1
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A computer aided diagnosis framework for detection and classification of interstitial lung diseases using computed tomography (CT) images. APPLIED NANOSCIENCE 2022. [DOI: 10.1007/s13204-022-02512-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
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2
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Yi R, Tang L, Tian Y, Liu J, Wu Z. Identification and classification of pneumonia disease using a deep learning-based intelligent computational framework. Neural Comput Appl 2021; 35:14473-14486. [PMID: 34035563 PMCID: PMC8136378 DOI: 10.1007/s00521-021-06102-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2021] [Accepted: 05/01/2021] [Indexed: 11/28/2022]
Abstract
Pneumonia is one of the hazardous diseases that lead to life insecurity. It needs to be diagnosed at the initial stages to prevent a person from more damage and help them save their lives. Various techniques are used to identify pneumonia, including chest X-ray, blood culture, sputum culture, fluid sample, bronchoscopy, and pulse oximetry. Chest X-ray is the most widely used method to diagnose pneumonia and is considered one of the most reliable approaches. To analyse chest X-ray images accurately, an expert radiologist needs expertise and experience in the desired domain. However, human-assisted approaches have some drawbacks: expert availability, treatment cost, availability of diagnostic tools, etc. Hence, the need for an intelligent and automated system comes into place that operates on chest X-ray images and diagnoses pneumonia. The primary purpose of technology is to develop algorithms and tools that assist humans and make their lives easier. This study proposes a scalable and interpretable deep convolutional neural network (DCNN) to identify pneumonia using chest X-ray images. The proposed modified DCNN model first extracts useful features from the images and then classifies them into normal and pneumonia classes. The proposed system has been trained and tested on chest X-ray images dataset. Various performance metrics have been utilized to inspect the stability and efficacy of the proposed model. The experimental result shows that the proposed model's performance is greater compared to the other state-of-the-art methodologies used to identify pneumonia.
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Affiliation(s)
- Rong Yi
- Pulmonary and Critical Care Medicine(2), Zhuzhou Central Hospital, Zhuzhou, 412000 Hunan China
| | - Lanying Tang
- Zhuzhou Central Hospital, Neurology, Zhuzhou, 412000 Hunan China
| | - Yuqiu Tian
- Infectious Disease Zhuzhou Central Hospital, Zhuzhou, 412000 Hunan China
| | - Jie Liu
- Department of Basic Medicine, Hunan Traditional Chinese Medical College, Zhuzhou, 412012 Hunan China
| | - Zhihui Wu
- Department of Thoracic Surgery, Zhuzhou Central Hospital, Zhuzhou, 412000 Hunan China
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3
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Reamaroon N, Sjoding MW, Gryak J, Athey BD, Najarian K, Derksen H. Automated detection of acute respiratory distress syndrome from chest X-Rays using Directionality Measure and deep learning features. Comput Biol Med 2021; 134:104463. [PMID: 33993014 DOI: 10.1016/j.compbiomed.2021.104463] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Revised: 04/15/2021] [Accepted: 04/28/2021] [Indexed: 11/29/2022]
Abstract
Acute respiratory distress syndrome (ARDS) is a life-threatening lung injury with global prevalence and high mortality. Chest x-rays (CXR) are critical in the early diagnosis and treatment of ARDS. However, imaging findings may not result in proper identification of ARDS due to a number of reasons, including nonspecific appearance of radiological features, ambiguity in a patient's case due to the pathological stage of the disease, and poor inter-rater reliability from interpretations of CXRs by multiple clinical experts. This study demonstrates the potential capability of methodologies in artificial intelligence, machine learning, and image processing to overcome these challenges and quantitatively assess CXRs for presence of ARDS. We propose and describe Directionality Measure, a novel feature engineering technique used to capture the "cloud-like" appearance of diffuse alveolar damage as a mathematical concept. This study also examines the effectiveness of using an off-the-shelf, pretrained deep learning model as a feature extractor in addition to standard features extracted from the histogram and gray-level co-occurrence matrix (GLCM). Data was collected from hospitalized patients at Michigan Medicine's intensive care unit and the cohort's inclusion criteria was specifically designed to be representative of patients at risk of developing ARDS. Multiple machine learning models were used to evaluate these features with 5-fold cross-validation and the final performance was reported on a hold-out, temporally distinct test set. With AdaBoost, Directionality Measure achieved an accuracy of 78% and AUC of 74% - outperforming classification results using features from the histogram (75% accuracy and 73% AUC), GLCM (76% accuracy and 73% AUC), and ResNet-50 (77% accuracy and 73% AUC). Further experimental results demonstrated that using all feature sets in combination achieved the best overall performance, yielding an accuracy of 83% and AUC of 79% with AdaBoost. These results demonstrate the potential capability of using the proposed methodologies to complement current clinical analysis for detection of ARDS from CXRs.
