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Synthesis, structure and antibacterial activity of dinitrosyl iron complexes (DNICs) dimers functionalized with 5-(nitrophenyl) -4-H-1,2,4-triazole-3-thiolyls. Polyhedron 2022. [DOI: 10.1016/j.poly.2022.115822] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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2
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Aldoshin SM, Bozhenko KV, Utenyshev AN, Sanina NA, Emel'yanova NS. Formation of supramolecular synthons in the crystalline structure of the dinitrosyl iron complexes with aliphatic thiourea ligands. J Mol Model 2020; 26:330. [PMID: 33150462 DOI: 10.1007/s00894-020-04594-z] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2020] [Accepted: 10/28/2020] [Indexed: 11/28/2022]
Abstract
By means of quantum-chemical calculations using Density Functional Theory, Quantum Theory of Atoms in Molecules, and Natural Bond Orbitals, theoretical modeling of intermolecular interactions has been performed for eight nitrosyl iron complexes with aliphatic thiourea ligands, which was aimed at discovering the presence of the NO…NO intermolecular interactions and at studying the possibility of the NO…NO supramolecular synthon formation in their crystalline structure for explaining their unusual magnetic properties. Such interactions were shown to be either stacking or T-like interactions, depending on the relative position of nitrosyl ligands and energetically corresponding to Van der Waals bonds. Mainly LP(O), π (NO), and π*(NO) orbitals in various combinations participate in their formation, with π (FeN), π(FeО), and LP(N) orbitals hardly being participants. The involvement of the NO bond orbitals results in quenching the orbital moment of the NO groups. If NO groups are isolated from intermolecular interactions, they can preserve the unquenched orbital moment.
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Affiliation(s)
- S M Aldoshin
- Institute of Problems of Chemical Physics of the Russian Academy of Sciences (IPCP RAS), 142432 Chernogolovka Region, prosp. Acad. Semenova, 1, Moscow, Russian Federation.,Faculty of Fundamental Physicochemical Engineering, Moscow State University, Leninskie Gori, 1, Moscow, Russian Federation, 119991
| | - K V Bozhenko
- Institute of Problems of Chemical Physics of the Russian Academy of Sciences (IPCP RAS), 142432 Chernogolovka Region, prosp. Acad. Semenova, 1, Moscow, Russian Federation.,Faculty of Fundamental Physicochemical Engineering, Moscow State University, Leninskie Gori, 1, Moscow, Russian Federation, 119991
| | - A N Utenyshev
- Institute of Problems of Chemical Physics of the Russian Academy of Sciences (IPCP RAS), 142432 Chernogolovka Region, prosp. Acad. Semenova, 1, Moscow, Russian Federation
| | - N A Sanina
- Institute of Problems of Chemical Physics of the Russian Academy of Sciences (IPCP RAS), 142432 Chernogolovka Region, prosp. Acad. Semenova, 1, Moscow, Russian Federation.,Faculty of Fundamental Physicochemical Engineering, Moscow State University, Leninskie Gori, 1, Moscow, Russian Federation, 119991.,Scientific and Educational Center "Medical Chemistry" of Moscow State Regional University, 141014 Mytishchi Region, st. Vera Voloshina, 24, Moscow, Russian Federation
| | - N S Emel'yanova
- Institute of Problems of Chemical Physics of the Russian Academy of Sciences (IPCP RAS), 142432 Chernogolovka Region, prosp. Acad. Semenova, 1, Moscow, Russian Federation. .,Faculty of Fundamental Physicochemical Engineering, Moscow State University, Leninskie Gori, 1, Moscow, Russian Federation, 119991.
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Emel’yanova NS, Pokidova OV, Sanina NA, Aldoshin SM. TDDFT-modeling of theoretical UV spectra of binuclear sulfur-containing iron nitrosyl clusters and products of their decomposition. Russ Chem Bull 2020. [DOI: 10.1007/s11172-019-2687-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Pokidova ОV, Luzhkov VB, Emel'yanova NS, Krapivin VB, Kotelnikov AI, Sanina NA, Aldoshin SM. Effect of albumin on the transformation of dinitrosyl iron complexes with thiourea ligands. Dalton Trans 2020; 49:12674-12685. [DOI: 10.1039/d0dt02452j] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
BSA binds the Fe(NO)2+ fragment of DNIC and multiple molecules of [Fe(SC(NH2)2)2(NO)2]+ that prolongs NO donation by this DNIC.
