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Neufeld O, Nourbakhsh Z, Tancogne-Dejean N, Rubio A. Ab Initio Cluster Approach for High Harmonic Generation in Liquids. J Chem Theory Comput 2022; 18:4117-4126. [PMID: 35699241 PMCID: PMC9281394 DOI: 10.1021/acs.jctc.2c00235] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
High harmonic generation (HHG) takes place in all phases of matter. In gaseous atomic and molecular media, it has been extensively studied and is very well understood. In solids, research is ongoing, but a consensus is forming for the dominant microscopic HHG mechanisms. In liquids, on the other hand, no established theory yet exists, and approaches developed for gases and solids are generally inapplicable, hindering our current understanding. We develop here a powerful and reliable ab initio cluster-based approach for describing the nonlinear interactions between isotropic bulk liquids and intense laser pulses. The scheme is based on time-dependent density functional theory and utilizes several approximations that make it feasible yet accurate in realistic systems. We demonstrate our approach with HHG calculations in water, ammonia, and methane liquids and compare the characteristic response of polar and nonpolar liquids. We identify unique features in the HHG spectra of liquid methane that could be utilized for ultrafast spectroscopy of its chemical and physical properties, including a structural minimum at 15-17 eV that is associated solely with the liquid phase. Our results pave the way to accessible calculations of HHG in liquids and illustrate the unique nonlinear nature of liquid systems.
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Affiliation(s)
- Ofer Neufeld
- Max Planck Institute for the Structure and Dynamics of Matter and Center for Free-Electron Laser Science, Hamburg 22761, Germany
| | - Zahra Nourbakhsh
- Max Planck Institute for the Structure and Dynamics of Matter and Center for Free-Electron Laser Science, Hamburg 22761, Germany
| | - Nicolas Tancogne-Dejean
- Max Planck Institute for the Structure and Dynamics of Matter and Center for Free-Electron Laser Science, Hamburg 22761, Germany
| | - Angel Rubio
- Max Planck Institute for the Structure and Dynamics of Matter and Center for Free-Electron Laser Science, Hamburg 22761, Germany.,Center for Computational Quantum Physics (CCQ), The Flatiron Institute, New York, New York 10010, United States
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Tóbiás R, Árendás P, Császár AG. Normal-Mode Vibrational Analysis of Weakly Bound Oligomers at Constrained Stationary Points of Arbitrary Order. J Chem Theory Comput 2022; 18:1788-1798. [PMID: 35201747 DOI: 10.1021/acs.jctc.1c01148] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Following the full realization of the importance of noncovalent interactions, finding and characterizing stationary points (SP), of various order, for weakly bound oligomers have become important tasks for computational chemists. An efficient algorithm and an associated computer code, called oligoCGO, are described, facilitating constrained geometry optimization of oligomers of arbitrary structure and complexity and normal-mode vibrational analysis at nonstationary geometries. To minimize the adverse effects of nonzero forces on harmonic vibrational analyses at constrained stationary points (cSP), two residual gradient correction (RGC) schemes are proposed. RGC1, for which a rigorous justification is given, is based on ignoring the remaining forces in internal-coordinate space. RGC2 modifies the geometry of the cSP in a single Newton step and recalculates the Cartesian Hessian at this updated geometry. As demonstrated by 10 examples related to the water-water, water-methane, and methane-methane dimers as well as the methane trimer, without RGC the harmonic analysis of cSPs may result in even qualitatively incorrect results when compared to reference values obtained at the nearby unconstrained SPs (uSP). Both RGC protocols work exceedingly well, and the corrected harmonic wavenumbers of the cSPs are very close to their uSP counterparts.
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Affiliation(s)
- Roland Tóbiás
- Institute of Chemistry, ELTE Eötvös Loránd University, Budapest 1117, Hungary.,MTA-ELTE Complex Chemical Systems Research Group, Budapest 1117, Hungary
| | - Péter Árendás
- Institute of Chemistry, ELTE Eötvös Loránd University, Budapest 1117, Hungary.,MTA-ELTE Complex Chemical Systems Research Group, Budapest 1117, Hungary.,Budapest Business School, Budapest 1149, Hungary
| | - Attila G Császár
- Institute of Chemistry, ELTE Eötvös Loránd University, Budapest 1117, Hungary.,MTA-ELTE Complex Chemical Systems Research Group, Budapest 1117, Hungary
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Abstract
Calculations on the Cu24(m-BDC)24 (m-BDC = 1,3-benzenedicarboxylate) polyoxometalate (POM) cage with 0, 12, 24, and 40 methane molecules inside were made using the M06 exchange/correlation functional. During filling of the cage with 40 CH4 molecules, the 12 strongest binding CH4 molecules are those to the coordination unsaturated sites (CUS) to the inwardly directed Cu(+2) centers via agostic interactions. The next 12 CH4 molecules are less tightly bound followed by the next 16 CH4 molecules with average binding energies of 8.27, 7.88, and 7.36 kcal/mol per CH4, respectively. A section of the Cu24(m-BDC)24 cage was taken with the formula Cu4(m-BDC)(BC)6 (BC = benezenecarboxylate) in order to estimate zero-point, thermal, and entropy corrections of the larger cage. Estimating free energies at 1 bar, the Cu24(m-BDC)24 POM is predicted to lose 16, 12, and 12 CH4 molecules at 67, 123, and 171 °C, respectively. The 40CH4@Cu24(m-BDC)24 cage, which is isostructural to the main cavity of HKUST-1 with 40 CH4 molecules inside, is predicted to have a loading of 224 cm3(STP) cm-3 at 1 bar.
