1
|
Li Z, Lu J, Zhang B, Si J, Zhang H, Zhong Z, He S, Cai W, Li T. New Model and Public Online Prediction Platform for Risk Stratification of Vocal Cord Leukoplakia. Laryngoscope 2024. [PMID: 38828682 DOI: 10.1002/lary.31555] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2023] [Revised: 05/18/2024] [Accepted: 05/23/2024] [Indexed: 06/05/2024]
Abstract
OBJECTIVE To extract texture features from vocal cord leukoplakia (VCL) images and establish a VCL risk stratification prediction model using machine learning (ML) techniques. METHODS A total of 462 patients with pathologically confirmed VCL were retrospectively collected and divided into low-risk and high-risk groups. We use a 5-fold cross validation method to ensure the generalization ability of the model built using the included dataset and avoid overfitting. Totally 504 texture features were extracted from each laryngoscope image. After feature selection, 10 ML classifiers were utilized to construct the model. The SHapley Additive exPlanations (SHAP) was employed for feature analysis. To evaluate the model, accuracy, sensitivity, specificity, and the area under the receiver operating characteristic (ROC) curve (AUC) were utilized. In addition, the model was transformed into an online application for public use and further tested in an independent dataset with 52 cases of VCL. RESULTS A total of 12 features were finally selected, random forest (RF) achieved the best model performance, the mean accuracy, sensitivity, specificity, and AUC of the 5-fold cross validation were 92.2 ± 4.1%, 95.6 ± 4.0%, 85.8 ± 5.8%, and 90.7 ± 4.9%, respectively. The result is much higher than the clinicians (AUC between 63.1% and 75.2%). The SHAP algorithm ranks the importance of 12 texture features to the model. The test results of the additional independent datasets were 92.3%, 95.7%, 90.0%, and 93.3%, respectively. CONCLUSION The proposed VCL risk stratification prediction model, which has been developed into a public online prediction platform, may be applied in practical clinical work. LEVEL OF EVIDENCE 3 Laryngoscope, 2024.
Collapse
Affiliation(s)
- Zufei Li
- Department of Otorhinolaryngology, Head and Neck Surgery, Beijing Chaoyang Hospital, Capital Medical University, Beijing, China
| | - Jinghui Lu
- Department of Radiology, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts, U.S.A
| | - Baiwen Zhang
- Institute of Information and Artificial Intelligence Technology, Beijing Academy of Science and Technology, Beijing, 100089, China
| | - Joshua Si
- Department of Radiology, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts, U.S.A
| | - Hong Zhang
- Department of Pathology, Peking University First Hospital, Beijing, China
| | - Zhen Zhong
- Department of Otorhinolaryngology-Head and Neck Surgery, Peking University First Hospital, Beijing, China
| | - Shuai He
- Department of Otorhinolaryngology, Head and Neck Surgery, Beijing Chaoyang Hospital, Capital Medical University, Beijing, China
| | - Wenli Cai
- Department of Radiology, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts, U.S.A
| | - Tiancheng Li
- Department of Otorhinolaryngology, Head and Neck Surgery, Beijing Chaoyang Hospital, Capital Medical University, Beijing, China
- Department of Otorhinolaryngology-Head and Neck Surgery, Peking University First Hospital, Beijing, China
| |
Collapse
|
2
|
Nambisan AK, Maurya A, Lama N, Phan T, Patel G, Miller K, Lama B, Hagerty J, Stanley R, Stoecker WV. Improving Automatic Melanoma Diagnosis Using Deep Learning-Based Segmentation of Irregular Networks. Cancers (Basel) 2023; 15:cancers15041259. [PMID: 36831599 PMCID: PMC9953766 DOI: 10.3390/cancers15041259] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2023] [Revised: 02/08/2023] [Accepted: 02/09/2023] [Indexed: 02/18/2023] Open
Abstract
Deep learning has achieved significant success in malignant melanoma diagnosis. These diagnostic models are undergoing a transition into clinical use. However, with melanoma diagnostic accuracy in the range of ninety percent, a significant minority of melanomas are missed by deep learning. Many of the melanomas missed have irregular pigment networks visible using dermoscopy. This research presents an annotated irregular network database and develops a classification pipeline that fuses deep learning image-level results with conventional hand-crafted features from irregular pigment networks. We identified and annotated 487 unique dermoscopic melanoma lesions from images in the ISIC 2019 dermoscopic dataset to create a ground-truth irregular pigment network dataset. We trained multiple transfer learned segmentation models to detect irregular networks in this training set. A separate, mutually exclusive subset of the International Skin Imaging Collaboration (ISIC) 2019 dataset with 500 melanomas and 500 benign lesions was used for training and testing deep learning models for the binary classification of melanoma versus benign. The best segmentation model, U-Net++, generated irregular network masks on the 1000-image dataset. Other classical color, texture, and shape features were calculated for the irregular network areas. We achieved an increase in the recall of melanoma versus benign of 11% and in accuracy of 2% over DL-only models using conventional classifiers in a sequential pipeline based on the cascade generalization framework, with the highest increase in recall accompanying the use of the random forest algorithm. The proposed approach facilitates leveraging the strengths of both deep learning and conventional image processing techniques to improve the accuracy of melanoma diagnosis. Further research combining deep learning with conventional image processing on automatically detected dermoscopic features is warranted.
Collapse
Affiliation(s)
- Anand K. Nambisan
- Electrical and Computer Engineering Department, Missouri University of Science and Technology, Rolla, MO 65409, USA
| | - Akanksha Maurya
- Electrical and Computer Engineering Department, Missouri University of Science and Technology, Rolla, MO 65409, USA
| | - Norsang Lama
- Electrical and Computer Engineering Department, Missouri University of Science and Technology, Rolla, MO 65409, USA
| | - Thanh Phan
- Department of Biological Sciences, College of Arts, Sciences, and Education, Missouri University of Science and Technology, Rolla, MO 65409, USA
| | - Gehana Patel
- College of Health Sciences, University of Missouri—Columbia, Columbia, MO 65211, USA
| | - Keith Miller
- Electrical and Computer Engineering Department, Missouri University of Science and Technology, Rolla, MO 65409, USA
| | - Binita Lama
- Electrical and Computer Engineering Department, Missouri University of Science and Technology, Rolla, MO 65409, USA
| | - Jason Hagerty
- S&A Technologies, 10101 Stoltz Drive, Rolla, MO 65401, USA
| | - Ronald Stanley
- Electrical and Computer Engineering Department, Missouri University of Science and Technology, Rolla, MO 65409, USA
- Correspondence:
| | | |
Collapse
|
3
|
Abstract
Any cancer type is one of the leading death causes around the world. Skin cancer is a condition where malignant cells are formed in the tissues of the skin, such as melanoma, known as the most aggressive and deadly skin cancer type. The mortality rates of melanoma are associated with its high potential for metastasis in later stages, spreading to other body sites such as the lungs, bones, or the brain. Thus, early detection and diagnosis are closely related to survival rates. Computer Aided Design (CAD) systems carry out a pre-diagnosis of a skin lesion based on clinical criteria or global patterns associated with its structure. A CAD system is essentially composed by three modules: (i) lesion segmentation, (ii) feature extraction, and (iii) classification. In this work, a methodology is proposed for a CAD system development that detects global patterns using texture descriptors based on statistical measurements that allow melanoma detection from dermoscopic images. Image analysis was carried out using spatial domain methods, statistical measurements were used for feature extraction, and a classifier based on cellular automata (ACA) was used for classification. The proposed model was applied to dermoscopic images obtained from the PH2 database, and it was compared with other models using accuracy, sensitivity, and specificity as metrics. With the proposed model, values of 0.978, 0.944, and 0.987 of accuracy, sensitivity and specificity, respectively, were obtained. The results of the evaluated metrics show that the proposed method is more effective than other state-of-the-art methods for melanoma detection in dermoscopic images.
