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Liu Q, Zhang L, Chen Z, He Y, Huang Y, Qiu C, Zhu C, Zhou D, Gan Z, Gao X, Wan G. Metabolic Profiling of Cochlear Organoids Identifies α-Ketoglutarate and NAD + as Limiting Factors for Hair Cell Reprogramming. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2024; 11:e2308032. [PMID: 38993037 PMCID: PMC11425867 DOI: 10.1002/advs.202308032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2023] [Revised: 04/11/2024] [Indexed: 07/13/2024]
Abstract
Cochlear hair cells are the sensory cells responsible for transduction of acoustic signals. In mammals, damaged hair cells do not regenerate, resulting in permanent hearing loss. Reprogramming of the surrounding supporting cells to functional hair cells represent a novel strategy to hearing restoration. However, cellular processes governing the efficient and functional hair cell reprogramming are not completely understood. Employing the mouse cochlear organoid system, detailed metabolomic characterizations of the expanding and differentiating organoids are performed. It is found that hair cell differentiation is associated with increased mitochondrial electron transport chain (ETC) activity and reactive oxidative species generation. Transcriptome and metabolome analyses indicate reduced expression of oxidoreductases and tricyclic acid (TCA) cycle metabolites. The metabolic decoupling between ETC and TCA cycle limits the availability of the key metabolic cofactors, α-ketoglutarate (α-KG) and nicotinamide adenine dinucleotide (NAD+). Reduced expression of NAD+ in cochlear supporting cells by PGC1α deficiency further impairs hair cell reprogramming, while supplementation of α-KG and NAD+ promotes hair cell reprogramming both in vitro and in vivo. These findings reveal metabolic rewiring as a central cellular process during hair cell differentiation, and highlight the insufficiency of key metabolites as a metabolic barrier for efficient hair cell reprogramming.
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Affiliation(s)
- Qing Liu
- State Key Laboratory of Pharmaceutical BiotechnologyMOE Key Laboratory of Model Animal for Disease Study and Jiangsu Provincial Key Medical Discipline (Laboratory)Department of Otolaryngology Head and Neck SurgeryAffiliated Drum Tower Hospital of Medical SchoolModel Animal Research Center of Medical SchoolNanjing UniversityNanjing210032China
- State Key Laboratory of Pharmaceutical BiotechnologyMOE Key Laboratory of Model Animal for Disease Study and Jiangsu Key Laboratory of Molecular MedicineModel Animal Research Center of Medical SchoolNanjing UniversityNanjing210032China
- Research Institute of OtolaryngologyNo. 321 Zhongshan RoadNanjing210008China
| | - Linqing Zhang
- State Key Laboratory of Pharmaceutical BiotechnologyMOE Key Laboratory of Model Animal for Disease Study and Jiangsu Provincial Key Medical Discipline (Laboratory)Department of Otolaryngology Head and Neck SurgeryAffiliated Drum Tower Hospital of Medical SchoolModel Animal Research Center of Medical SchoolNanjing UniversityNanjing210032China
- State Key Laboratory of Pharmaceutical BiotechnologyMOE Key Laboratory of Model Animal for Disease Study and Jiangsu Key Laboratory of Molecular MedicineModel Animal Research Center of Medical SchoolNanjing UniversityNanjing210032China
| | - Zhen Chen
- State Key Laboratory of Pharmaceutical BiotechnologyMOE Key Laboratory of Model Animal for Disease Study and Jiangsu Provincial Key Medical Discipline (Laboratory)Department of Otolaryngology Head and Neck SurgeryAffiliated Drum Tower Hospital of Medical SchoolModel Animal Research Center of Medical SchoolNanjing UniversityNanjing210032China