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Affiliation(s)
- Michael L McKee
- Department of Chemistry and Biochemistry , Auburn University , Auburn , Alabama 36849 , United States
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Zaag AS, Yazidi O, Jaidane NE, Ross MW, Castleman AW, Al Mogren MM, Linguerri R, Hochlaf M. Structure, Reactivity, and Fragmentation of Small Multi-Charged Methane Clusters. J Phys Chem A 2016; 120:1669-76. [DOI: 10.1021/acs.jpca.6b00734] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- A. Sanaa Zaag
- Laboratoire de Spectroscopie
Atomique, Moléculaire et Applications - LSAMA, Université de Tunis Al Manar, Tunis, Tunisia
| | - O. Yazidi
- Laboratoire de Spectroscopie
Atomique, Moléculaire et Applications - LSAMA, Université de Tunis Al Manar, Tunis, Tunisia
| | - N.-E. Jaidane
- Laboratoire de Spectroscopie
Atomique, Moléculaire et Applications - LSAMA, Université de Tunis Al Manar, Tunis, Tunisia
| | - M. W. Ross
- Departments of Chemistry
and Physics, The Pennsylvania State University, University Park, Pennsylvania 16802, United States
| | - A. W. Castleman
- Departments of Chemistry
and Physics, The Pennsylvania State University, University Park, Pennsylvania 16802, United States
| | - M. M. Al Mogren
- Chemistry
Department, Faculty
of Science, King Saud University, P.O. Box 2455, Riyadh 11451, Kingdom of Saudi Arabia
| | - R. Linguerri
- Laboratoire Modélisation
et Simulation Multi-Echelle, MSME UMR 8208 CNRS, Université Paris-Est, 5 bd Descartes, 77454 Marne-la-Vallée, France
| | - M. Hochlaf
- Laboratoire Modélisation
et Simulation Multi-Echelle, MSME UMR 8208 CNRS, Université Paris-Est, 5 bd Descartes, 77454 Marne-la-Vallée, France
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Cunha WF, Gargano R, Garcia E, Politi JRS, Albernaz AF, Martins JBL. Rovibrational energy and spectroscopic constant calculations of CH 4 ⋯ CH 4, CH 4 ⋯ H 2 O, CH 4 ⋯ CHF 3, and H 2 O ⋯ CHF 3 dimers. J Mol Model 2014; 20:2298. [DOI: 10.1007/s00894-014-2298-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2014] [Accepted: 05/05/2014] [Indexed: 11/28/2022]
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7
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Shvab I, Sadus RJ. Thermodynamic properties and diffusion of water + methane binary mixtures. J Chem Phys 2014; 140:104505. [DOI: 10.1063/1.4867282] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Torres E, DiLabio GA. Density-Functional Theory with Dispersion-Correcting Potentials for Methane: Bridging the Efficiency and Accuracy Gap between High-Level Wave Function and Classical Molecular Mechanics Methods. J Chem Theory Comput 2013; 9:3342-9. [DOI: 10.1021/ct4003114] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Edmanuel Torres
- National Institute for Nanotechnology, National Research Council of Canada, 11421 Saskatchewan
Drive, Edmonton, Alberta, Canada T6G 2M9
- Faculty of Basic Sciences, Universidad Technológica de Bolívar,
Cartagena, Colombia
| | - Gino A. DiLabio
- National Institute for Nanotechnology, National Research Council of Canada, 11421 Saskatchewan
Drive, Edmonton, Alberta, Canada T6G 2M9
- Department
of Physics, University of Alberta, Edmonton
Alberta, Canada T6G
2E1
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Su X, Tian P, Fan D, Xia Q, Yang Y, Xu S, Zhang L, Zhang Y, Wang D, Liu Z. Synthesis of DNL-6 with a high concentration of Si (4 Al) environments and its application in CO(2) separation. CHEMSUSCHEM 2013; 6:911-918. [PMID: 23606439 DOI: 10.1002/cssc.201200907] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2012] [Indexed: 06/02/2023]
Abstract
The synthesis of DNL-6 with a high concentration of Si (4 Al) environments [Si/(Si+Al+P)=0.182 mol, denoted as M-DNL-6] is demonstrated. This represents the highest reported concentration of such environments in silicoaluminophosphate (SAPO) molecular sieves. Adsorption studies show that the high Si (4 Al) content in M-DNL-6, with an increased number of Brønsted acid sites in the framework, greatly promotes the adsorption of CO(2). M-DNL-6 exhibits a large CO(2) uptake capacity of up to 6.18 mmol g(-1) at 273 K and 101 kPa, and demonstrates high ratios of CO(2)/CH(4) and CO(2)/N(2) separation. From breakthrough and cycling experiments, M-DNL-6 demonstrates the ability to completely separate CO(2) from CH(4) or N(2) with a dynamic capacity of approximately 8.0 wt % before breakthrough. Importantly, the adsorbed CO(2) is easily released from the adsorbent through a simple gas purging operation at room temperature to regain 95 % of the original adsorption capacity. These results suggest that M-DNL-6 can be used as a potential adsorbent for CO(2) capture in pressure swing adsorption processes.
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Affiliation(s)
- Xiong Su
- Dalian National Laboratory for Clean Energy, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian 116023, PR China
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Takeuchi H. Structural Features of Small Benzene Clusters (C6H6)n (n ≤ 30) As Investigated with the All-Atom OPLS Potential. J Phys Chem A 2012; 116:10172-81. [DOI: 10.1021/jp305965r] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Affiliation(s)
- Hiroshi Takeuchi
- Division of Chemistry,
Graduate School of Science, Hokkaido University, 060-0810 Sapporo, Japan
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