Collapse
|
4
|
Tomii K, Fujimoto A, Yokoyama R, Kabata Y, Fujita S, Hayashi R, Abe R. Erythema dyschromicum perstans with a Wagyu beef‐like appearance on dermoscopy. J Eur Acad Dermatol Venereol 2019; 34:e141-e142. [DOI: 10.1111/jdv.16096] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Affiliation(s)
- K. Tomii
- Division of Dermatology Niigata University Graduate School of Medical and Dental Sciences Niigata Japan
| | - A. Fujimoto
- Division of Dermatology Niigata University Graduate School of Medical and Dental Sciences Niigata Japan
| | - R. Yokoyama
- Division of Dermatology Niigata University Graduate School of Medical and Dental Sciences Niigata Japan
| | - Y. Kabata
- Division of Dermatology Niigata University Graduate School of Medical and Dental Sciences Niigata Japan
| | - S. Fujita
- Fujita Dermatological Clinic Nagaoka Japan
| | - R. Hayashi
- Division of Dermatology Niigata University Graduate School of Medical and Dental Sciences Niigata Japan
| | - R. Abe
- Division of Dermatology Niigata University Graduate School of Medical and Dental Sciences Niigata Japan
| |
Collapse
|
5
|
Talavera-Martínez L, Bibiloni P, González-Hidalgo M. Computational texture features of dermoscopic images and their link to the descriptive terminology: A survey. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2019; 182:105049. [PMID: 31494412 DOI: 10.1016/j.cmpb.2019.105049] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2019] [Revised: 08/12/2019] [Accepted: 08/23/2019] [Indexed: 06/10/2023]
Abstract
Computer-extracted texture features are relevant to diagnose cutaneous lesions such as melanomas. Our goal is to set a relationship between a well-established descriptive terminology, which describes the attributes of dermoscopic structures based on their aspect rather than their underlying causes, and the computational methods to extract texture-based features. By tackling this problem, we can ascertain what indicators used by dermatologists are reflected in the extracted texture features. We first review the state-of-the-art models for texture extraction in dermoscopic images. By comparing the methods' performance and goals, we conclude that (I) a single color space does not seem to give performances as good as using several ones, thus the latter is reasonable (II) the optimal number of extracted features seems to vary depending on the method's goal, and extracting a large number of features can lead to a loss of models robustness (III) methods such as GLCM, Sobel or Law energy filters are mainly used to capture local properties to detect specific dermoscopic structures (IV) methods that extract local and global features, like Gabor wavelets or SPT, tend to be used to analyze the presence of certain patterns of dermoscopic structures, e.g. globular, reticular, etc.
Collapse
Affiliation(s)
- Lidia Talavera-Martínez
- Universitat de les Illes Balears, SCOPIA Research Group, Palma 07122, Spain; Balearic Islands Health Research Institute (IdISBa), Palma 07010, Spain.
| | - Pedro Bibiloni
- Universitat de les Illes Balears, SCOPIA Research Group, Palma 07122, Spain; Balearic Islands Health Research Institute (IdISBa), Palma 07010, Spain.
| | - Manuel González-Hidalgo
- Universitat de les Illes Balears, SCOPIA Research Group, Palma 07122, Spain; Balearic Islands Health Research Institute (IdISBa), Palma 07010, Spain.
| |
Collapse
|
6
|
Saleem A, Bhatti N, Ashraf A, Zia M, Mahmood H. Segmentation and classification of consumer-grade and dermoscopic skin cancer images using hybrid textural analysis. J Med Imaging (Bellingham) 2019; 6:034501. [PMID: 31404402 PMCID: PMC6683676 DOI: 10.1117/1.jmi.6.3.034501] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2019] [Accepted: 07/09/2019] [Indexed: 10/14/2023] Open
Abstract
We present a skin lesion diagnosis system that segments the lesion and classifies it as melanoma or nonmelanoma. The proposed system is capable to deal with skin lesion images acquired by standard consumer-grade cameras and dermascopes. In order to suppress the image artifacts and enhance the lesion area, we propose an illumination correction strategy which consists of filtering in frequency and spatial domains. We introduce a hybrid model for lesion segmentation, which forms texture segments of the illumination corrected image using a factorization technique. Then based on the texture distinctiveness of the corrected and the texture segmented images, the saliency maps are computed, which are combined to decide lesion texture segments. In order to classify the segmented lesion, we propose a multimodal feature set composed of texture-, shape-, and color-based features. Classification performance of the multimodal features is evaluated using support vector machine, decision trees, and Mahalanobis distance classifiers. We evaluate the performance of the proposed system qualitatively and quantitatively. For the consumer-grade camera skin images dataset and ISIC 2017 dermascopic images dataset, the average segmentation accuracies are 98.4% and 95.4%, respectively; the classification accuracies are 98.06% and 93.95%, respectively.