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Affiliation(s)
- Оlesya V. Pokidova
- Institute of Problems of Chemical Physics of the Russian Academy of Sciences (IPCP RAS)
- Moscow Region
- Russian Federation
| | - Victor B. Luzhkov
- Institute of Problems of Chemical Physics of the Russian Academy of Sciences (IPCP RAS)
- Moscow Region
- Russian Federation
- Faculty of Fundamental Physicochemical Engineering
- Lomonosov Moscow State University
| | - Nina S. Emel'yanova
- Institute of Problems of Chemical Physics of the Russian Academy of Sciences (IPCP RAS)
- Moscow Region
- Russian Federation
- Faculty of Fundamental Physicochemical Engineering
- Lomonosov Moscow State University
| | - Vladimir B. Krapivin
- Institute of Problems of Chemical Physics of the Russian Academy of Sciences (IPCP RAS)
- Moscow Region
- Russian Federation
| | - Alexander I. Kotelnikov
- Institute of Problems of Chemical Physics of the Russian Academy of Sciences (IPCP RAS)
- Moscow Region
- Russian Federation
- Faculty of Fundamental Physicochemical Engineering
- Lomonosov Moscow State University
| | - Natalia A. Sanina
- Institute of Problems of Chemical Physics of the Russian Academy of Sciences (IPCP RAS)
- Moscow Region
- Russian Federation
- Faculty of Fundamental Physicochemical Engineering
- Lomonosov Moscow State University
| | - Sergey M. Aldoshin
- Institute of Problems of Chemical Physics of the Russian Academy of Sciences (IPCP RAS)
- Moscow Region
- Russian Federation
- Faculty of Fundamental Physicochemical Engineering
- Lomonosov Moscow State University
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Akentieva NP, Sanina NA, Gizatullin AR, Shkondina NI, Prikhodchenko TR, Shram SI, Zhelev N, Aldoshin SM. Cytoprotective Effects of Dinitrosyl Iron Complexes on Viability of Human Fibroblasts and Cardiomyocytes. Front Pharmacol 2019; 10:1277. [PMID: 31780929 PMCID: PMC6859909 DOI: 10.3389/fphar.2019.01277] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2019] [Accepted: 10/07/2019] [Indexed: 12/29/2022] Open
Abstract
Nitric oxide (NO) is an important signaling molecule that plays a key role in maintaining vascular homeostasis. Dinitrosyl iron complexes (DNICs) generating NO are widely used to treat cardiovascular diseases. However, the involvement of DNICs in the metabolic processes of the cell, their protective properties in doxorubicin-induced toxicity remain to be clarified. Here, we found that novel class of mononuclear DNICs with functional sulfur-containing ligands enhanced the cell viability of human lung fibroblasts and rat cardiomyocytes. Moreover, DNICs demonstrated remarkable protection against doxorubicin-induced toxicity in fibroblasts and in rat cardiomyocytes (H9c2 cells). Data revealed that the DNICs compounds modulate the mitochondria function by decreasing the mitochondrial membrane potential (ΔΨm). Results of flow cytometry showed that DNICs were not affected the proliferation, growth of fibroblasts. In addition, this study showed that DNICs did not affect glutathione levels and the formation of reactive oxygen species in cells. Moreover, results indicated that DNICs maintained the ATP equilibrium in cells. Taken together, these findings show that DNICs have protective properties in vitro. It was further suggested that DNICs may be uncouplers of oxidative phosphorylation in mitochondria and protective mechanism is mainly provided by the leakage of excess charge through the mitochondrial membrane. It is assumed that the DNICs have the therapeutic potential for treating cardiovascular diseases and for decreasing of chemotherapy-induced cardiotoxicity in cancer survivors.
