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Shimpi MT, Sajjad M, Öberg S, Larsson JA. Physical binding energies using the electron localization function in 4-hydroxyphenylboronic acid co-crystals with aza donors. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2023; 35:505901. [PMID: 37659400 DOI: 10.1088/1361-648x/acf638] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2023] [Accepted: 09/01/2023] [Indexed: 09/04/2023]
Abstract
Binding energies are traditionally simulated using cluster models by computation of each synthon for each individual co-crystal former. However, our investigation of the binding strengths using the electron localization function (ELF) reveals that these can be determined directly from the crystal supercell computations. We propose a new modeling protocol for the computation of physical binding energies directly from bulk simulations using ELF analysis. In this work, we establish a correlation between ELF values and binding energies calculated for co-crystals of 4-hydroxyphenylboronic acid (4HPBA) with four different aza donors using density functional theory with varying descriptions of dispersion. Boronic acids are gaining significant interest in the field of crystal engineering, but theoretical studies on their use in materials are still very limited. Here, we present a systematic investigation of the non-covalent interactions in experimentally realized co-crystals. Prior diffraction studies on these complexes have shown the competitive nature between the boronic acid functional group and the para-substituted phenolic group forming heteromeric interactions with aza donors. We determine the stability of the co-crystals by simulating their lattice energies, and the different dispersion descriptions show similar trends in lattice energies and lattice parameters. Our study bolsters the experimental observation of the boronic acid group as a competitive co-crystal former in addition to the well-studied phenolic group. Further research on correlating ELF values for physical binding could potentially transform this approach to a viable alternative for the computation of binding energies.
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Affiliation(s)
- Mayura Talwelkar Shimpi
- Applied Physics, Division of Materials Science, Department of Engineering Sciences and Mathematics, Luleå University of Technology, SE-97187 Luleå, Sweden
- Department of Pharmaceutical Biosciences, Uppsala University, PO Box 591, 75124 Uppsala, Sweden
| | - Muhammad Sajjad
- Applied Physics, Division of Materials Science, Department of Engineering Sciences and Mathematics, Luleå University of Technology, SE-97187 Luleå, Sweden
- Nottingham Ningbo China Beacons of Excellence Research and Innovation Institute, University of Nottingham Ningbo China, Ningbo, People's Republic of China
| | - Sven Öberg
- Applied Physics, Division of Materials Science, Department of Engineering Sciences and Mathematics, Luleå University of Technology, SE-97187 Luleå, Sweden
| | - J Andreas Larsson
- Applied Physics, Division of Materials Science, Department of Engineering Sciences and Mathematics, Luleå University of Technology, SE-97187 Luleå, Sweden
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Ruelas‐Alvarez GY, Cárdenas‐Valenzuela AJ, Cruz‐Enríquez A, Höpfl H, Campos‐Gaxiola JJ, Rodríguez‐Rivera MA, Rodríguez‐Molina B. Exploration of the Luminescence Properties of Organic Phosphate Salts of 3‐Quinoline‐ and 5‐Isoquinolineboronic Acid. Eur J Inorg Chem 2019. [DOI: 10.1002/ejic.201900244] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Affiliation(s)
- Glenda Y. Ruelas‐Alvarez
- Facultad de Ingeniería Mochis Universidad Autónoma de Sinaloa Fuente de Poseidón y Prol. A. Flores S/N C.P. 81223 C.U. Los Mochis, Sinaloa México
| | - A. Jaquelin Cárdenas‐Valenzuela
- Facultad de Ingeniería Mochis Universidad Autónoma de Sinaloa Fuente de Poseidón y Prol. A. Flores S/N C.P. 81223 C.U. Los Mochis, Sinaloa México
| | - Adriana Cruz‐Enríquez
- Facultad de Ingeniería Mochis Universidad Autónoma de Sinaloa Fuente de Poseidón y Prol. A. Flores S/N C.P. 81223 C.U. Los Mochis, Sinaloa México
| | - Herbert Höpfl
- Centro de Investigaciones Químicas, Instituto de Investigación en Ciencias Básicas y Aplicadas Universidad Autónoma del Estado de Morelos Av. Universidad 1001, C.P. 62209 Cuernavaca México
| | - José J. Campos‐Gaxiola
- Facultad de Ingeniería Mochis Universidad Autónoma de Sinaloa Fuente de Poseidón y Prol. A. Flores S/N C.P. 81223 C.U. Los Mochis, Sinaloa México
| | - Mario A. Rodríguez‐Rivera
- Centro de Investigaciones en Óptica A.C. (CIO) Loma del Bosque #115, Col. Lomas del Campestre, C.P. 37150 León Guanajuato México
| | - Braulio Rodríguez‐Molina
- Instituto de Química Universidad Nacional Autónoma de México Ciudad Universitaria, Del. Coyoacán Ciudad de México México
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Cárdenas-Valenzuela AJ, González-García G, Zárraga- Nuñez R, Höpfl H, Campos-Gaxiola JJ, Cruz-Enríquez A. Crystal structure and Hirshfeld surface analysis of 3-cyano-phenyl-boronic acid. Acta Crystallogr E Crystallogr Commun 2018; 74:441-444. [PMID: 29765741 PMCID: PMC5946963 DOI: 10.1107/s2056989018003146] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2018] [Accepted: 02/23/2018] [Indexed: 12/02/2022]
Abstract
In the title compound, C7H6BNO2, the mean plane of the -B(OH)2 group is twisted by 21.28 (6)° relative to the cyano-phenyl ring mean plane. In the crystal, mol-ecules are linked by O-H⋯O and O-H⋯N hydrogen bonds, forming chains propagating along the [101] direction. Offset π-π and B⋯π stacking inter-actions link the chains, forming a three-dimensional network. Hirshfeld surface analysis shows that van der Waals inter-actions constitute a further major contribution to the inter-molecular inter-actions, with H⋯H contacts accounting for 25.8% of the surface.
