Binding of carboxylates to gold nanoparticles: A theoretical study of the adsorption of formate on Au20

Direct and Water-Mediated Adsorption of Stabilizers on SERS-Active Colloidal Bimetallic Plasmonic Nanomaterials: Insight into Citrate-AuAg Interactions from DFT Calculations

In previous studies, AuAg colloidal nanostar formulations were developed with the two-fold aim of producing optimized surface-enhanced Raman spectroscopy (SERS) substrates and investigating the nature of the capping process itself. Findings demonstrated that the nanoparticle metals are alloyed and neutral, and capping by stabilizers occurs via chemisorption. This study utilizes citrate as the model stabilizer and investigates the mechanistic aspects of its interaction with mono- (Au₂₀) and bimetallic (Au₁₉Ag) surfaces by density functional theory (DFT) calculations. Citrate was modeled according to the colloid's pH and surrounded by a water and sodium first solvation shell. A population of stable cluster-citrate structures was obtained, and energies were refined at the uB3LYP//LANL2TZ(f)/cc-pVTZ level of theory. Solvation was accounted for both explicitly and implicitly by the application of the continuum model SMD. Results indicate that both direct binding and binding by water proxy through the charge-transfer complex formation are thermodynamically favorable. Water participation in citrate adsorption is supported by the adsorption behavior observed experimentally and the comparison between experimental and DFT-simulated IR spectra. Vibrational mode analysis suggests the possible presence of water within a crystal in dried nanostar residues. All ΔG_ads(aq) indicate a weak chemisorptive process, leading to the hypothesis that citrate could be displaced by analytes during SERS measurements.

Electric Potential of Citrate-Capped Gold Nanoparticles Is Affected by Poly(allylamine hydrochloride) and Salt Concentration

The structure near polyelectrolyte-coated gold nanoparticles (AuNPs) is of significant interest because of the increased use of AuNPs in technological applications and the possibility that the acquisition of polyelectrolytes can lead to novel chemistry in downstream environments. We use all-atom molecular dynamics (MD) simulations to reveal the electric potential around citrate-capped gold nanoparticles (cit-AuNPs) and poly(allylamine hydrochloride) (PAH)-wrapped cit-AuNP (PAH-AuNP). We focus on the effects of the overall ionic strength and the shape of the electric potential. The ionic number distributions for both cit-AuNP and PAH-AuNP are calculated using MD simulations at varying salt concentrations (0, 0.001, 0.005, 0.01, 0.05, 0.1, and 0.2 M NaCl). The net charge distribution (Z(r)) around the nanoparticle is determined from the ionic number distribution observed in the simulations and allows for the calculation of the electric potential (ϕ(r)). We find that the magnitude of ϕ(r) decreases with increasing salt concentration and upon wrapping by PAH. Using a hydrodynamic radius (R_H) estimated from the literature and fits to the Debye-Hü̈ckel expression, we found and report the ζ potential for both cit-AuNP and PAH-AuNP at varying salt concentrations. For example, at 0.001 M NaCl, MD simulations suggest that ζ = -25.5 mV for cit-AuNP. Upon wrapping of cit-AuNP by one PAH chain, the resulting PAH-AuNP exhibits a reduced ζ potential (ζ = -8.6 mV). We also compare our MD simulation results for ϕ(r) to the classic Poisson-Boltzmann equation (PBE) approximation and the well-known Derjaguin-Landau-Verwey-Overbeek (DLVO) theory. We find agreement with the limiting regimes─with respect to surface charge, salt concentration and particle size─in which the assumptions of the PBE and DLVO theory are known to be satisfied.

Understanding the Adsorption of Peptides and Proteins onto PEGylated Gold Nanoparticles

Polyethylene glycol (PEG) surface conjugations are widely employed to render passivating properties to nanoparticles in biological applications. The benefits of surface passivation by PEG are reduced protein adsorption, diminished non-specific interactions, and improvement in pharmacokinetics. However, the limitations of PEG passivation remain an active area of research, and recent examples from the literature demonstrate how PEG passivation can fail. Here, we study the adsorption amount of biomolecules to PEGylated gold nanoparticles (AuNPs), focusing on how different protein properties influence binding. The AuNPs are PEGylated with three different sizes of conjugated PEG chains, and we examine interactions with proteins of different sizes, charges, and surface cysteine content. The experiments are carried out in vitro at physiologically relevant timescales to obtain the adsorption amounts and rates of each biomolecule on AuNP-PEGs of varying compositions. Our findings are relevant in understanding how protein size and the surface cysteine content affect binding, and our work reveals that cysteine residues can dramatically increase adsorption rates on PEGylated AuNPs. Moreover, shorter chain PEG molecules passivate the AuNP surface more effectively against all protein types.