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Affiliation(s)
- Narathip Reamaroon
- Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, United States.
| | - Michael W Sjoding
- Department of Internal Medicine, University of Michigan, Ann Arbor, MI, United States
| | - Jonathan Gryak
- Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, United States
| | - Brian D Athey
- Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, United States
| | - Kayvan Najarian
- Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, United States
| | - Harm Derksen
- Department of Mathematics, Northeastern University, Boston, MA, United States
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4
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Mendoza J, Pedrini H. Detection and classification of lung nodules in chest X‐ray images using deep convolutional neural networks. Comput Intell 2020. [DOI: 10.1111/coin.12241] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Julio Mendoza
- Institute of ComputingUniversity of Campinas Campinas‐SP Brazil
| | - Helio Pedrini
- Institute of ComputingUniversity of Campinas Campinas‐SP Brazil
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5
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A morphological image processing method to improve the visibility of pulmonary nodules on chest radiographic images. Biomed Signal Process Control 2020. [DOI: 10.1016/j.bspc.2019.101744] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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6
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Vajda S, Karargyris A, Jaeger S, Santosh KC, Candemir S, Xue Z, Antani S, Thoma G. Feature Selection for Automatic Tuberculosis Screening in Frontal Chest Radiographs. J Med Syst 2018; 42:146. [PMID: 29959539 DOI: 10.1007/s10916-018-0991-9] [Citation(s) in RCA: 47] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2017] [Accepted: 06/12/2018] [Indexed: 01/05/2023]
Abstract
To detect pulmonary abnormalities such as Tuberculosis (TB), an automatic analysis and classification of chest radiographs can be used as a reliable alternative to more sophisticated and technologically demanding methods (e.g. culture or sputum smear analysis). In target areas like Kenya TB is highly prevalent and often co-occurring with HIV combined with low resources and limited medical assistance. In these regions an automatic screening system can provide a cost-effective solution for a large rural population. Our completely automatic TB screening system is processing the incoming CXRs (chest X-ray) by applying image preprocessing techniques to enhance the image quality followed by an adaptive segmentation based on model selection. The delineated lung regions are described by a multitude of image features. These characteristics are than optimized by a feature selection strategy to provide the best description for the classifier, which will later decide if the analyzed image is normal or abnormal. Our goal is to find the optimal feature set from a larger pool of generic image features, -used originally for problems such as object detection, image retrieval, etc. For performance evaluation measures such as under the curve (AUC) and accuracy (ACC) were considered. Using a neural network classifier on two publicly available data collections, -namely the Montgomery and the Shenzhen dataset, we achieved the maximum area under the curve and accuracy of 0.99 and 97.03%, respectively. Further, we compared our results with existing state-of-the-art systems and to radiologists' decision.
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Affiliation(s)
| | | | - Stefan Jaeger
- National Library of Medicine, National Institutes of Health, Bethesda, MD, USA
| | - K C Santosh
- University of South Dakota, Vermillion, SD, USA
| | - Sema Candemir
- National Library of Medicine, National Institutes of Health, Bethesda, MD, USA
| | - Zhiyun Xue
- National Library of Medicine, National Institutes of Health, Bethesda, MD, USA
| | - Sameer Antani
- National Library of Medicine, National Institutes of Health, Bethesda, MD, USA
| | - George Thoma
- National Library of Medicine, National Institutes of Health, Bethesda, MD, USA
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Zaglam N, Cheriet F, Jouvet P. Computer-Aided Diagnosis for Chest Radiographs in Intensive Care. J Pediatr Intensive Care 2016; 5:113-121. [PMID: 31110895 DOI: 10.1055/s-0035-1569995] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2015] [Accepted: 10/02/2015] [Indexed: 10/22/2022] Open
Abstract
The chest radiograph is an essential tool for the diagnosis of several lung diseases in intensive care units (ICU). However, several factors make the interpretation of the chest radiograph difficult including the number of X-rays done daily in ICU, the quality of the chest radiograph, and the lack of a standardized interpretation. To overcome these limitations in the interpretation of chest radiographs, researchers have developed computer-aided diagnosis (CAD) systems. In this review, the authors report the methodology used to develop CAD systems including identification of the region of interest, analysis of these regions, and classification. Currently, only a few CAD systems for chest X-ray interpretation are commercially available. Some promising research is ongoing, but the involvement of the pediatric research community is needed for the development and validation of such CAD systems dedicated to pediatric intensive care.
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Affiliation(s)
- Nesrine Zaglam
- Department of Computer Engineering, École Polytechnique, Montréal, Quebec, Canada.,Research Center, Sainte Justine University Hospital, Montreal, Quebec, Canada
| | - Farida Cheriet
- Department of Computer Engineering, École Polytechnique, Montréal, Quebec, Canada.,Research Center, Sainte Justine University Hospital, Montreal, Quebec, Canada
| | - Philippe Jouvet
- Research Center, Sainte Justine University Hospital, Montreal, Quebec, Canada.,Pediatric Intensive Care Unit, Sainte Justine University Hospital, Montreal, Quebec, Canada
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Hogeweg L, Sánchez CI, Maduskar P, Philipsen R, Story A, Dawson R, Theron G, Dheda K, Peters-Bax L, van Ginneken B. Automatic Detection of Tuberculosis in Chest Radiographs Using a Combination of Textural, Focal, and Shape Abnormality Analysis. IEEE TRANSACTIONS ON MEDICAL IMAGING 2015; 34:2429-2442. [PMID: 25706581 DOI: 10.1109/tmi.2015.2405761] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Tuberculosis (TB) is a common disease with high mortality and morbidity rates worldwide. Automatic systems to detect TB on chest radiographs (CXRs) can improve the efficiency of diagnostic algorithms for pulmonary TB. The diverse manifestation of TB on CXRs from different populations requires a system that can be adapted to deal with different types of abnormalities. A computer aided detection (CAD) system was developed which combines several subscores of supervised subsystems detecting textural, shape, and focal abnormalities into one TB score. A general framework was developed to combine an arbitrary number of subscores: subscores were normalized, collected in a feature vector and then combined using a supervised classifier into one combined score. The method was evaluated on two databases, both consisting of 200 digital CXRs, from: (A) Western high-risk group screening, (B) TB suspect screening in Africa. The subscores and combined score were compared to (1) an external, non-radiological, reference and (2) a radiological reference determined by a human expert. Performance was measured using Receiver Operator Characteristic (ROC) analysis. Different subscores performed best in the two databases. The combined TB score performed better than the individual subscores, except for the external reference in database B. The performances of the independent observer were slightly higher than the combined TB score. Compared to the external reference, differences in performance between the combined TB score and the independent observer were not significant in both databases. Supervised combination to compute an overall TB score allows for a necessary adaptation of the CAD system to different settings or different operational requirements.