Collapse
Affiliation(s)
- Afsah Saleem
- Quaid-i-Azam University, Department of Electronics, Islamabad, Pakistan
| | - Naeem Bhatti
- Quaid-i-Azam University, Department of Electronics, Islamabad, Pakistan
| | - Aqueel Ashraf
- Quaid-i-Azam University, Department of Electronics, Islamabad, Pakistan
| | - Muhammad Zia
- Quaid-i-Azam University, Department of Electronics, Islamabad, Pakistan
| | - Hasan Mahmood
- Quaid-i-Azam University, Department of Electronics, Islamabad, Pakistan
| |
Collapse
|
7
|
Barata C, Celebi ME, Marques JS. A Survey of Feature Extraction in Dermoscopy Image Analysis of Skin Cancer. IEEE J Biomed Health Inform 2019; 23:1096-1109. [DOI: 10.1109/jbhi.2018.2845939] [Citation(s) in RCA: 81] [Impact Index Per Article: 16.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
|
8
|
Dinnes J, Deeks JJ, Chuchu N, Matin RN, Wong KY, Aldridge RB, Durack A, Gulati A, Chan SA, Johnston L, Bayliss SE, Leonardi‐Bee J, Takwoingi Y, Davenport C, O'Sullivan C, Tehrani H, Williams HC. Visual inspection and dermoscopy, alone or in combination, for diagnosing keratinocyte skin cancers in adults. Cochrane Database Syst Rev 2018; 12:CD011901. [PMID: 30521688 PMCID: PMC6516870 DOI: 10.1002/14651858.cd011901.pub2] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
BACKGROUND Early accurate detection of all skin cancer types is important to guide appropriate management, to reduce morbidity and to improve survival. Basal cell carcinoma (BCC) is almost always a localised skin cancer with potential to infiltrate and damage surrounding tissue, whereas a minority of cutaneous squamous cell carcinomas (cSCCs) and invasive melanomas are higher-risk skin cancers with the potential to metastasise and cause death. Dermoscopy has become an important tool to assist specialist clinicians in the diagnosis of melanoma, and is increasingly used in primary-care settings. Dermoscopy is a precision-built handheld illuminated magnifier that allows more detailed examination of the skin down to the level of the superficial dermis. Establishing the value of dermoscopy over and above visual inspection for the diagnosis of BCC or cSCC in primary- and secondary-care settings is critical to understanding its potential contribution to appropriate skin cancer triage, including referral of higher-risk cancers to secondary care, the identification of low-risk skin cancers that might be treated in primary care and to provide reassurance to those with benign skin lesions who can be safely discharged. OBJECTIVES To determine the diagnostic accuracy of visual inspection and dermoscopy, alone or in combination, for the detection of (a) BCC and (b) cSCC, in adults. We separated studies according to whether the diagnosis was recorded face-to-face (in person) or based on remote (image-based) assessment. SEARCH METHODS We undertook a comprehensive search of the following databases from inception up to August 2016: Cochrane Central Register of Controlled Trials; MEDLINE; Embase; CINAHL; CPCI; Zetoc; Science Citation Index; US National Institutes of Health Ongoing Trials Register; NIHR Clinical Research Network Portfolio Database; and the World Health Organization International Clinical Trials Registry Platform. We studied reference lists and published systematic review articles. SELECTION CRITERIA Studies of any design that evaluated visual inspection or dermoscopy or both in adults with lesions suspicious for skin cancer, compared with a reference standard of either histological confirmation or clinical follow-up. DATA COLLECTION AND ANALYSIS Two review authors independently extracted all data using a standardised data extraction and quality assessment form (based on QUADAS-2). We contacted authors of included studies where information related to the target condition or diagnostic thresholds were missing. We estimated accuracy using hierarchical summary ROC methods. We undertook analysis of studies allowing direct comparison between tests. To facilitate interpretation of results, we computed values of sensitivity at the point on the SROC curve with 80% fixed specificity and values of specificity with 80% fixed sensitivity. We investigated the impact of in-person test interpretation; use of a purposely-developed algorithm to assist diagnosis; and observer expertise. MAIN RESULTS We included 24 publications reporting on 24 study cohorts, providing 27 visual inspection datasets (8805 lesions; 2579 malignancies) and 33 dermoscopy datasets (6855 lesions; 1444 malignancies). The risk of bias was mainly low for the index test (for dermoscopy evaluations) and reference standard domains, particularly for in-person evaluations, and high or unclear for participant selection, application of the index test for visual inspection and for participant flow and timing. We scored concerns about the applicability of study findings as of 'high' or 'unclear' concern for almost all studies across all domains assessed. Selective participant recruitment, lack of reproducibility of diagnostic thresholds and lack of detail on observer expertise were particularly problematic.The detection of BCC was reported in 28 datasets; 15 on an in-person basis and 13 image-based. Analysis of studies by prior testing of participants and according to observer expertise was not possible due to lack of data. Studies were primarily conducted in participants referred for specialist assessment of lesions with available histological classification. We found no clear differences in accuracy between dermoscopy studies undertaken in person and those which evaluated images. The lack of effect observed may be due to other sources of heterogeneity, including variations in the types of skin lesion studied, in dermatoscopes used, or in the use of algorithms and varying thresholds for deciding on a positive test result.Meta-analysis found in-person evaluations of dermoscopy (7 evaluations; 4683 lesions and 363 BCCs) to be more accurate than visual inspection alone for the detection of BCC (8 evaluations; 7017 lesions and 1586 BCCs), with a relative diagnostic odds ratio (RDOR) of 8.2 (95% confidence interval (CI) 3.5 to 19.3; P < 0.001). This corresponds to predicted differences in sensitivity of 14% (93% versus 79%) at a fixed specificity of 80% and predicted differences in specificity of 22% (99% versus 77%) at a fixed sensitivity of 80%. We observed very similar results for the image-based evaluations.When applied to a hypothetical population of 1000 lesions, of which 170 are BCC (based on median BCC prevalence across studies), an increased sensitivity of 14% from dermoscopy would lead to 24 fewer BCCs missed, assuming 166 false positive results from both tests. A 22% increase in specificity from dermoscopy with sensitivity fixed at 80% would result in 183 fewer unnecessary excisions, assuming 34 BCCs missed for both tests. There was not enough evidence to assess the use of algorithms or structured checklists for either visual inspection or dermoscopy.Insufficient data were available to draw conclusions on the accuracy of either test for the detection of cSCCs. AUTHORS' CONCLUSIONS Dermoscopy may be a valuable tool for the diagnosis of BCC as an adjunct to visual inspection of a suspicious skin lesion following a thorough history-taking including assessment of risk factors for keratinocyte cancer. The evidence primarily comes from secondary-care (referred) populations and populations with pigmented lesions or mixed lesion types. There is no clear evidence supporting the use of currently-available formal algorithms to assist dermoscopy diagnosis.
