangor, Malaysia
| | - Ali Amer Ahmed Alrawi
- Training Directorate, Ministry of Science and Technology, Baghdad, Aljadireyah, Iraq
| | - Zafer Cömert
- Department of Software Engineering, Samsun University, Samsun, Turkey
| | - Nael A. Al-shareefi
- College of Biomedical Informatics, University of Information Technology and Communications (UOITC), Baghdad, Almansoor, Iraq
| | - Abbadullah H. Saleh
- Department Computer Engineering, Karabük University,, Karabük, Karabük, Turkey
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Davidson L, Boland MR. Towards deep phenotyping pregnancy: a systematic review on artificial intelligence and machine learning methods to improve pregnancy outcomes. Brief Bioinform 2021; 22:6065792. [PMID: 33406530 PMCID: PMC8424395 DOI: 10.1093/bib/bbaa369] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2020] [Revised: 10/13/2020] [Accepted: 11/18/2020] [Indexed: 12/16/2022] Open
Abstract
Objective Development of novel informatics methods focused on improving pregnancy outcomes remains an active area of research. The purpose of this study is to systematically review the ways that artificial intelligence (AI) and machine learning (ML), including deep learning (DL), methodologies can inform patient care during pregnancy and improve outcomes. Materials and methods We searched English articles on EMBASE, PubMed and SCOPUS. Search terms included ML, AI, pregnancy and informatics. We included research articles and book chapters, excluding conference papers, editorials and notes. Results We identified 127 distinct studies from our queries that were relevant to our topic and included in the review. We found that supervised learning methods were more popular (n = 69) than unsupervised methods (n = 9). Popular methods included support vector machines (n = 30), artificial neural networks (n = 22), regression analysis (n = 17) and random forests (n = 16). Methods such as DL are beginning to gain traction (n = 13). Common areas within the pregnancy domain where AI and ML methods were used the most include prenatal care (e.g. fetal anomalies, placental functioning) (n = 73); perinatal care, birth and delivery (n = 20); and preterm birth (n = 13). Efforts to translate AI into clinical care include clinical decision support systems (n = 24) and mobile health applications (n = 9). Conclusions Overall, we found that ML and AI methods are being employed to optimize pregnancy outcomes, including modern DL methods (n = 13). Future research should focus on less-studied pregnancy domain areas, including postnatal and postpartum care (n = 2). Also, more work on clinical adoption of AI methods and the ethical implications of such adoption is needed.
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Affiliation(s)
- Lena Davidson
- MS degree at College of St. Scholastica, Duluth, MN, USA
| | - Mary Regina Boland
- Department of Biostatistics, Epidemiology, and Informatics at the University of Pennsylvania
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Ricciardi C, Improta G, Amato F, Cesarelli G, Romano M. Classifying the type of delivery from cardiotocographic signals: A machine learning approach. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2020; 196:105712. [PMID: 32877811 DOI: 10.1016/j.cmpb.2020.105712] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2020] [Accepted: 08/12/2020] [Indexed: 06/11/2023]
Abstract
BACKGROUND AND OBJECTIVE Cardiotocography (CTG) is the most employed methodology to monitor the foetus in the prenatal phase. Since the evaluation of CTG is often visual, and hence qualitative and too subjective, some automated methods have been introduced for its assessment. METHODS In this paper, a custom-made software is exploited to extract 17 features from the available CTG. A preliminary univariate statistical analysis is performed; then, five machine learning algorithms, exploiting ensemble learning, were implemented (J48, Random Forests (RF), Ada-boosting of decision tree (ADA-B), Gradient Boosting and Decorate) through Knime analytics platform to classify patients according to their delivery: vaginal or caesarean section. The dataset is composed by 370 signals collected between 2000 and 2009 in both public and private hospitals. The performance of the algorithms was evaluated using 10 folds cross validation with different evaluation metrics: accuracy, precision, sensitivity, specificity, area under the curve receiver operating characteristic (AUCROC). RESULTS While only two features were significantly different (gestation week and power expressed by the high frequency band of FHR power spectrum), from the statistical point of view, machine learning results were great. The RF obtained the best results: accuracy (91.1%), sensitivity (90.0%) and AUCROC (96.7%). The ADA-B achieved the highest precision (92.6%) and specificity (93.1%). As expected, the lowest scores were obtained by J48 that was the base classifier employed in all the others empowered implementations. Excluding the J48 results, the AUCROC of all the algorithms was greater than 94.9%. CONCLUSION In the light of the obtained results, that are greater than those ones found in the literature from comparable researches, it can be stated that the machine learning approach can actually help the physicians in their decision process when evaluating the foetal well-being.