Can One Define the Conductance of Amino Acids?

We studied the electron-transport properties of ten different amino acids and one dimer (di-methionine) using the mechanically controlled break-junction (MCBJ) technique. For methionine and cysteine, additional measurements were performed with the scanning tunneling microscope break-junction (STM-BJ) technique. By means of a statistical clustering technique, we identified several conductance groups for each of the molecules considered. Ab initio calculations revealed that the observed broad conductance distribution stems from the possibility of various binding geometries which can be formed during stretching combined with a multitude of possible conformational changes. The results suggest that it would be helpful to explore different experimental techniques such as recognition tunneling and conditions to help identify the nature of amino-acid-based junctions even further, for example, with the goal to establish a firm platform for their unambiguous recognition by tunneling break-junction experiments.

Doping hepta-alanine with tryptophan: A theoretical study of its effect on the electrical conductance of peptide-based single-molecule junctions

Motivated by a recent experiment [C. Guo et al., Proc. Natl. Acad. Sci. U. S. A. 113, 10785 (2016)], we carry out a theoretical study of electron transport through peptide-based single-molecule junctions. We analyze the pristine hepta-alanine and its functionalizations with a single tryptophan unit, which is placed in three different locations along the backbone. Contrary to expectations from the experiment on self-assembled monolayers, we find that insertion of tryptophan does not raise the electrical conductance and that the resulting peptides instead remain insulating in the framework of a coherent transport picture. The poor performance of these molecules as conductors can be ascribed to the strongly off-resonant transport and low electrode-molecule coupling of the frontier orbitals. Although the introduction of tryptophan increases the energy of the highest occupied molecular orbital (HOMO) of the peptides in the gas phase, the new HOMO states are localized on the tryptophan unit and therefore essentially do not contribute to coherent charge transport.

Electron Transport Through Homopeptides: Are They Really Good Conductors?

Motivated by recent experiments, we performed a theoretical study of electron transport through single-molecule junctions incorporating four kinds of homopeptides (based on alanine, glutamic acid, lysine, and tryptophan). Our results suggest that these molecules are rather insulating and operate in off-resonance tunneling as their main transport mechanism. We ascribe their poor performance as conductors to the high localization of their frontier orbitals. We found that binding scenarios in which side chains lie on the side of gold protuberances could give rise to an increase in conductance with respect to end-to-end binding configurations. These findings provide an insight into the conductance mechanism of the building blocks of proteins and identify key issues that need to be further investigated.

Ionic Liquid Anion Controlled Nanoscale Gold Morphology Grown at a Liquid Interface

Two different ionic liquids comprising the tetrabutylphosphonium cation ([P₄₄₄₄]) paired with the strongly coordinating anions 6-aminocaproate ([6-AC]) or taurinate ([tau]) were prepared and employed in an aqueous/organic liquid bilayer system to generate nanoscale gold by Au(OH)₄^- photoreduction. Generally, as the concentration of ionic liquid in the organic phase was increased, the resulting quasi-spherical gold nanoparticles were smaller in size and presented less aggregation, leading to marked increases in the catalytic efficiency for 4-nitrophenol reduction using borohydride. The diffusion of the ionic liquids across the liquid/liquid interface was also investigated, revealing partition coefficients of 6.0 and 7.6 for [P₄₄₄₄][6-AC] and [P₄₄₄₄][tau], respectively. Control studies elucidated that biphasic interfacial reduction was necessary to achieve stable nanoparticles possessing high catalytic activity. When the ionic liquid anion was instead replaced by the weakly coordinating bis(trifluoromethylsulfonyl)imide ([Tf₂N]), photoreduction of Au(OH)₄^- led to holey, wavy gold nanowires instead of spherical nanoparticles, indicating the dramatic morphological control exerted by the coordination strength of the ionic liquid anion. This strategy is straightforward and simple and opens up a number of intriguing avenues for controllably preparing plasmonic colloids for a range of applications from catalysis to optical sensing.