Collapse
Affiliation(s)
- Jacqueline Dinnes
- University of BirminghamInstitute of Applied Health ResearchBirminghamUKB15 2TT
- University Hospitals Birmingham NHS Foundation Trust and University of BirminghamNIHR Birmingham Biomedical Research CentreBirminghamUK
| | - Jonathan J Deeks
- University of BirminghamInstitute of Applied Health ResearchBirminghamUKB15 2TT
- University Hospitals Birmingham NHS Foundation Trust and University of BirminghamNIHR Birmingham Biomedical Research CentreBirminghamUK
| | - Naomi Chuchu
- University of BirminghamInstitute of Applied Health ResearchBirminghamUKB15 2TT
| | - Rubeta N Matin
- Churchill HospitalDepartment of DermatologyOld RoadHeadingtonOxfordUKOX3 7LE
| | - Kai Yuen Wong
- Oxford University Hospitals NHS Foundation TrustDepartment of Plastic and Reconstructive SurgeryOxfordUK
| | - Roger Benjamin Aldridge
- NHS Lothian/University of EdinburghDepartment of Plastic Surgery25/6 India StreetEdinburghUKEH3 6HE
| | - Alana Durack
- Addenbrooke’s Hospital, Cambridge University Hospitals NHS Foundation TrustDermatologyHills RoadCambridgeUKCB2 0QQ
| | - Abha Gulati
- Barts Health NHS TrustDepartment of DermatologyWhitechapelLondonUKE11BB
| | - Sue Ann Chan
- City HospitalBirmingham Skin CentreDudley RdBirminghamUKB18 7QH
| | - Louise Johnston
- NIHR Diagnostic Evidence Co‐operative Newcastle2nd Floor William Leech Building (Rm M2.061) Institute of Cellular Medicine Newcastle UniversityFramlington PlaceNewcastle upon TyneUKNE2 4HH
| | - Susan E Bayliss
- University of BirminghamInstitute of Applied Health ResearchBirminghamUKB15 2TT
| | - Jo Leonardi‐Bee
- The University of NottinghamDivision of Epidemiology and Public HealthClinical Sciences BuildingNottingham City Hospital NHS Trust Campus, Hucknall RoadNottinghamUKNG5 1PB
| | - Yemisi Takwoingi
- University of BirminghamInstitute of Applied Health ResearchBirminghamUKB15 2TT
- University Hospitals Birmingham NHS Foundation Trust and University of BirminghamNIHR Birmingham Biomedical Research CentreBirminghamUK
| | - Clare Davenport
- University of BirminghamInstitute of Applied Health ResearchBirminghamUKB15 2TT
| | | | - Hamid Tehrani
- Whiston HospitalDepartment of Plastic and Reconstructive SurgeryWarrington RoadLiverpoolUKL35 5DR
| | - Hywel C Williams
- University of NottinghamCentre of Evidence Based DermatologyQueen's Medical CentreDerby RoadNottinghamUKNG7 2UH
| | | | | |
Collapse
|
9
|
Dinnes J, Deeks JJ, Chuchu N, Ferrante di Ruffano L, Matin RN, Thomson DR, Wong KY, Aldridge RB, Abbott R, Fawzy M, Bayliss SE, Grainge MJ, Takwoingi Y, Davenport C, Godfrey K, Walter FM, Williams HC. Dermoscopy, with and without visual inspection, for diagnosing melanoma in adults. Cochrane Database Syst Rev 2018; 12:CD011902. [PMID: 30521682 PMCID: PMC6517096 DOI: 10.1002/14651858.cd011902.pub2] [Citation(s) in RCA: 69] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
BACKGROUND Melanoma has one of the fastest rising incidence rates of any cancer. It accounts for a small percentage of skin cancer cases but is responsible for the majority of skin cancer deaths. Although history-taking and visual inspection of a suspicious lesion by a clinician are usually the first in a series of 'tests' to diagnose skin cancer, dermoscopy has become an important tool to assist diagnosis by specialist clinicians and is increasingly used in primary care settings. Dermoscopy is a magnification technique using visible light that allows more detailed examination of the skin compared to examination by the naked eye alone. Establishing the additive value of dermoscopy over and above visual inspection alone across a range of observers and settings is critical to understanding its contribution for the diagnosis of melanoma and to future understanding of the potential role of the growing number of other high-resolution image analysis techniques. OBJECTIVES To determine the diagnostic accuracy of dermoscopy alone, or when added to visual inspection of a skin lesion, for the detection of cutaneous invasive melanoma and atypical intraepidermal melanocytic variants in adults. We separated studies according to whether the diagnosis was recorded face-to-face (in-person), or based on remote (image-based), assessment. SEARCH METHODS We undertook a comprehensive search of the following databases from inception up to August 2016: CENTRAL; MEDLINE; Embase; CINAHL; CPCI; Zetoc; Science Citation Index; US National Institutes of Health Ongoing Trials Register; NIHR Clinical Research Network Portfolio Database; and the World Health Organization International Clinical Trials Registry Platform. We studied reference lists and published systematic review articles. SELECTION CRITERIA Studies of any design that evaluated dermoscopy in adults with lesions suspicious for melanoma, compared with a reference standard of either histological confirmation or clinical follow-up. Data on the accuracy of visual inspection, to allow comparisons of tests, was included only if reported in the included studies of dermoscopy. DATA COLLECTION AND ANALYSIS Two review authors independently extracted all data using a standardised data extraction and quality assessment form (based on QUADAS-2). We contacted authors of included studies where information related to the target condition or diagnostic threshold were missing. We estimated accuracy using hierarchical summary receiver operating characteristic (SROC),methods. Analysis of studies allowing direct comparison between tests was undertaken. To facilitate interpretation of results, we computed values of sensitivity at the point on the SROC curve with 80% fixed specificity and values of specificity with 80% fixed sensitivity. We investigated the impact of in-person test interpretation; use of a purposely developed algorithm to assist diagnosis; observer expertise; and dermoscopy training. MAIN RESULTS We included a total of 104 study publications reporting on 103 study cohorts with 42,788 lesions (including 5700 cases), providing 354 datasets for dermoscopy. The risk of bias was mainly low for the index test and reference standard domains and mainly high or unclear for participant selection and participant flow. Concerns regarding the applicability of study findings were largely scored as 'high' concern in three of four domains assessed. Selective participant recruitment, lack of reproducibility of diagnostic thresholds and lack of detail on observer expertise were particularly problematic.The accuracy of dermoscopy for the detection of invasive melanoma or atypical intraepidermal melanocytic variants was reported in 86 datasets; 26 for evaluations conducted in person (dermoscopy added to visual inspection), and 60 for image-based evaluations (diagnosis based on interpretation of dermoscopic images). Analyses of studies by prior testing revealed no obvious effect on accuracy; analyses were hampered by the lack of studies in primary care, lack of relevant information and the restricted inclusion of lesions selected for biopsy or excision. Accuracy was higher for in-person diagnosis compared to image-based evaluations (relative diagnostic odds ratio (RDOR) 4.6, 95% confidence interval (CI) 2.4 to 9.0; P < 0.001).We compared accuracy for (a), in-person evaluations of dermoscopy (26 evaluations; 23,169 lesions and 1664 melanomas),versus visual inspection alone (13 evaluations; 6740 lesions and 459 melanomas), and for (b), image-based evaluations of dermoscopy (60 evaluations; 13,475 lesions and 2851 melanomas),versus image-based visual inspection (11 evaluations; 1740 lesions and 305 melanomas). For both comparisons, meta-analysis found dermoscopy to be more accurate than visual inspection alone, with RDORs of (a), 4.7 (95% CI 3.0 to 7.5; P < 0.001), and (b), 5.6 (95% CI 3.7 to 8.5; P < 0.001). For a), the predicted difference in sensitivity at a fixed specificity of 80% was 16% (95% CI 8% to 23%; 92% for dermoscopy + visual inspection versus 76% for visual inspection), and predicted difference in specificity at a fixed sensitivity of 80% was 20% (95% CI 7% to 33%; 95% for dermoscopy + visual inspection versus 75% for visual inspection). For b) the predicted differences in sensitivity was 34% (95% CI 24% to 46%; 81% for dermoscopy versus 47% for visual inspection), at a fixed specificity of 80%, and predicted difference in specificity was 40% (95% CI 27% to 57%; 82% for dermoscopy versus 42% for visual inspection), at a fixed sensitivity of 80%.Using the median prevalence of disease in each set of studies ((a), 12% for in-person and (b), 24% for image-based), for a hypothetical population of 1000 lesions, an increase in sensitivity of (a), 16% (in-person), and (b), 34% (image-based), from using dermoscopy at a fixed specificity of 80% equates to a reduction in the number of melanomas missed of (a), 19 and (b), 81 with (a), 176 and (b), 152 false positive results. An increase in specificity of (a), 20% (in-person), and (b), 40% (image-based), at a fixed sensitivity of 80% equates to a reduction in the number of unnecessary excisions from using dermoscopy of (a), 176 and (b), 304 with (a), 24 and (b), 48 melanomas missed.The use of a named or published algorithm to assist dermoscopy interpretation (as opposed to no reported algorithm or reported use of pattern analysis), had no significant impact on accuracy either for in-person (RDOR 1.4, 95% CI 0.34 to 5.6; P = 0.17), or image-based (RDOR 1.4, 95% CI 0.60 to 3.3; P = 0.22), evaluations. This result was supported by subgroup analysis according to algorithm used. We observed higher accuracy for observers reported as having high experience and for those classed as 'expert consultants' in comparison to those considered to have less experience in dermoscopy, particularly for image-based evaluations. Evidence for the effect of dermoscopy training on test accuracy was very limited but suggested associated improvements in sensitivity. AUTHORS' CONCLUSIONS Despite the observed limitations in the evidence base, dermoscopy is a valuable tool to support the visual inspection of a suspicious skin lesion for the detection of melanoma and atypical intraepidermal melanocytic variants, particularly in referred populations and in the hands of experienced users. Data to support its use in primary care are limited, however, it may assist in triaging suspicious lesions for urgent referral when employed by suitably trained clinicians. Formal algorithms may be of most use for dermoscopy training purposes and for less expert observers, however reliable data comparing approaches using dermoscopy in person are lacking.