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Affiliation(s)
- C Ricciardi
- Department of Advanced Biomedical Sciences, University Hospital of Naples Federico II, Naples, Italy
| | - G Improta
- Department of Public Health, University Hospital of Naples Federico II, Naples, Italy; Centro Interdipartimentale di Ricerca in Management Sanitario e Innovazione in Sanità (CIRMIS)
| | - F Amato
- Centro Interdipartimentale di Ricerca in Management Sanitario e Innovazione in Sanità (CIRMIS); Department of Electrical Engineering and Information Technology, DIETI, University of Naples Federico II, Naples 80125, Italy.
| | - G Cesarelli
- Department of Chemical, Materials and Production Engineering, University of Naples "Federico II", Naples, Italy; Istituto Italiano di Tecnologia, Naples, Italy
| | - M Romano
- Department of Experimental and Clinical Medicine (DMSC), University "Magna Graecia" of Catanzaro, Italy
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Real-time data analysis using a machine learning model significantly improves prediction of successful vaginal deliveries. Am J Obstet Gynecol 2020; 223:437.e1-437.e15. [PMID: 32434000 DOI: 10.1016/j.ajog.2020.05.025] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2020] [Revised: 04/28/2020] [Accepted: 05/12/2020] [Indexed: 11/21/2022]
Abstract
BACKGROUND The process of childbirth is one of the most crucial events in the future health and development of the offspring. The vulnerability of parturients and fetuses during the delivery process led to the development of intrapartum monitoring methods and to the emergence of alternative methods of delivery. However, current monitoring methods fail to accurately discriminate between cases in which intervention is unnecessary, partly contributing to the high rates of cesarean deliveries worldwide. Machine learning methods are applied in various medical fields to create personalized prediction models. These methods are used to analyze abundant, complex data with intricate associations to aid in decision making. Initial attempts to predict vaginal delivery vs cesarean deliveries using machine learning tools did not utilize the vast amount of data recorded during labor. The data recorded during labor represent the dynamic process of labor and therefore may be invaluable for dynamic prediction of vaginal delivery. OBJECTIVE We aimed to create a personalized machine learning-based prediction model to predict successful vaginal deliveries using real-time data acquired during the first stage of labor. STUDY DESIGN Electronic medical records of labor occurring during a 12-year period in a tertiary referral center were explored and labeled. Four different models were created using input from multiple maternal and fetal parameters. Initial risk assessments for vaginal delivery were calculated using data available at the time of admission to the delivery unit, followed by models incorporating cervical examination data and fetal heart rate data, and finally, a model that integrates additional data available during the first stage of labor was created. RESULTS A total of 94,480 cases in which a trial of labor was attempted were identified. Based on approximately 180 million data points from the first stage of labor, machine learning models were developed to predict successful vaginal deliveries. A model using data available at the time of admission to the delivery unit yielded an area under the curve of 0.817 (95% confidence interval, 0.811-0.823). Models that used real-time data increased prediction accuracy. A model that includes real-time cervical examination data had an initial area under the curve of 0.819 (95% confidence interval, 0.813-0.825) at first examination, which increased to an area under the curve of 0.917 (95% confidence interval, 0.913-0.921) by the end of the first stage. Adding the real-time fetal heart monitor data provided an area under the curve of 0.824 (95% confidence interval, 0.818-0.830) at first examination, which increased to an area under the curve of 0.928 (95% confidence interval, 0.924-0.932) by the end of the first stage. Finally, adding additional real-time data increased the area under the curve initially to 0.833 (95% confidence interval, 0.827-0.838) at the first cervical examination and up to 0.932 (95% confidence interval, 0.928-0.935) by the end of the first stage. CONCLUSION Real-time data acquired throughout the process of labor significantly increased the prediction accuracy for vaginal delivery using machine learning models. These models enable translation and quantification of the data gathered in the delivery unit into a clinical tool that yields a reliable personalized risk score and helps avoid unnecessary interventions.