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Rijal OM, Ebrahimian H, Noor NM, Hussin A, Yunus A, Mahayiddin AA. Application of phase congruency for discriminating some lung diseases using chest radiograph. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2015; 2015:424970. [PMID: 25918551 PMCID: PMC4397004 DOI: 10.1155/2015/424970] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/05/2014] [Revised: 10/28/2014] [Accepted: 11/05/2014] [Indexed: 11/17/2022]
Abstract
A novel procedure using phase congruency is proposed for discriminating some lung disease using chest radiograph. Phase congruency provides information about transitions between adjacent pixels. Abrupt changes of phase congruency values between pixels may suggest a possible boundary or another feature that may be used for discrimination. This property of phase congruency may have potential for deciding between disease present and disease absent where the regions of infection on the images have no obvious shape, size, or configuration. Five texture measures calculated from phase congruency and Gabor were shown to be normally distributed. This gave good indicators of discrimination errors in the form of the probability of Type I Error (δ) and the probability of Type II Error (β). However, since 1 - δ is the true positive fraction (TPF) and β is the false positive fraction (FPF), an ROC analysis was used to decide on the choice of texture measures. Given that features are normally distributed, for the discrimination between disease present and disease absent, energy, contrast, and homogeneity from phase congruency gave better results compared to those using Gabor. Similarly, for the more difficult problem of discriminating lobar pneumonia and lung cancer, entropy and homogeneity from phase congruency gave better results relative to Gabor.
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Affiliation(s)
- Omar Mohd Rijal
- Institute of Mathematical Science, University of Malaya, Lembah Pantai, 50603 Kuala Lumpur, Malaysia
| | - Hossein Ebrahimian
- Institute of Mathematical Science, University of Malaya, Lembah Pantai, 50603 Kuala Lumpur, Malaysia
| | - Norliza Mohd Noor
- UTM Razak School of Engineering and Advanced Technology, Universiti Teknologi Malaysia, UTM Kuala Lumpur Campus, Jalan Semarak, 54100 Kuala Lumpur, Malaysia
| | - Amran Hussin
- Institute of Mathematical Science, University of Malaya, Lembah Pantai, 50603 Kuala Lumpur, Malaysia
| | - Ashari Yunus
- Institute of Respiratory Medicine, Kuala Lumpur Hospital, Jalan Pahang, 50590 Kuala Lumpur, Malaysia
| | - Aziah Ahmad Mahayiddin
- Institute of Respiratory Medicine, Kuala Lumpur Hospital, Jalan Pahang, 50590 Kuala Lumpur, Malaysia
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Xu Z, Bagci U, Kubler A, Luna B, Jain S, Bishai WR, Mollura DJ. Computer-aided detection and quantification of cavitary tuberculosis from CT scans. Med Phys 2014; 40:113701. [PMID: 24320475 DOI: 10.1118/1.4824979] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Abstract
PURPOSE To present a computer-aided detection tool for identifying, quantifying, and evaluating tuberculosis (TB) cavities in the infected lungs from computed tomography (CT) scans. METHODS The authors' proposed method is based on a novel shape-based automated detection algorithm on CT scans followed by a fuzzy connectedness (FC) delineation procedure. In order to assess interaction between cavities and airways, the authors first roughly identified air-filled structures (airway, cavities, esophagus, etc.) by thresholding over Hounsfield unit of CT image. Then, airway and cavity structure detection was conducted within the support vector machine classification algorithm. Once airway and cavities were detected automatically, the authors extracted airway tree using a hybrid multiscale approach based on novel affinity relations within the FC framework and segmented cavities using intensity-based FC algorithm. At final step, the authors refined airway structures within the local regions of FC with finer control. Cavity segmentation results were compared to the reference truths provided by expert radiologists and cavity formation was tracked longitudinally from serial CT scans through shape and volume information automatically determined through the authors' proposed system. Morphological evolution of the cavitary TB were analyzed accordingly with this process. Finally, the authors computed the minimum distance between cavity surface and nearby airway structures by using the linear time distance transform algorithm to explore potential role of airways in cavity formation and morphological evolution. RESULTS The proposed methodology was qualitatively and quantitatively evaluated on pulmonary CT images of rabbits experimentally infected with TB, and multiple markers such as cavity volume, cavity surface area, minimum distance from cavity surface to the nearest bronchial-tree, and longitudinal change of these markers (namely, morphological evolution of cavities) were determined precisely. While accuracy of the authors' cavity detection algorithm was 94.61%, airway detection part of the proposed methodology showed even higher performance by 99.8%. Dice similarity coefficients for cavitary segmentation experiments were found to be approximately 99.0% with respect to the reference truths provided by two expert radiologists (blinded to their evaluations). Moreover, the authors noted that volume derived from the authors' segmentation method was highly correlated with those provided by the expert radiologists (R(2) = 0.99757 and R(2) = 0.99496, p < 0.001, with respect to the observer 1 and observer 2) with an interobserver agreement of 98%. The authors quantitatively confirmed that cavity formation was positioned by the nearby bronchial-tree after exploring the respective spatial positions based on the minimum distance measurement. In terms of efficiency, the core algorithms take less than 2 min on a linux machine with 3.47 GHz CPU and 24 GB memory. CONCLUSION The authors presented a fully automatic method for cavitary TB detection, quantification, and evaluation. The performance of every step of the algorithm was qualitatively and quantitatively assessed. With the proposed method, airways and cavities were automatically detected and subsequently delineated in high accuracy with heightened efficiency. Furthermore, not only morphological information of cavities were obtained through the authors' proposed framework, but their spatial relation to airways, and longitudinal analysis was also provided to get further insight on cavity formation in tuberculosis disease. To the authors' best of knowledge, this is the first study in computerized analysis of cavitary tuberculosis from CT scans.