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Affiliation(s)
- Natalia Pavlovna Akentieva
- Laboratory Biochemical and Cellular Studies, Department of Kinetics of Chemical and Biological Processes, Institute of Problems of Chemical Physics, Russian Academy of Sciences, Chernogolovka, Russia
- Laboratory of Toxicology and Experimental Chemotherapy, Moscow State Regional University, Moscow, Russia
- Faculty of Medicine, Karabük University, Karabük, Turkey
| | - Natalia Alekseevna Sanina
- Laboratory of Structural Chemistry, Department of Structure of Matter, Institute of Problems of Chemical Physics, Russian Academy of Sciences, Chernogolovka, Russia
- Faculty of fundamental physical and chemical engineering, Lomonosov Moscow State University, Moscow, Russia
| | - Artur Rasimovich Gizatullin
- Laboratory Biochemical and Cellular Studies, Department of Kinetics of Chemical and Biological Processes, Institute of Problems of Chemical Physics, Russian Academy of Sciences, Chernogolovka, Russia
| | - Natalia Ivanovna Shkondina
- Laboratory Biochemical and Cellular Studies, Department of Kinetics of Chemical and Biological Processes, Institute of Problems of Chemical Physics, Russian Academy of Sciences, Chernogolovka, Russia
| | - Tatyana Romanovna Prikhodchenko
- Laboratory Biochemical and Cellular Studies, Department of Kinetics of Chemical and Biological Processes, Institute of Problems of Chemical Physics, Russian Academy of Sciences, Chernogolovka, Russia
| | - Stanislav Ivanovich Shram
- Neuropharmacology Sector, Institute of Molecular Genetics, Russian Academy of Sciences, Moscow, Russia
| | - Nikolai Zhelev
- School of Medicine, University of Dundee, Dundee, United Kingdom
- Medical University Plovdiv, Plovdiv, Bulgaria
| | - Sergei Michailovich Aldoshin
- Laboratory of Structural Chemistry, Department of Structure of Matter, Institute of Problems of Chemical Physics, Russian Academy of Sciences, Chernogolovka, Russia
- Faculty of fundamental physical and chemical engineering, Lomonosov Moscow State University, Moscow, Russia
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Gallmeier EA, Gallmeier KM, McFarlane J, Morales-Rodriguez ME. Real time monitoring of the chemistry of hydroxylamine nitrate and iron as surrogates for nuclear materials processing. SEP SCI TECHNOL 2019. [DOI: 10.1080/01496395.2019.1606829] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- Esther A. Gallmeier
- Isotope and Fuel Cycle Technology Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA
| | - Katharina M. Gallmeier
- Isotope and Fuel Cycle Technology Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA
| | - Joanna McFarlane
- Isotope and Fuel Cycle Technology Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA
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Redox reactions of cationic nitrosyl iron complexes with thiourea and its aliphatic derivatives: The experiment and DFT investigation. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2018.12.112] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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Emel´yanova NS, Shmatko NY, Sanina NA, Aldoshin SM. Quantum chemical modeling of possible reactions of mononuclear iron nitrosyl complex [Fe(SC(NH2)2)2(NO)2]Cl•H2O in an aqueous solution. Russ Chem Bull 2018. [DOI: 10.1007/s11172-017-1955-9] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Emel’yanova NS, Sanina NA, Aldoshin SM. Quantum chemical approaches to the study of Fe—S bond in Roussin’s red esters: replacement of functional ligands by glutathione. Russ Chem Bull 2017. [DOI: 10.1007/s11172-016-1534-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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Experimental and quantum chemical modeling of the influence of the pH of the medium on the NO-donor activity of the mononuclear nitrosyl iron complex [Fe(SC(NH2)2)2(NO)2]Сl•H2O. Russ Chem Bull 2016. [DOI: 10.1007/s11172-015-1162-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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Amraoui NE, Hammoutène D. DFT study and topological analysis of the bonding in DNA Hoogsteen-type base pairs. JOURNAL OF THEORETICAL & COMPUTATIONAL CHEMISTRY 2015. [DOI: 10.1142/s0219633615500479] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The purpose of our work is to characterize and present a theoretical comparative study of a variety of compounds based on DNA base pairs linked with some transition metal ions in gas phase: C–M–G (Cytosine–metal–Guanine) where [Formula: see text](I), Zn(II), Cd(II) and A–M–T (Adenine–metal–Thyminate) where [Formula: see text](II), Ru(I), Ni(I), Y(II), Zn(I), Cd(I), Cu(II). Geometry optimization and frequency calculations were carried out at DFT/ZORA/BLYP-D/TZ2P level. M–N and M–O bonds were investigated with the quantum chemical topology (QCT): Quantum theory of atoms in molecules (QTAIM) and electron localization functions (ELF). The hydrogen bonds: N10–H[Formula: see text]O7 for A–M–T complexes and N7–H[Formula: see text]O10 for C–M–T ones were visualized and discussed, QTAIM and ELF prove the existence of O7–H[Formula: see text]N10 hydrogen bond for some A–M–T systems, since the bond critical point (BCP) of N7–H having [Formula: see text], so it has a covalent character confirming the existence of a tautomer process of these complexes. Bonding energy [Formula: see text], Pauli repulsion [Formula: see text], electrostatic [Formula: see text], and orbital [Formula: see text] interactions were represented and compared together. Hirschfeld’s charges showed the existence of charge transfer process in the bridge moieties. It seems that, in contrast to natural base pairs that are stabilized by hydrogen bonding, Hoogsteen-type base pairs are held together by coordinative bond with metal ions.
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Affiliation(s)
- Nour Elyakine Amraoui
- Laboratoire de Thermodynamique et de Modélisation Moléculaire (LTMM), Faculté de Chimie, USTHB BP 32, Elalia 16111 Bab Ezzouar, Alger, Algeria
| | - Dalila Hammoutène
- Laboratoire de Thermodynamique et de Modélisation Moléculaire (LTMM), Faculté de Chimie, USTHB BP 32, Elalia 16111 Bab Ezzouar, Alger, Algeria
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