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Paul R, Schabath M, Gillies R, Hall L, Goldgof D. Convolutional Neural Network ensembles for accurate lung nodule malignancy prediction 2 years in the future. Comput Biol Med 2020; 122:103882. [PMID: 32658721 DOI: 10.1016/j.compbiomed.2020.103882] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2020] [Revised: 06/10/2020] [Accepted: 06/22/2020] [Indexed: 01/03/2023]
Abstract
Convolutional Neural Networks (CNNs) have been utilized for to distinguish between benign lung nodules and those that will become malignant. The objective of this study was to use an ensemble of CNNs to predict which baseline nodules would be diagnosed as lung cancer in a second follow up screening after more than one year. Low-dose helical computed tomography images and data were utilized from the National Lung Screening Trial (NLST). The malignant nodules and nodule positive controls were divided into training and test cohorts. T0 nodules were used to predict lung cancer incidence at T1 or T2. To increase the sample size, image augmentation was performed using rotations, flipping, and elastic deformation. Three CNN architectures were designed for malignancy prediction, and each architecture was trained using seven different seeds to create the initial weights. This enabled variability in the CNN models which were combined to generate a robust, more accurate ensemble model. Augmenting images using only rotation and flipping and training with images from T0 yielded the best accuracy to predict lung cancer incidence at T2 from a separate test cohort (Accuracy = 90.29%; AUC = 0.96) based on an ensemble 21 models. Images augmented by rotation and flipping enabled effective learning by increasing the relatively small sample size. Ensemble learning with deep neural networks is a compelling approach that accurately predicted lung cancer incidence at the second screening after the baseline screen mostly 2 years later.
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Affiliation(s)
- Rahul Paul
- Department of Computer Science & Engineering, University of South Florida, Tampa, FL, USA.
| | - Matthew Schabath
- Department of Cancer Epidemiology, H. L. Moffitt Cancer Center & Research Institute, Tampa, FL, USA
| | - Robert Gillies
- Department of Cancer Imaging and Metabolism, H. L. Moffitt Cancer Center & Research Institute, Tampa, FL, USA
| | - Lawrence Hall
- Department of Computer Science & Engineering, University of South Florida, Tampa, FL, USA
| | - Dmitry Goldgof
- Department of Computer Science & Engineering, University of South Florida, Tampa, FL, USA
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Independent Analysis of Decelerations and Resting Periods through CEEMDAN and Spectral-Based Feature Extraction Improves Cardiotocographic Assessment. APPLIED SCIENCES-BASEL 2019. [DOI: 10.3390/app9245421] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
Fetal monitoring is commonly based on the joint recording of the fetal heart rate (FHR) and uterine contraction signals obtained with a cardiotocograph (CTG). Unfortunately, CTG analysis is difficult, and the interpretation problems are mainly associated with the analysis of FHR decelerations. From that perspective, several approaches have been proposed to improve its analysis; however, the results obtained are not satisfactory enough for their implementation in clinical practice. Current clinical research indicates that a correct CTG assessment requires a good understanding of the fetal compensatory mechanisms. In previous works, we have shown that the complete ensemble empirical mode decomposition with adaptive noise, in combination with time-varying autoregressive modeling, may be useful for the analysis of those characteristics. In this work, based on this methodology, we propose to analyze the FHR deceleration episodes separately. The main hypothesis is that the proposed feature extraction strategy applied separately to the complete signal, deceleration episodes, and resting periods (between contractions), improves the CTG classification performance compared with the analysis of only the complete signal. Results reveal that by considering the complete signal, the classification performance achieved 81.7% quality. Then, including information extracted from resting periods, it improved to 83.2%.
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Saleem S, Naqvi SS, Manzoor T, Saeed A, ur Rehman N, Mirza J. A Strategy for Classification of "Vaginal vs. Cesarean Section" Delivery: Bivariate Empirical Mode Decomposition of Cardiotocographic Recordings. Front Physiol 2019; 10:246. [PMID: 30941054 PMCID: PMC6433745 DOI: 10.3389/fphys.2019.00246] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2018] [Accepted: 02/25/2019] [Indexed: 11/13/2022] Open
Abstract
We propose objective and robust measures for the purpose of classification of "vaginal vs. cesarean section" delivery by investigating temporal dynamics and complex interactions between fetal heart rate (FHR) and maternal uterine contraction (UC) recordings from cardiotocographic (CTG) traces. Multivariate extension of empirical mode decomposition (EMD) yields intrinsic scales embedded in UC-FHR recordings while also retaining inter-channel (UC-FHR) coupling at multiple scales. The mode alignment property of EMD results in the matched signal decomposition, in terms of frequency content, which paves the way for the selection of robust and objective time-frequency features for the problem at hand. Specifically, instantaneous amplitude and instantaneous frequency of multivariate intrinsic mode functions are utilized to construct a class of features which capture nonlinear and nonstationary interactions from UC-FHR recordings. The proposed features are fed to a variety of modern machine learning classifiers (decision tree, support vector machine, AdaBoost) to delineate vaginal and cesarean dynamics. We evaluate the performance of different classifiers on a real world dataset by investigating the following classifying measures: sensitivity, specificity, area under the ROC curve (AUC) and mean squared error (MSE). It is observed that under the application of all proposed 40 features AdaBoost classifier provides the best accuracy of 91.8% sensitivity, 95.5% specificity, 98% AUC, and 5% MSE. To conclude, the utilization of all proposed time-frequency features as input to machine learning classifiers can benefit clinical obstetric practitioners through a robust and automatic approach for the classification of fetus dynamics.