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Affiliation(s)
- Ziyue Xu
- Center for Infectious Disease Imaging (CIDI), Radiology and Imaging Sciences, National Institutes of Health (NIH), Bethesda, Maryland 20892
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Zaglam N, Jouvet P, Flechelles O, Emeriaud G, Cheriet F. Computer-aided diagnosis system for the Acute Respiratory Distress Syndrome from chest radiographs. Comput Biol Med 2014; 52:41-8. [PMID: 24999539 DOI: 10.1016/j.compbiomed.2014.06.006] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2014] [Revised: 05/14/2014] [Accepted: 06/12/2014] [Indexed: 01/06/2023]
Abstract
This paper presents a computer-aided diagnosis (CAD) system for the assessment of Acute Respiratory Distress Syndrome (ARDS) from chest radiographs. Our method consists in automatically extracting intercostal patches from chest radiographs belonging to the test database using a semiautomatic segmentation method of the ribs. Statistical and spectral features are computed from each patch then a method of feature transformation is applied using the Linear Discriminant Analysis (LDA). A training database of 321 patches was classified by an expert in two classes, a class of normal patches and a class of abnormal patches. Patches belonging to the test database are then classified using the SVM classifier. Finally, the rate of abnormal patches is calculated for each quadrant to decide if the chest radiograph presents an ARDS. The method has been evaluated on 90 radiographs where 53 images present ARDS. The results show a sensitivity of 90.6% at a specificity of 86.5%.
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Affiliation(s)
- Nesrine Zaglam
- Sainte-Justine Hospital Research Center, Montreal, QC, Canada H3T 1C5; The Department of Computer Engineering, Ecole Polytechnique de Montréal, Montreal, Canada H3T 1J4.
| | - Philippe Jouvet
- Sainte-Justine Hospital Research Center, Montreal, QC, Canada H3T 1C5
| | | | | | - Farida Cheriet
- Sainte-Justine Hospital Research Center, Montreal, QC, Canada H3T 1C5; The Department of Computer Engineering, Ecole Polytechnique de Montréal, Montreal, Canada H3T 1J4
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12
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Li KC, Marcovici P, Phelps A, Potter C, Tillack A, Tomich J, Tridandapani S. Digitization of medicine: how radiology can take advantage of the digital revolution. Acad Radiol 2013; 20:1479-94. [PMID: 24200474 DOI: 10.1016/j.acra.2013.09.008] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2013] [Revised: 09/07/2013] [Accepted: 09/08/2013] [Indexed: 01/10/2023]
Abstract
In the era of medical cost containment, radiologists must continually maintain their actual and perceived value to patients, payers, and referring providers. Exploitation of current and future digital technologies may be the key to defining and promoting radiology's "brand" and assure our continued relevance in providing predictive, preventive, personalized, and participatory medicine. The Association of University of Radiologists Radiology Research Alliance Digitization of Medicine Task Force was formed to explore the opportunities and challenges of the digitization of medicine that are relevant to radiologists, which include the reporting paradigm, computational biology, and imaging informatics. In addition to discussing these opportunities and challenges, we consider how change occurs in medicine, and how change may be effected in medical imaging community. This review article is a summary of the research of the task force and hopefully can be used as a stimulus for further discussions and development of action plans by radiology leaders.
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Affiliation(s)
- King C Li
- Department of Radiology, Wake Forest School of Medicine, One Medical Center Boulevard, Winston-Salem, NC 27157.