Collapse
Affiliation(s)
- Jacqueline Dinnes
- University of BirminghamInstitute of Applied Health ResearchBirminghamUKB15 2TT
- University Hospitals Birmingham NHS Foundation Trust and University of BirminghamNIHR Birmingham Biomedical Research CentreBirminghamUK
| | - Jonathan J Deeks
- University of BirminghamInstitute of Applied Health ResearchBirminghamUKB15 2TT
- University Hospitals Birmingham NHS Foundation Trust and University of BirminghamNIHR Birmingham Biomedical Research CentreBirminghamUK
| | - Naomi Chuchu
- University of BirminghamInstitute of Applied Health ResearchBirminghamUKB15 2TT
| | | | - Rubeta N Matin
- Churchill HospitalDepartment of DermatologyOld RoadHeadingtonOxfordUKOX3 7LE
| | | | - Kai Yuen Wong
- Oxford University Hospitals NHS Foundation TrustDepartment of Plastic and Reconstructive SurgeryOxfordUK
| | - Roger Benjamin Aldridge
- NHS Lothian/University of EdinburghDepartment of Plastic Surgery25/6 India StreetEdinburghUKEH3 6HE
| | - Rachel Abbott
- University Hospital of WalesWelsh Institute of DermatologyHeath ParkCardiffUKCF14 4XW
| | - Monica Fawzy
- Norfolk and Norwich University Hospital NHS TrustDepartment of Plastic and Reconstructive SurgeryColney LaneNorwichUKNR4 7UY
| | - Susan E Bayliss
- University of BirminghamInstitute of Applied Health ResearchBirminghamUKB15 2TT
| | - Matthew J Grainge
- School of MedicineDivision of Epidemiology and Public HealthUniversity of NottinghamNottinghamUKNG7 2UH
| | - Yemisi Takwoingi
- University of BirminghamInstitute of Applied Health ResearchBirminghamUKB15 2TT
- University Hospitals Birmingham NHS Foundation Trust and University of BirminghamNIHR Birmingham Biomedical Research CentreBirminghamUK
| | - Clare Davenport
- University of BirminghamInstitute of Applied Health ResearchBirminghamUKB15 2TT
| | - Kathie Godfrey
- The University of Nottinghamc/o Cochrane Skin GroupNottinghamUK
| | - Fiona M Walter
- University of CambridgePublic Health & Primary CareStrangeways Research Laboratory, Worts CausewayCambridgeUKCB1 8RN
| | - Hywel C Williams
- University of NottinghamCentre of Evidence Based DermatologyQueen's Medical CentreDerby RoadNottinghamUKNG7 2UH
| | | | | |
Collapse
|
10
|
Medical Image Classification Based on Deep Features Extracted by Deep Model and Statistic Feature Fusion with Multilayer Perceptron . COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2018; 2018:2061516. [PMID: 30298088 PMCID: PMC6157177 DOI: 10.1155/2018/2061516] [Citation(s) in RCA: 69] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/03/2018] [Accepted: 08/09/2018] [Indexed: 12/21/2022]
Abstract
Medical image classification is a key technique of Computer-Aided Diagnosis (CAD) systems. Traditional methods rely mainly on the shape, color, and/or texture features as well as their combinations, most of which are problem-specific and have shown to be complementary in medical images, which leads to a system that lacks the ability to make representations of high-level problem domain concepts and that has poor model generalization ability. Recent deep learning methods provide an effective way to construct an end-to-end model that can compute final classification labels with the raw pixels of medical images. However, due to the high resolution of the medical images and the small dataset size, deep learning models suffer from high computational costs and limitations in the model layers and channels. To solve these problems, in this paper, we propose a deep learning model that integrates Coding Network with Multilayer Perceptron (CNMP), which combines high-level features that are extracted from a deep convolutional neural network and some selected traditional features. The construction of the proposed model includes the following steps. First, we train a deep convolutional neural network as a coding network in a supervised manner, and the result is that it can code the raw pixels of medical images into feature vectors that represent high-level concepts for classification. Second, we extract a set of selected traditional features based on background knowledge of medical images. Finally, we design an efficient model that is based on neural networks to fuse the different feature groups obtained in the first and second step. We evaluate the proposed approach on two benchmark medical image datasets: HIS2828 and ISIC2017. We achieve an overall classification accuracy of 90.1% and 90.2%, respectively, which are higher than the current successful methods.