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Affiliation(s)
- Saqib Saleem
- Department of Electrical and Computer Engineering, COMSATS University Islamabad, Sahiwal, Pakistan
| | - Syed Saud Naqvi
- Department of Electrical and Computer Engineering, COMSATS University Islamabad, Islamabad, Pakistan
| | - Tareq Manzoor
- Energy Research Center, COMSATS University Islamabad, Islamabad, Pakistan
| | - Ahmed Saeed
- School of Computing, Ulster University, Newtownabbey, United Kingdom
| | - Naveed ur Rehman
- Department of Electrical and Computer Engineering, COMSATS University Islamabad, Islamabad, Pakistan
| | - Jawad Mirza
- Department of Electrical and Computer Engineering, COMSATS University Islamabad, Islamabad, Pakistan
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Clinical intelligence: New machine learning techniques for predicting clinical drug response. Comput Biol Med 2019; 107:302-322. [PMID: 30771879 DOI: 10.1016/j.compbiomed.2018.12.017] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2018] [Revised: 12/29/2018] [Accepted: 12/31/2018] [Indexed: 12/13/2022]
Abstract
Predicting the response, or sensitivity, of a clinical drug to a specific cancer type is an important research problem. By predicting the clinical drug response correctly, clinicians are able to understand patient-to-patient differences in drug sensitivity outcomes, which in turn results in lesser time spent and lower cost associated with identifying effective drug candidates. Although technological advances in high-throughput drug screening in cells led to the generation of a substantial amount of relevant data, the analysis of such data would be a challenging task. There is a critical need for advanced machine learning (ML) algorithms to generate accurate predictions of clinical drug response. A major goal of this work is to provide advanced ML tools to data analysts, who would in turn build prediction calculators to be incorporated into intelligent clinical decision support systems. Such innovative tools could be used to enhance patient-care, among other uses. To achieve this goal, we develop new ML techniques, including a transfer learning approach coupled with or without a boosting technique. Experimental results on real clinical data pertaining to breast cancer, multiple myeloma, and triple-negative cancer patients demonstrate the effectiveness and superiority of the proposed approaches compared to baseline approaches, including existing transfer learning methods.
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Cömert Z, Kocamaz AF, Subha V. Prognostic model based on image-based time-frequency features and genetic algorithm for fetal hypoxia assessment. Comput Biol Med 2018; 99:85-97. [PMID: 29894897 DOI: 10.1016/j.compbiomed.2018.06.003] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2018] [Revised: 05/20/2018] [Accepted: 06/03/2018] [Indexed: 11/25/2022]
Abstract
Cardiotocography (CTG) is applied routinely for fetal monitoring during the perinatal period to decrease the rates of neonatal mortality and morbidity as well as unnecessary interventions. The analysis of CTG traces has become an indispensable part of present clinical practices; however, it also has serious drawbacks, such as poor specificity and variability in its interpretation. The automated CTG analysis is seen as the most promising way to overcome these disadvantages. In this study, a novel prognostic model is proposed for predicting fetal hypoxia from CTG traces based on an innovative approach called image-based time-frequency (IBTF) analysis comprised of a combination of short time Fourier transform (STFT) and gray level co-occurrence matrix (GLCM). More specifically, from a graphical representation of the fetal heart rate (FHR) signal, the spectrogram is obtained by using STFT. The spectrogram images are converted into 8-bit grayscale images, and IBTF features such as contrast, correlation, energy, and homogeneity are utilized for identifying FHR signals. At the final stage of the analysis, different subsets of the feature space are applied as the input to the least square support vector machine (LS-SVM) classifier to determine the most informative subset. For this particular purpose, the genetic algorithm is employed. The prognostic model was performed on the open-access intrapartum CTU-UHB CTG database. The sensitivity and specificity obtained using only conventional features were 57.33% and 67.24%, respectively, whereas the most effective results were achieved using a combination of conventional and IBTF features, with a sensitivity of 63.45% and a specificity of 65.88%. Conclusively, this study provides a new promising approach for feature extraction of FHR signals. In addition, the experimental outcomes showed that IBTF features provided an increase in the classification accuracy.
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Affiliation(s)
- Zafer Cömert
- Bitlis Eren University, Department of Computer Engineering, Bitlis, Turkey.
| | | | - Velappan Subha
- Manonmaniam Sundaranar University, Department of Computer Science and Engineering, India.
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