- State Key Laboratory of Pharmaceutical BiotechnologyMOE Key Laboratory of Model Animal for Disease Study and Jiangsu Key Laboratory of Molecular MedicineModel Animal Research Center of Medical SchoolNanjing UniversityNanjing210032China
| | - Yihan He
- State Key Laboratory of Pharmaceutical BiotechnologyMOE Key Laboratory of Model Animal for Disease Study and Jiangsu Provincial Key Medical Discipline (Laboratory)Department of Otolaryngology Head and Neck SurgeryAffiliated Drum Tower Hospital of Medical SchoolModel Animal Research Center of Medical SchoolNanjing UniversityNanjing210032China
- State Key Laboratory of Pharmaceutical BiotechnologyMOE Key Laboratory of Model Animal for Disease Study and Jiangsu Key Laboratory of Molecular MedicineModel Animal Research Center of Medical SchoolNanjing UniversityNanjing210032China
| | - Yuhang Huang
- State Key Laboratory of Pharmaceutical BiotechnologyMOE Key Laboratory of Model Animal for Disease Study and Jiangsu Provincial Key Medical Discipline (Laboratory)Department of Otolaryngology Head and Neck SurgeryAffiliated Drum Tower Hospital of Medical SchoolModel Animal Research Center of Medical SchoolNanjing UniversityNanjing210032China
- State Key Laboratory of Pharmaceutical BiotechnologyMOE Key Laboratory of Model Animal for Disease Study and Jiangsu Key Laboratory of Molecular MedicineModel Animal Research Center of Medical SchoolNanjing UniversityNanjing210032China
| | - Cui Qiu
- State Key Laboratory of Pharmaceutical BiotechnologyMOE Key Laboratory of Model Animal for Disease Study and Jiangsu Provincial Key Medical Discipline (Laboratory)Department of Otolaryngology Head and Neck SurgeryAffiliated Drum Tower Hospital of Medical SchoolModel Animal Research Center of Medical SchoolNanjing UniversityNanjing210032China
- State Key Laboratory of Pharmaceutical BiotechnologyMOE Key Laboratory of Model Animal for Disease Study and Jiangsu Key Laboratory of Molecular MedicineModel Animal Research Center of Medical SchoolNanjing UniversityNanjing210032China
| | - Chengwen Zhu
- State Key Laboratory of Pharmaceutical BiotechnologyMOE Key Laboratory of Model Animal for Disease Study and Jiangsu Provincial Key Medical Discipline (Laboratory)Department of Otolaryngology Head and Neck SurgeryAffiliated Drum Tower Hospital of Medical SchoolModel Animal Research Center of Medical SchoolNanjing UniversityNanjing210032China
- Research Institute of OtolaryngologyNo. 321 Zhongshan RoadNanjing210008China
| | - Danxia Zhou
- State Key Laboratory of Pharmaceutical BiotechnologyMOE Key Laboratory of Model Animal for Disease Study and Jiangsu Key Laboratory of Molecular MedicineModel Animal Research Center of Medical SchoolNanjing UniversityNanjing210032China
| | - Zhenji Gan
- State Key Laboratory of Pharmaceutical BiotechnologyMOE Key Laboratory of Model Animal for Disease Study and Jiangsu Key Laboratory of Molecular MedicineModel Animal Research Center of Medical SchoolNanjing UniversityNanjing210032China
| | - Xia Gao
- State Key Laboratory of Pharmaceutical BiotechnologyMOE Key Laboratory of Model Animal for Disease Study and Jiangsu Provincial Key Medical Discipline (Laboratory)Department of Otolaryngology Head and Neck SurgeryAffiliated Drum Tower Hospital of Medical SchoolModel Animal Research Center of Medical SchoolNanjing UniversityNanjing210032China
- Research Institute of OtolaryngologyNo. 321 Zhongshan RoadNanjing210008China
| | - Guoqiang Wan
- State Key Laboratory of Pharmaceutical BiotechnologyMOE Key Laboratory of Model Animal for Disease Study and Jiangsu Provincial Key Medical Discipline (Laboratory)Department of Otolaryngology Head and Neck SurgeryAffiliated Drum Tower Hospital of Medical SchoolModel Animal Research Center of Medical SchoolNanjing UniversityNanjing210032China