Collapse
|
11
|
Amoabedini A, Farsani MS, Saberkari H, Aminian E. Employing the Local Radon Transform for Melanoma Segmentation in Dermoscopic Images. JOURNAL OF MEDICAL SIGNALS & SENSORS 2018; 8:184-194. [PMID: 30181967 PMCID: PMC6116320 DOI: 10.4103/jmss.jmss_40_17] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
In recent years, the number of patients suffering from melanoma, as the deadliest type of skin cancer, has grown significantly in the world. The most common technique to observe and diagnosis of such cancer is the use of noninvasive dermoscope lens. Since this approach is based on the expert ocular inference, early stage of melanoma diagnosis is a difficult task for dermatologist. The main purpose of this article is to introduce an efficient algorithm to analyze the dermoscopic images. The proposed algorithm consists of four stages including converting the image color space from the RGB to CIE, adjusting the color space by applying the combined histogram equalization and the Otsu thresholding-based approach, border extraction of the lesion through the local Radon transform, and recognizing the melanoma and nonmelanoma lesions employing the ABCD rule. Simulation results in the designed user-friendly software package environment confirmed that the proposed algorithm has the higher quantities of accuracy, sensitivity, and approximation correlation in comparison with the other state-of-the-art methods. These values are obtained 98.81 (98.92), 94.85 (89.51), and 90.99 (86.06) for melanoma (nonmelanoma) lesions, respectively.
Collapse
Affiliation(s)
- Alireza Amoabedini
- Department of Computer Engineering, Safadasht Branch, Islamic Azad University, Tehran, Iran
| | | | - Hamidreza Saberkari
- Department of Electrical Engineering, Sahand University of Technology, Tabriz, Iran
| | - Ehsan Aminian
- Department of Computer Engineering, Safadasht Branch, Islamic Azad University, Tehran, Iran
| |
Collapse
|
12
|
Pathan S, Prabhu KG, Siddalingaswamy P. Techniques and algorithms for computer aided diagnosis of pigmented skin lesions—A review. Biomed Signal Process Control 2018. [DOI: 10.1016/j.bspc.2017.07.010] [Citation(s) in RCA: 65] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
|
13
|
Erol R, Bayraktar M, Kockara S, Kaya S, Halic T. Texture based skin lesion abruptness quantification to detect malignancy. BMC Bioinformatics 2017; 18:484. [PMID: 29297290 PMCID: PMC5751661 DOI: 10.1186/s12859-017-1892-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Abruptness of pigment patterns at the periphery of a skin lesion is one of the most important dermoscopic features for detection of malignancy. In current clinical setting, abrupt cutoff of a skin lesion determined by an examination of a dermatologist. This process is subjective, nonquantitative, and error-prone. We present an improved computational model to quantitatively measure abruptness of a skin lesion over our previous method. To achieve this, we quantitatively analyze the texture features of a region within the lesion boundary. This region is bounded by an interior border line of the lesion boundary which is determined using level set propagation (LSP) method. This method provides a fast border contraction without a need for extensive boolean operations. Then, we build feature vectors of homogeneity, standard deviation of pixel values, and mean of the pixel values of the region between the contracted border and the original border. These vectors are then classified using neural networks (NN) and SVM classifiers. RESULTS As lower homogeneity indicates sharp cutoffs, suggesting melanoma, we carried out our experiments on two dermoscopy image datasets, which consist of 800 benign and 200 malignant melanoma cases. LSP method helped produce better results than Kaya et al., 2016 study. By using texture homogeneity at the periphery of a lesion border determined by LSP, as a classification results, we obtained 87% f1-score and 78% specificity; that we obtained better results than in the previous study. We also compared the performances of two different NN classifiers and support vector machine classifier. The best results obtained using combination of RGB color spaces with the fully-connected multi-hidden layer NN. CONCLUSIONS Computational results also show that skin lesion abrupt cutoff is a reliable indicator of malignancy. Results show that computational model of texture homogeneity along the periphery of skin lesion borders based on LSP is an effective way of quantitatively measuring abrupt cutoff of a lesion.
Collapse
Affiliation(s)
- Recep Erol
- Department of Computer Science, UCA, Conway, AR 72034 USA
| | | | - Sinan Kockara
- Department of Computer Science, UCA, Conway, AR 72034 USA
| | | | - Tansel Halic
- Department of Computer Science, UCA, Conway, AR 72034 USA
| |
Collapse
|
14
|
|
15
|
Incorporating Colour Information for Computer-Aided Diagnosis of Melanoma from Dermoscopy Images: A Retrospective Survey and Critical Analysis. Int J Biomed Imaging 2017; 2016:4868305. [PMID: 28096807 PMCID: PMC5206785 DOI: 10.1155/2016/4868305] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2016] [Revised: 11/05/2016] [Accepted: 11/23/2016] [Indexed: 11/18/2022] Open
Abstract
Cutaneous melanoma is the most life-threatening form of skin cancer. Although advanced melanoma is often considered as incurable, if detected and excised early, the prognosis is promising. Today, clinicians use computer vision in an increasing number of applications to aid early detection of melanoma through dermatological image analysis (dermoscopy images, in particular). Colour assessment is essential for the clinical diagnosis of skin cancers. Due to this diagnostic importance, many studies have either focused on or employed colour features as a constituent part of their skin lesion analysis systems. These studies range from using low-level colour features, such as simple statistical measures of colours occurring in the lesion, to availing themselves of high-level semantic features such as the presence of blue-white veil, globules, or colour variegation in the lesion. This paper provides a retrospective survey and critical analysis of contributions in this research direction.
Collapse
|
16
|
Kubota Y, Mitsukawa N, Chuma K, Akita S, Sasahara Y, Rikihisa N, Satoh K. Hyperpigmentation after surgery for a deep dermal burn of the dorsum of the hand: partial-thickness debridement followed by medium split-thickness skin grafting vs full-thickness debridement followed by thick split-thickness skin grafting. BURNS & TRAUMA 2016; 4:9. [PMID: 27574679 PMCID: PMC4964008 DOI: 10.1186/s41038-016-0039-7] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/20/2015] [Accepted: 03/31/2016] [Indexed: 06/06/2023]
Abstract
BACKGROUND Early excision and skin grafting are commonly used to treat deep dermal burns (DDBs) of the dorsum of the hand. Partial-thickness debridement (PTD) is one of the most commonly used procedures for the excision of burned tissue of the dorsum of the hand. In contrast, full-thickness debridement (FTD) has also been reported. However, it is unclear whether PTD or FTD is better. METHODS In this hospital-based retrospective study, we compared the outcomes of PTD followed by a medium split-thickness skin graft (STSG) with FTD followed by a thick STSG to treat a DDB of the dorsum of the hand in Japanese patients. To evaluate postoperative pigmentation of the skin graft, quantitative analyses were performed using the red, green, and blue (RGB) and the hue, saturation, and brightness (HSB) color spaces. We have organized the manuscript in a manner compliant with the Strengthening the Reporting of Observational Studies in Epidemiology (STROBE) statement. RESULTS Data from 11 patients were analyzed. Six hands (five patients) received grafts in the PTD group and eight hands (six patients) received grafts in the FTD group. Graft take was significantly better in the FTD group (median 98 %, interquartile range 95-99) than in the PTD group (median 90 %, interquartile range 85-90) (P < 0.01). Quantitative skin color analyses in both the RGB and HSB color spaces showed that postoperative grafted skin was significantly darker than the adjacent control area in the PTD group, but not in the FTD group. CONCLUSIONS There is a possibility that FTD followed by a thick STSG is an option that can reduce the risk of hyperpigmentation after surgery for DDB of the dorsum of the hand in Japanese patients. Further investigation is needed to clarify whether the FTD or the thick STSG or both are the factor for the control of hyperpigmentation.