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Ganesan K, Acharya UR, Chua CK, Min LC, Abraham KT, Ng KH. Computer-Aided Breast Cancer Detection Using Mammograms: A Review. IEEE Rev Biomed Eng 2013; 6:77-98. [DOI: 10.1109/rbme.2012.2232289] [Citation(s) in RCA: 155] [Impact Index Per Article: 14.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Minami M, KojiAbe, Nakamura M. Discrimination of Pneumoconiosis X-Ray Images Scanned with a CCD Scanner. JOURNAL OF ADVANCED COMPUTATIONAL INTELLIGENCE AND INTELLIGENT INFORMATICS 2012. [DOI: 10.20965/jaciii.2012.p0069] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
This paper presents a discrimination of pneumoconiosis X-ray images obtained with a common CCD scanner. Since the current computer-aided diagnosis systems of pneumoconiosis are not practical due to high costs of usage, features for measuring abnormalities of pneumoconiosis are proposed as variables for the discrimination in this paper. In the images, abnormal levels of pneumoconiosis could depend on density distribution in each of intercostal and rib areas. Therefore, the proposed method measures the abnormalities by extracting characteristics of the distribution in the areas. Besides, using the abnormalities, the proposed method discriminates chest X-ray images into normal or abnormal cases of pneumoconiosis. Experimental results of the discriminations for 56 right-lung images have shown that the proposed abnormalities are well extracted for the discrimination.
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15
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Depeursinge A, Vargas A, Platon A, Geissbuhler A, Poletti PA, Müller H. Building a reference multimedia database for interstitial lung diseases. Comput Med Imaging Graph 2011; 36:227-38. [PMID: 21803548 DOI: 10.1016/j.compmedimag.2011.07.003] [Citation(s) in RCA: 93] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2010] [Revised: 06/13/2011] [Accepted: 07/06/2011] [Indexed: 02/05/2023]
Abstract
This paper describes the methodology used to create a multimedia collection of cases with interstitial lung diseases (ILDs) at the University Hospitals of Geneva. The dataset contains high-resolution computed tomography (HRCT) image series with three-dimensional annotated regions of pathological lung tissue along with clinical parameters from patients with pathologically proven diagnoses of ILDs. The motivations for this work is to palliate the lack of publicly available collections of ILD cases to serve as a basis for the development and evaluation of image-based computerized diagnostic aid. After 38 months of data collection, the library contains 128 patients affected with one of the 13 histological diagnoses of ILDs, 108 image series with more than 41l of annotated lung tissue patterns as well as a comprehensive set of 99 clinical parameters related to ILDs. The database is available for research on request and after signature of a license agreement.
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Affiliation(s)
- Adrien Depeursinge
- University of Applied Sciences Western Switzerland, TechnoArk, Sierre, Switzerland.
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16
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Bağcı U, Bray M, Caban J, Yao J, Mollura DJ. Computer-assisted detection of infectious lung diseases: a review. Comput Med Imaging Graph 2011; 36:72-84. [PMID: 21723090 DOI: 10.1016/j.compmedimag.2011.06.002] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2011] [Revised: 05/11/2011] [Accepted: 06/01/2011] [Indexed: 02/05/2023]
Abstract
Respiratory tract infections are a leading cause of death and disability worldwide. Although radiology serves as a primary diagnostic method for assessing respiratory tract infections, visual analysis of chest radiographs and computed tomography (CT) scans is restricted by low specificity for causal infectious organisms and a limited capacity to assess severity and predict patient outcomes. These limitations suggest that computer-assisted detection (CAD) could make a valuable contribution to the management of respiratory tract infections by assisting in the early recognition of pulmonary parenchymal lesions, providing quantitative measures of disease severity and assessing the response to therapy. In this paper, we review the most common radiographic and CT features of respiratory tract infections, discuss the challenges of defining and measuring these disorders with CAD, and propose some strategies to address these challenges.
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Affiliation(s)
- Ulaş Bağcı
- Center for Infectious Disease Imaging, Department of Radiology and Imaging Sciences, National Institutes of Health (NIH), Bethesda, MD 20892, USA.
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Yu P, Xu H, Zhu Y, Yang C, Sun X, Zhao J. An automatic computer-aided detection scheme for pneumoconiosis on digital chest radiographs. J Digit Imaging 2011; 24:382-93. [PMID: 20174852 PMCID: PMC3092047 DOI: 10.1007/s10278-010-9276-7] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022] Open
Abstract
This paper presents an automatic computer-aided detection scheme on digital chest radiographs to detect pneumoconiosis. Firstly, the lung fields are segmented from a digital chest X-ray image by using the active shape model method. Then, the lung fields are subdivided into six non-overlapping regions, according to Chinese diagnosis criteria of pneumoconiosis. The multi-scale difference filter bank is applied to the chest image to enhance the details of the small opacities, and the texture features are calculated from each region of the original and the processed images, respectively. After extracting the most relevant ones from the feature sets, support vector machine classifiers are utilized to separate the samples into the normal and the abnormal sets. Finally, the final classification is performed by the chest-based report-out and the classification probability values of six regions. Experiments are conducted on randomly selected images from our chest database. Both the training and the testing sets have 300 normal and 125 pneumoconiosis cases. In the training phase, training models and weighting factors for each region are derived. We evaluate the scheme using the full feature vectors or the selected feature vectors of the testing set. The results show that the classification performances are high. Compared with the previous methods, our fully automated scheme has a higher accuracy and a more convenient interaction. The scheme is very helpful to mass screening of pneumoconiosis in clinic.