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Affiliation(s)
- A. Jaquelin Cárdenas-Valenzuela
- Facultad de Ingeniería Mochis, Universidad Autónoma de Sinaloa, Fuente de Poseidón y Prol. A. Flores S/N, CP 81223, C.U. Los Mochis, Sinaloa, México
| | - Gerardo González-García
- Departamento de Química, División de Ciencias Naturales y Exactas, Campus Guanajuato, Universidad de Guanajuato, Sede Noria Alta, Noria Alta S/N, Col. Noria Alta, CP 36050, Guanajuato, Gto., México
| | - Ramón Zárraga- Nuñez
- Departamento de Química, División de Ciencias Naturales y Exactas, Campus Guanajuato, Universidad de Guanajuato, Sede Noria Alta, Noria Alta S/N, Col. Noria Alta, CP 36050, Guanajuato, Gto., México
| | - Herbert Höpfl
- Centro de Investigaciones Químicas, Instituto de Investigación en Ciencias Básicas y Aplicadas, Universidad Autónoma del Estado de Morelos, Av. Universidad 1001, CP 62209, Cuernavaca, Morelos, México
| | - José J. Campos-Gaxiola
- Facultad de Ingeniería Mochis, Universidad Autónoma de Sinaloa, Fuente de Poseidón y Prol. A. Flores S/N, CP 81223, C.U. Los Mochis, Sinaloa, México
| | - Adriana Cruz-Enríquez
- Facultad de Ingeniería Mochis, Universidad Autónoma de Sinaloa, Fuente de Poseidón y Prol. A. Flores S/N, CP 81223, C.U. Los Mochis, Sinaloa, México
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4
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On the effect of external perturbation on amino acid salt bridge: a DFT study. J CHEM SCI 2017. [DOI: 10.1007/s12039-017-1266-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Campos-Gaxiola JJ, García-Grajeda BA, Hernández-Ahuactzi IF, Guerrero-Álvarez JA, Höpfl H, Cruz-Enríquez A. Supramolecular networks in molecular complexes of pyridine boronic acids and polycarboxylic acids: synthesis, structural characterization and fluorescence properties. CrystEngComm 2017. [DOI: 10.1039/c7ce00762k] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
3- and 4-pyridineboronic acids have been combined with trimesic and pyromellitic acids to give three molecular complexes.
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Affiliation(s)
| | | | | | - Jorge A. Guerrero-Álvarez
- Centro de Investigaciones Químicas
- Instituto de Investigación en Ciencias Básicas y Aplicadas
- Universidad Autónoma del Estado de Morelos
- Cuernavaca
- Mexico
| | - Herbert Höpfl
- Centro de Investigaciones Químicas
- Instituto de Investigación en Ciencias Básicas y Aplicadas
- Universidad Autónoma del Estado de Morelos
- Cuernavaca
- Mexico
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Saha B, Bhattacharyya PK. Adsorption of amino acids on boron and/or nitrogen doped functionalized graphene: A Density Functional Study. COMPUT THEOR CHEM 2016. [DOI: 10.1016/j.comptc.2016.04.017] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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Phukan N, Baruah JB. Solvent and anion facilitated conformational changes in benzylamine substituted thiazolamine. NEW J CHEM 2016. [DOI: 10.1039/c6nj00154h] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Solvent and anion guided conformational adjustments in the syn–anti–syn form of N,N′-(1,4-phenylene-bis(methylene))-bis(5-methylthiazol-2-amine) and the utility of nitrate ions in stabilizing the anti–anti–anti form are established.
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Affiliation(s)
- Nithi Phukan
- Department of Chemistry
- Indian Institute of Technology Guwahati
- Guwahati 781 039
- India
| | - Jubaraj B. Baruah
- Department of Chemistry
- Indian Institute of Technology Guwahati
- Guwahati 781 039
- India
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