- State Key Laboratory of Pharmaceutical BiotechnologyMOE Key Laboratory of Model Animal for Disease Study and Jiangsu Key Laboratory of Molecular MedicineModel Animal Research Center of Medical SchoolNanjing UniversityNanjing210032China
- Research Institute of OtolaryngologyNo. 321 Zhongshan RoadNanjing210008China
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Pyott SJ, Pavlinkova G, Yamoah EN, Fritzsch B. Harmony in the Molecular Orchestra of Hearing: Developmental Mechanisms from the Ear to the Brain. Annu Rev Neurosci 2024; 47:1-20. [PMID: 38360566 DOI: 10.1146/annurev-neuro-081423-093942] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/17/2024]
Abstract
Auditory processing in mammals begins in the peripheral inner ear and extends to the auditory cortex. Sound is transduced from mechanical stimuli into electrochemical signals of hair cells, which relay auditory information via the primary auditory neurons to cochlear nuclei. Information is subsequently processed in the superior olivary complex, lateral lemniscus, and inferior colliculus and projects to the auditory cortex via the medial geniculate body in the thalamus. Recent advances have provided valuable insights into the development and functioning of auditory structures, complementing our understanding of the physiological mechanisms underlying auditory processing. This comprehensive review explores the genetic mechanisms required for auditory system development from the peripheral cochlea to the auditory cortex. We highlight transcription factors and other genes with key recurring and interacting roles in guiding auditory system development and organization. Understanding these gene regulatory networks holds promise for developing novel therapeutic strategies for hearing disorders, benefiting millions globally.
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Affiliation(s)
- Sonja J Pyott
- Department of Otorhinolaryngology and Head and Neck Surgery, University Medical Center Groningen, Graduate School of Medical Sciences, and Research School of Behavioral and Cognitive Neurosciences, University of Groningen, Groningen, The Netherlands
| | - Gabriela Pavlinkova
- Laboratory of Molecular Pathogenetics, Institute of Biotechnology, Czech Academy of Sciences, Vestec, Czechia
| | - Ebenezer N Yamoah
- Department of Physiology and Cell Biology, School of Medicine, University of Nevada, Reno, Nevada, USA
| | - Bernd Fritzsch
- Department of Neurological Sciences, University of Nebraska Medical Center, Omaha, Nebraska, USA;
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Lipovsek M. Comparative biology of the amniote vestibular utricle. Hear Res 2024; 448:109035. [PMID: 38763033 DOI: 10.1016/j.heares.2024.109035] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/31/2024] [Revised: 05/09/2024] [Accepted: 05/13/2024] [Indexed: 05/21/2024]
Abstract
The sensory epithelia of the auditory and vestibular systems of vertebrates have shared developmental and evolutionary histories. However, while the auditory epithelia show great variation across vertebrates, the vestibular sensory epithelia appear seemingly more conserved. An exploration of the current knowledge of the comparative biology of the amniote utricle, a vestibular sensory epithelium that senses linear acceleration, shows interesting instances of variability between birds and mammals. The distribution of sensory hair cell types, the position of the line of hair bundle polarity reversal and the properties of supporting cells show marked differences, likely impacting vestibular function and hair cell regeneration potential.
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Affiliation(s)
- Marcela Lipovsek
- Ear Institute, Faculty of Brain Sciences, University College London, London, UK.