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Affiliation(s)
- Peichun Yu
- Department of Biomedical Engineering, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, NO.800, Dongchuan Road, Shanghai, 200240 China
| | - Hao Xu
- Imaging Technologies Lab, GE Global Research, Shanghai, 201203 China
| | - Ying Zhu
- Department of Biomedical Engineering, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, NO.800, Dongchuan Road, Shanghai, 200240 China
| | - Chao Yang
- Imaging Technologies Lab, GE Global Research, Shanghai, 201203 China
| | - Xiwen Sun
- Shanghai Pulmonary Hospital, Shanghai, 200433 China
| | - Jun Zhao
- Department of Biomedical Engineering, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, NO.800, Dongchuan Road, Shanghai, 200240 China
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Clinical usefulness of temporal subtraction method in screening digital chest radiography with a mobile computed radiography system. Radiol Phys Technol 2010; 4:84-90. [PMID: 21170689 DOI: 10.1007/s12194-010-0109-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2010] [Revised: 11/17/2010] [Accepted: 11/18/2010] [Indexed: 10/18/2022]
Abstract
The temporal subtraction image which is obtained by subtraction of a previous image from a current image of the same patient can enhance interval changes. In this study, we applied the temporal subtraction method for lung cancer screening and evaluated the clinical usefulness by comparing the review time and the detection accuracy of lung cancers without and with subtraction images. Since 1996, we have been performing screening chest radiography for a mass survey of lung cancers in the Iwate Prefecture, Japan, by using a van equipped with a computed radiography system and a digital archive system. During the 12 years from 1997 to 2008, a total of 186,340 examinations were performed, and 121,526 (65.2%) temporal subtraction images were provided in the lung cancer screening. Twenty-four abnormal cases with lung cancer and 270 normal cases were selected from the lung cancer screening. Five radiologists participated in an observer performance study and interpreted previous and current chest radiographs without and with temporal subtraction images. In addition, radiologists interpreted previous and current images with a double-reading method. The average ROC curves demonstrated a significant improvement in the detection accuracy of lung cancers with the temporal subtraction images compared with that without the temporal subtraction images, and that with the double-reading method. Therefore, we believe strongly that the temporal subtraction method is clinically useful for radiologists in the detection of lung cancers in mass surveys.
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19
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Applying a statistical PTB detection procedure to complement the gold standard. Comput Med Imaging Graph 2010; 35:186-94. [PMID: 21036539 DOI: 10.1016/j.compmedimag.2010.10.002] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2009] [Revised: 02/02/2010] [Accepted: 10/06/2010] [Indexed: 12/22/2022]
Abstract
This paper investigates a novel statistical discrimination procedure to detect PTB when the gold standard requirement is taken into consideration. Archived data were used to establish two groups of patients which are the control and test group. The control group was used to develop the statistical discrimination procedure using four vectors of wavelet coefficients as feature vectors for the detection of pulmonary tuberculosis (PTB), lung cancer (LC), and normal lung (NL). This discrimination procedure was investigated using the test group where the number of sputum positive and sputum negative cases that were correctly classified as PTB cases were noted. The proposed statistical discrimination method is able to detect PTB patients and LC with high true positive fraction. The method is also able to detect PTB patients that are sputum negative and therefore may be used as a complement to the gold standard.
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20
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Thiessen NR, Bremner R. The solitary pulmonary nodule: approach for a general surgeon. Surg Clin North Am 2010; 90:1003-18. [PMID: 20955880 DOI: 10.1016/j.suc.2010.07.002] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
The solitary pulmonary nodule is a common finding on radiographic studies performed for other reasons. It is important that the probability of malignancy be assessed when these nodules are found. This chapter outlines a diagnostic approach for these nodules to optimize non-invasive and invasive testing, and describes the value of the various modalities used to evaluate these abnormalities.
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Affiliation(s)
- Nicholas R Thiessen
- Department of surgery, Joseph's Hospital and Medical Center, 350 West Thomas Road, Phoenix, AZ 85013, USA
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21
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Mouton A, Pitcher RD, Douglas TS. Computer-aided detection of pulmonary pathology in pediatric chest radiographs. MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION : MICCAI ... INTERNATIONAL CONFERENCE ON MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION 2010; 13:619-25. [PMID: 20879452 DOI: 10.1007/978-3-642-15711-0_77] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
A scheme for triaging pulmonary abnormalities in pediatric chest radiographs for specialist interpretation would be useful in resource-poor settings, especially those with a high tuberculosis burden. We assess computer-aided detection of pulmonary pathology in pediatric digital chest X-ray images. The method comprises four phases suggested in the literature: lung field segmentation, lung field subdivision, feature extraction and classification. The output of the system is a probability map for each image, giving an indication of the degree of abnormality of every region in the lung fields; the maps may be used as a visual tool for identifying those cases that need further attention. The system is evaluated on a set of anterior-posterior chest images obtained using a linear slot-scanning digital X-ray machine. The classification results produced an area under the ROC of 0.782, averaged over all regions.