Collapse
Affiliation(s)
- Yoshitaka Kubota
- Department of Plastic Surgery, Chiba University, 1-8-1, Inohana, Chuo-ku, Chiba, Chiba 260-8677 Japan
| | - Nobuyuki Mitsukawa
- Department of Plastic Surgery, Chiba University, 1-8-1, Inohana, Chuo-ku, Chiba, Chiba 260-8677 Japan
| | - Kumiko Chuma
- Department of Plastic Surgery, Tokyo Rosai Hospital, 4-13-21, Omoriminami, Ota-ku, Tokyo 143-0013 Japan
| | - Shinsuke Akita
- Department of Plastic Surgery, Chiba University, 1-8-1, Inohana, Chuo-ku, Chiba, Chiba 260-8677 Japan
| | - Yoshitaro Sasahara
- Department of Plastic Surgery, Chiba University, 1-8-1, Inohana, Chuo-ku, Chiba, Chiba 260-8677 Japan
| | - Naoaki Rikihisa
- Department of Plastic Surgery, Chiba Rosai Hospital, 2-16, Tatsumidaihigashi, Ichihara, Chiba 290-0003 Japan
| | - Kaneshige Satoh
- Department of Plastic Surgery, Chiba University, 1-8-1, Inohana, Chuo-ku, Chiba, Chiba 260-8677 Japan
| |
Collapse
|
17
|
Kefel S, Pelin Kefel S, LeAnder RW, Kaur R, Kasmi R, Mishra NK, Rader RK, Cole JG, Woolsey ZT, Stoecker WV. Adaptable texture-based segmentation by variance and intensity for automatic detection of semitranslucent and pink blush areas in basal cell carcinoma. Skin Res Technol 2016; 22:412-422. [DOI: 10.1111/srt.12281] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/19/2015] [Indexed: 11/30/2022]
Affiliation(s)
- S. Kefel
- Department of Electrical and Computer Engineering; Southern Illinois University; Edwardsville IL USA
| | - S. Pelin Kefel
- Department of Electrical and Computer Engineering; Southern Illinois University; Edwardsville IL USA
| | - R. W. LeAnder
- Department of Electrical and Computer Engineering; Southern Illinois University; Edwardsville IL USA
| | - R. Kaur
- Department of Electrical and Computer Engineering; Southern Illinois University; Edwardsville IL USA
| | - R. Kasmi
- Department of Electrical Engineering; University of Bejaia; Bejaia Algeria
| | | | - R. K. Rader
- Stoecker & Associates; Rolla MO USA
- School of Medicine; University of Missouri; Columbia MO USA
| | | | | | - W. V. Stoecker
- Stoecker & Associates; Rolla MO USA
- School of Medicine; University of Missouri; Columbia MO USA
| |
Collapse
|
18
|
Lingala M, Stanley RJ, Rader RK, Hagerty J, Rabinovitz HS, Oliviero M, Choudhry I, Stoecker WV. Fuzzy logic color detection: Blue areas in melanoma dermoscopy images. Comput Med Imaging Graph 2014; 38:403-10. [PMID: 24786720 DOI: 10.1016/j.compmedimag.2014.03.007] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2013] [Revised: 03/15/2014] [Accepted: 03/24/2014] [Indexed: 12/30/2022]
Abstract
Fuzzy logic image analysis techniques were used to analyze three shades of blue (lavender blue, light blue, and dark blue) in dermoscopic images for melanoma detection. A logistic regression model provided up to 82.7% accuracy for melanoma discrimination for 866 images. With a support vector machines (SVM) classifier, lower accuracy was obtained for individual shades (79.9-80.1%) compared with up to 81.4% accuracy with multiple shades. All fuzzy blue logic alpha cuts scored higher than the crisp case. Fuzzy logic techniques applied to multiple shades of blue can assist in melanoma detection. These vector-based fuzzy logic techniques can be extended to other image analysis problems involving multiple colors or color shades.
Collapse
Affiliation(s)
- Mounika Lingala
- Department of Electrical and Computer Engineering, Missouri University of Science and Technology, G20 Emerson Electric Company Hall, 301 West 16th Street, Rolla, MO 65409-0040, United States.
| | - R Joe Stanley
- Department of Electrical and Computer Engineering, Missouri University of Science and Technology, 127 Emerson Electric Company Hall, 301 West 16th Street, Rolla, MO 65409-0040, United States.
| | - Ryan K Rader
- Stoecker & Associates, LLC 10101 Stoltz Drive Rolla, MO 65401-7714, United States.
| | - Jason Hagerty
- Stoecker & Associates, LLC 10101 Stoltz Drive Rolla, MO 65401-7714, United States.
| | - Harold S Rabinovitz
- Skin & Cancer Associates, 201 NW 82nd Avenue, Suite 501, Plantation, FL 33324, United States.
| | - Margaret Oliviero
- Skin & Cancer Associates, 201 NW 82nd Avenue, Suite 501, Plantation, FL 33324, United States.
| | - Iqra Choudhry
- Stoecker & Associates, LLC 10101 Stoltz Drive Rolla, MO 65401-7714, United States.
| | - William V Stoecker
- Stoecker & Associates, LLC 10101 Stoltz Drive Rolla, MO 65401-7714, United States.
| |
Collapse
|
19
|
Hoeben BAW, Starmans MHW, Leijenaar RTH, Dubois LJ, van der Kogel AJ, Kaanders JHAM, Boutros PC, Lambin P, Bussink J. Systematic analysis of 18F-FDG PET and metabolism, proliferation and hypoxia markers for classification of head and neck tumors. BMC Cancer 2014; 14:130. [PMID: 24571588 PMCID: PMC3940254 DOI: 10.1186/1471-2407-14-130] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2013] [Accepted: 02/18/2014] [Indexed: 02/01/2023] Open
Abstract
Background Quantification of molecular cell processes is important for prognostication and treatment individualization of head and neck cancer (HNC). However, individual tumor comparison can show discord in upregulation similarities when analyzing multiple biological mechanisms. Elaborate tumor characterization, integrating multiple pathways reflecting intrinsic and microenvironmental properties, may be beneficial to group most uniform tumors for treatment modification schemes. The goal of this study was to systematically analyze if immunohistochemical (IHC) assessment of molecular markers, involved in treatment resistance, and 18F-FDG PET parameters could accurately distinguish separate HNC tumors. Methods Several imaging parameters and texture features for 18F-FDG small-animal PET and immunohistochemical markers related to metabolism, hypoxia, proliferation and tumor blood perfusion were assessed within groups of BALB/c nu/nu mice xenografted with 14 human HNC models. Classification methods were used to predict tumor line based on sets of parameters. Results We found that 18F-FDG PET could not differentiate between the tumor lines. On the contrary, combined IHC parameters could accurately allocate individual tumors to the correct model. From 9 analyzed IHC parameters, a cluster of 6 random parameters already classified 70.3% correctly. Combining all PET/IHC characteristics resulted in the highest tumor line classification accuracy (81.0%; cross validation 82.0%), which was just 2.2% higher (p = 5.2×10-32) than the performance of the IHC parameter/feature based model. Conclusions With a select set of IHC markers representing cellular processes of metabolism, proliferation, hypoxia and perfusion, one can reliably distinguish between HNC tumor lines. Addition of 18F-FDG PET improves classification accuracy of IHC to a significant yet minor degree. These results may form a basis for development of tumor characterization models for treatment allocation purposes.
Collapse
Affiliation(s)
- Bianca A W Hoeben
- Department of Radiation Oncology, Radboud University Medical Center, P,O, Box 9101, Nijmegen 6500 HB, The Netherlands.
| | | | | | | | | | | | | | | | | |
Collapse
|
20
|
García Arroyo JL, García Zapirain B. Detection of pigment network in dermoscopy images using supervised machine learning and structural analysis. Comput Biol Med 2014; 44:144-57. [DOI: 10.1016/j.compbiomed.2013.11.002] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2013] [Revised: 10/30/2013] [Accepted: 11/03/2013] [Indexed: 11/29/2022]
|
21
|
Barata C, Ruela M, Mendonça T, Marques JS. A Bag-of-Features Approach for the Classification of Melanomas in Dermoscopy Images: The Role of Color and Texture Descriptors. SERIES IN BIOENGINEERING 2014. [DOI: 10.1007/978-3-642-39608-3_3] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]
|
22
|
Masood A, Al-Jumaily AA. Computer aided diagnostic support system for skin cancer: a review of techniques and algorithms. Int J Biomed Imaging 2013; 2013:323268. [PMID: 24575126 PMCID: PMC3885227 DOI: 10.1155/2013/323268] [Citation(s) in RCA: 85] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2013] [Accepted: 10/30/2013] [Indexed: 11/17/2022] Open
Abstract
Image-based computer aided diagnosis systems have significant potential for screening and early detection of malignant melanoma. We review the state of the art in these systems and examine current practices, problems, and prospects of image acquisition, pre-processing, segmentation, feature extraction and selection, and classification of dermoscopic images. This paper reports statistics and results from the most important implementations reported to date. We compared the performance of several classifiers specifically developed for skin lesion diagnosis and discussed the corresponding findings. Whenever available, indication of various conditions that affect the technique's performance is reported. We suggest a framework for comparative assessment of skin cancer diagnostic models and review the results based on these models. The deficiencies in some of the existing studies are highlighted and suggestions for future research are provided.
Collapse
Affiliation(s)
- Ammara Masood
- School of Electrical, Mechanical and Mechatronic Engineering, University of Technology, Broadway Ultimo, Sydney, NSW 2007, Australia
| | - Adel Ali Al-Jumaily
- School of Electrical, Mechanical and Mechatronic Engineering, University of Technology, Broadway Ultimo, Sydney, NSW 2007, Australia
| |
Collapse
|
23
|
A Color and Texture Based Hierarchical K-NN Approach to the Classification of Non-melanoma Skin Lesions. COLOR MEDICAL IMAGE ANALYSIS 2013. [DOI: 10.1007/978-94-007-5389-1_4] [Citation(s) in RCA: 122] [Impact Index Per Article: 11.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/04/2022]
|
24
|
Shakya NM, LeAnder RW, Hinton KA, Stricklin SM, Rader RK, Hagerty J, Stoecker WV. Discrimination of squamous cell carcinoma in situ from seborrheic keratosis by color analysis techniques requires information from scale, scale-crust and surrounding areas in dermoscopy images. Comput Biol Med 2012; 42:1165-9. [PMID: 23117020 DOI: 10.1016/j.compbiomed.2012.09.010] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2011] [Revised: 09/20/2012] [Accepted: 09/24/2012] [Indexed: 11/16/2022]
Abstract
Scale-crust, also termed "keratin crust", appears as yellowish-to-tan scale on the skin's surface. It is caused by hyperkeratosis and parakeratosis in inflamed areas of squamous cell carcinoma in situ (SCCIS, Bowen's disease) and is a critical dermoscopy feature for detecting this skin cancer. In contrast, scale appears as a white-to-ivory detaching layer of the skin, without crust, and is most commonly seen in benign lesions such as seborrheic keratoses (SK). Distinguishing scale-crust from ordinary scale in digital dermoscopy images holds promise for early SCCIS detection and differentiation from SK. Reported here are image analysis techniques that best characterize scale-crust in SCCIS and scale in SK, thereby allowing accurate separation of these two dermoscopic features. Classification using a logistic regression operating on color features extracted from these digital dermoscopy structures can reliably separate SCCIS from SK.
Collapse
Affiliation(s)
- N M Shakya
- Department of Electrical and Computer Engineering, Southern Illinois University Edwardsville, IL 62026-1801, USA
| | | | | | | | | | | | | |
Collapse
|
25
|
Computerized analysis of pigmented skin lesions: A review. Artif Intell Med 2012; 56:69-90. [DOI: 10.1016/j.artmed.2012.08.002] [Citation(s) in RCA: 238] [Impact Index Per Article: 19.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2012] [Revised: 08/02/2012] [Accepted: 08/19/2012] [Indexed: 11/20/2022]
|
26
|
Barata C, Marques JS, Rozeira J. A system for the detection of pigment network in dermoscopy images using directional filters. IEEE Trans Biomed Eng 2012; 59:2744-54. [PMID: 22829364 DOI: 10.1109/tbme.2012.2209423] [Citation(s) in RCA: 87] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
A pigment network is one of the most important dermoscopic structures. This paper describes an automatic system that performs its detection in dermoscopy images. The proposed system involves a set of sequential steps. First, a preprocessing algorithm is applied to the dermoscopy image. Then, a bank of directional filters and a connected component analysis are used in order to detect the "lines" of the pigment network. Finally, features are extracted from the detected network and used to train an AdaBoost algorithm to classify each lesion regarding the presence of the pigment network. The algorithm was tested on a dataset of 200 medically annotated images from the database of Hospital Pedro Hispano (Matosinhos), achieving a sensitivity = 91.1% and a specificity = 82.1%.
Collapse
Affiliation(s)
- Catarina Barata
- Institute for Systems and Robotics, Instituto Superior Tecnico, Lisboa 1049-001, Portugal.
| | | | | |
Collapse
|
27
|
Rubegni P, Cevenini G, Nami N, Argenziano G, Saida T, Burroni M, Bono R, Quaglino P, Barbini P, Miracco C, Lamberti A, Fimiani M. Dermoscopy and Digital Dermoscopy Analysis of Palmoplantar Equivocal Pigmented Skin Lesions in Caucasians. Dermatology 2012. [DOI: 10.1159/000343928] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022] Open
|