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Affiliation(s)
- André Mouton
- MRC/UCT Medical Imaging Research Unit, Department of Human Biology, University of Cape Town, South Africa
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22
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Wang J, Li F, Doi K, Li Q. Computerized detection of diffuse lung disease in MDCT: the usefulness of statistical texture features. Phys Med Biol 2009; 54:6881-99. [PMID: 19864701 DOI: 10.1088/0031-9155/54/22/009] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Accurate detection of diffuse lung disease is an important step for computerized diagnosis and quantification of this disease. It is also a difficult clinical task for radiologists. We developed a computerized scheme to assist radiologists in the detection of diffuse lung disease in multi-detector computed tomography (CT). Two radiologists selected 31 normal and 37 abnormal CT scans with ground glass opacity, reticular, honeycombing and nodular disease patterns based on clinical reports. The abnormal cases in our database must contain at least an abnormal area with a severity of moderate or severe level that was subjectively rated by the radiologists. Because statistical texture features may lack the power to distinguish a nodular pattern from a normal pattern, the abnormal cases that contain only a nodular pattern were excluded. The areas that included specific abnormal patterns in the selected CT images were then delineated as reference standards by an expert chest radiologist. The lungs were first segmented in each slice by use of a thresholding technique, and then divided into contiguous volumes of interest (VOIs) with a 64 x 64 x 64 matrix size. For each VOI, we determined and employed statistical texture features, such as run-length and co-occurrence matrix features, to distinguish abnormal from normal lung parenchyma. In particular, we developed new run-length texture features with clear physical meanings to considerably improve the accuracy of our detection scheme. A quadratic classifier was employed for distinguishing between normal and abnormal VOIs by the use of a leave-one-case-out validation scheme. A rule-based criterion was employed to further determine whether a case was normal or abnormal. We investigated the impact of new and conventional texture features, VOI size and the dimensionality for regions of interest on detecting diffuse lung disease. When we employed new texture features for 3D VOIs of 64 x 64 x 64 voxels, our system achieved the highest performance level: a sensitivity of 86% and a specificity of 90% for the detection of abnormal VOIs, and a sensitivity of 89% and a specificity of 90% for the detection of abnormal cases. Our computerized scheme would be useful for assisting radiologists in the diagnosis of diffuse lung disease.
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Affiliation(s)
- Jiahui Wang
- Department of Radiology, Duke University, 2424 Erwin Road, Suite 302, Durham, NC 27705, USA
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23
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Mazurowski MA, Zurada JM, Tourassi GD. An adaptive incremental approach to constructing ensemble classifiers: application in an information-theoretic computer-aided decision system for detection of masses in mammograms. Med Phys 2009; 36:2976-84. [PMID: 19673196 PMCID: PMC2832038 DOI: 10.1118/1.3132304] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2008] [Revised: 04/18/2009] [Accepted: 04/20/2009] [Indexed: 11/07/2022] Open
Abstract
Ensemble classifiers have been shown efficient in multiple applications. In this article, the authors explore the effectiveness of ensemble classifiers in a case-based computer-aided diagnosis system for detection of masses in mammograms. They evaluate two general ways of constructing subclassifiers by resampling of the available development dataset: Random division and random selection. Furthermore, they discuss the problem of selecting the ensemble size and propose two adaptive incremental techniques that automatically select the size for the problem at hand. All the techniques are evaluated with respect to a previously proposed information-theoretic CAD system (IT-CAD). The experimental results show that the examined ensemble techniques provide a statistically significant improvement (AUC = 0.905 +/- 0.024) in performance as compared to the original IT-CAD system (AUC = 0.865 +/- 0.029). Some of the techniques allow for a notable reduction in the total number of examples stored in the case base (to 1.3% of the original size), which, in turn, results in lower storage requirements and a shorter response time of the system. Among the methods examined in this article, the two proposed adaptive techniques are by far the most effective for this purpose. Furthermore, the authors provide some discussion and guidance for choosing the ensemble parameters.
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Affiliation(s)
- Maciej A Mazurowski
- Department of Radiology, Carl E. Ravin Advanced Imaging Laboratories, Duke University Medical Center, Durham, North Carolina 27705, USA.
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Marchessoux CÉ, Kimpe T, Bert T. A Virtual Image Chain for Perceived and Clinical Image Quality of Medical Display. ACTA ACUST UNITED AC 2008. [DOI: 10.1109/jdt.2008.2001164] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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25
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Fujita H, Uchiyama Y, Nakagawa T, Fukuoka D, Hatanaka Y, Hara T, Lee GN, Hayashi Y, Ikedo Y, Gao X, Zhou X. Computer-aided diagnosis: the emerging of three CAD systems induced by Japanese health care needs. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2008; 92:238-48. [PMID: 18514362 DOI: 10.1016/j.cmpb.2008.04.003] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2007] [Revised: 03/24/2008] [Accepted: 04/15/2008] [Indexed: 05/16/2023]
Abstract
The aim of this paper is to describe three emerging computer-aided diagnosis (CAD) systems induced by Japanese health care needs. CAD has been developing fast in the last two decades. The idea of using a computer to help in medical image diagnosis is not new. Some pioneer studies are dated back to the 1960s. In 1998, the first U.S. FDA (Food and Drug Administration) approved commercial CAD system, a film-digitized mammography system, was launched by R2 Technologies, Inc. The success was quickly repeated by a number of companies. The approval of Medicare CAD reimbursement in the U.S. in 2001 further boosted the industry. Today, CAD has its significance in the economy of the medical industry. FDA approved CAD products in the field of breast imaging (mammography, ultrasonography and breast MRI) and chest imaging (radiography and CT) can be seen. In Japan, as part of the "Knowledge Cluster Initiative" of the government, three computer-aided diagnosis (CAD) projects are hosted at the Gifu University since 2004. These projects are regarding the development of CAD systems for the early detection of (1) cerebrovascular diseases using brain MRI and MRA images by detecting lacunar infarcts, unruptured aneurysms, and arterial occlusions; (2) ocular diseases such as glaucoma, diabetic retinopathy, and hypertensive retinopathy using retinal fundus images; and (3) breast cancers using ultrasound 3-D volumetric whole breast data by detecting the breast masses. The projects are entering their final development stage. Preliminary results are presented in this paper. Clinical examinations will be started soon, and commercialized CAD systems for the above subjects will appear by the completion of this project.
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Affiliation(s)
- Hiroshi Fujita
- Department of Intelligent Image Information, Division of Regeneration and Advanced Medical Sciences, Graduate School of Medicine, Gifu University, Gifu 501-1194, Japan
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26
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Mazurowski MA, Zurada JM, Tourassi GD. Selection of examples in case-based computer-aided decision systems. Phys Med Biol 2008; 53:6079-96. [PMID: 18854606 DOI: 10.1088/0031-9155/53/21/013] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Case-based computer-aided decision (CB-CAD) systems rely on a database of previously stored, known examples when classifying new, incoming queries. Such systems can be particularly useful since they do not need retraining every time a new example is deposited in the case base. The adaptive nature of case-based systems is well suited to the current trend of continuously expanding digital databases in the medical domain. To maintain efficiency, however, such systems need sophisticated strategies to effectively manage the available evidence database. In this paper, we discuss the general problem of building an evidence database by selecting the most useful examples to store while satisfying existing storage requirements. We evaluate three intelligent techniques for this purpose: genetic algorithm-based selection, greedy selection and random mutation hill climbing. These techniques are compared to a random selection strategy used as the baseline. The study is performed with a previously presented CB-CAD system applied for false positive reduction in screening mammograms. The experimental evaluation shows that when the development goal is to maximize the system's diagnostic performance, the intelligent techniques are able to reduce the size of the evidence database to 37% of the original database by eliminating superfluous and/or detrimental examples while at the same time significantly improving the CAD system's performance. Furthermore, if the case-base size is a main concern, the total number of examples stored in the system can be reduced to only 2-4% of the original database without a decrease in the diagnostic performance. Comparison of the techniques shows that random mutation hill climbing provides the best balance between the diagnostic performance and computational efficiency when building the evidence database of the CB-CAD system.
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Affiliation(s)
- Maciej A Mazurowski
- Department of Electrical and Computer Engineering, University of Louisville, Lutz Hall, Room 407, Louisville, KY 40292, USA.
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27
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Comparison of radiologist and CAD performance in the detection of CT-confirmed subtle pulmonary nodules on digital chest radiographs. Invest Radiol 2008; 43:343-8. [PMID: 18496038 DOI: 10.1097/rli.0b013e318168f705] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
OBJECTIVES Detection of subtle pulmonary nodules on digital radiography is a challenging task for radiologists. The aim of this study was to evaluate the performance of a newly approved computer aided detection (CAD) system. MATERIALS AND METHODS The sensitivity of 3 radiologists and of a CAD system for the detection of pulmonary nodules from 5 to 15 mm in size on digital chest radiography of 117 patients was compared. The reference standard was established by consensus reading of computed tomography scans by 2 experienced radiologists. Computed tomography scans and chest radiographs were performed within 4 weeks. Sixty-six pulmonary nodules from 42 patients, with a mean nodule diameter of 7.5 mm (standard deviation: 2.2 mm), were included in the statistical analysis. Seventy-five of the 117 patients did not have nodules from 5 to 15 mm of size. RESULTS Two hundred and eighty-eight false-positive detections of the CAD system were found with an average of 2.5 false-positives per image. Sensitivity of the CAD system was 39.4% (95% confidence interval: 11.8%), when compared with 18.2% to 30.3% (95% confidence interval 9.3% to 11.1%) of the 3 radiologists. Substantial agreement for nodule detection ([kappa]N: 0.64-0.73) was found among the 3 radiologists, whereas only moderate agreement was found between the radiologists and the CAD performance ([kappa]N: 0.45-0.52). CONCLUSIONS The CAD system's diagnostic sensitivity in detecting pulmonary nodules of 5 to 15 mm of size was superior to the 1 of radiologists. The CAD system may be used for assisting the radiologist in the detection of lung nodules on digital chest radiographs.
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28
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Efficacy of computer aided analysis in detection of significant coronary artery stenosis in cardiac using dual source computed tomography. Int J Cardiovasc Imaging 2008; 25:195-203. [DOI: 10.1007/s10554-008-9372-7] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/11/2008] [Accepted: 09/09/2008] [Indexed: 01/26/2023]
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29
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Ruiz D, Berenguer VJ, Soriano A, Martin J. A cooperative approach for the diagnosis of the melanoma. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2008; 2008:5144-5147. [PMID: 19163875 DOI: 10.1109/iembs.2008.4650372] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
In this work we present a decision support system for the melanoma diagnosis using individual methods and the collaboration between these methods. The system designed uses a photograph of the lesion and it makes a preprocessing task to extract the region of interest. Then, several characteristics of the image are analyzed, studying with different methods the degree of malignity; the methods used are based in Bayesian rules and in neural networks. Finally, each individual decision from each method contributes in some way to the final decision. The classification rate obtained with the cooperative approach is above 92%.
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Affiliation(s)
- D Ruiz
- Computer Technology Department, University of Alicante, P.O 99 03080 Spain.
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30
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Cronin P. 2D or not 2D that is the question, but 3D is the answer. Acad Radiol 2007; 14:769-71. [PMID: 17574127 DOI: 10.1016/j.acra.2007.05.008] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2007] [Revised: 05/09/2007] [Accepted: 05/09/2007] [Indexed: 11/22/2022]
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