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Minařík M, Modrell MS, Gillis JA, Campbell AS, Fuller I, Lyne R, Micklem G, Gela D, Pšenička M, Baker CVH. Identification of multiple transcription factor genes potentially involved in the development of electrosensory versus mechanosensory lateral line organs. Front Cell Dev Biol 2024; 12:1327924. [PMID: 38562141 PMCID: PMC10982350 DOI: 10.3389/fcell.2024.1327924] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2023] [Accepted: 02/19/2024] [Indexed: 04/04/2024] Open
Abstract
In electroreceptive jawed vertebrates, embryonic lateral line placodes give rise to electrosensory ampullary organs as well as mechanosensory neuromasts. Previous reports of shared gene expression suggest that conserved mechanisms underlie electroreceptor and mechanosensory hair cell development and that electroreceptors evolved as a transcriptionally related "sister cell type" to hair cells. We previously identified only one transcription factor gene, Neurod4, as ampullary organ-restricted in the developing lateral line system of a chondrostean ray-finned fish, the Mississippi paddlefish (Polyodon spathula). The other 16 transcription factor genes we previously validated in paddlefish were expressed in both ampullary organs and neuromasts. Here, we used our published lateral line organ-enriched gene-set (arising from differential bulk RNA-seq in late-larval paddlefish), together with a candidate gene approach, to identify 25 transcription factor genes expressed in the developing lateral line system of a more experimentally tractable chondrostean, the sterlet (Acipenser ruthenus, a small sturgeon), and/or that of paddlefish. Thirteen are expressed in both ampullary organs and neuromasts, consistent with conservation of molecular mechanisms. Seven are electrosensory-restricted on the head (Irx5, Irx3, Insm1, Sp5, Satb2, Mafa and Rorc), and five are the first-reported mechanosensory-restricted transcription factor genes (Foxg1, Sox8, Isl1, Hmx2 and Rorb). However, as previously reported, Sox8 is expressed in ampullary organs as well as neuromasts in a catshark (Scyliorhinus canicula), suggesting the existence of lineage-specific differences between cartilaginous and ray-finned fishes. Overall, our results support the hypothesis that ampullary organs and neuromasts develop via largely conserved transcriptional mechanisms, and identify multiple transcription factors potentially involved in the formation of electrosensory versus mechanosensory lateral line organs.
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Affiliation(s)
- Martin Minařík
- Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, United Kingdom
| | - Melinda S. Modrell
- Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, United Kingdom
| | - J. Andrew Gillis
- Department of Zoology, University of Cambridge, Cambridge, United Kingdom
- Josephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, MA, United States
| | - Alexander S. Campbell
- Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, United Kingdom
| | - Isobel Fuller
- Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, United Kingdom
| | - Rachel Lyne
- Department of Genetics, University of Cambridge, Cambridge, United Kingdom
| | - Gos Micklem
- Department of Genetics, University of Cambridge, Cambridge, United Kingdom
| | - David Gela
- Faculty of Fisheries and Protection of Waters, Research Institute of Fish Culture and Hydrobiology, University of South Bohemia in České Budějovice, Vodňany, Czechia
| | - Martin Pšenička
- Faculty of Fisheries and Protection of Waters, Research Institute of Fish Culture and Hydrobiology, University of South Bohemia in České Budějovice, Vodňany, Czechia
| | - Clare V. H. Baker
- Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, United Kingdom
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Li X, Ren M, Gu Y, Zhu T, Zhang Y, Li J, Li C, Wang G, Song L, Bi Z, Liu Z. In situ regeneration of inner hair cells in the damaged cochlea by temporally regulated co-expression of Atoh1 and Tbx2. Development 2023; 150:dev201888. [PMID: 38078650 DOI: 10.1242/dev.201888] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2023] [Accepted: 11/02/2023] [Indexed: 12/18/2023]
Abstract
Cochlear inner hair cells (IHCs) are primary sound receptors, and are therefore a target for developing treatments for hearing impairment. IHC regeneration in vivo has been widely attempted, although not yet in the IHC-damaged cochlea. Moreover, the extent to which new IHCs resemble wild-type IHCs remains unclear, as is the ability of new IHCs to improve hearing. Here, we have developed an in vivo mouse model wherein wild-type IHCs were pre-damaged and nonsensory supporting cells were transformed into IHCs by ectopically expressing Atoh1 transiently and Tbx2 permanently. Notably, the new IHCs expressed the functional marker vGlut3 and presented similar transcriptomic and electrophysiological properties to wild-type IHCs. Furthermore, the formation efficiency and maturity of new IHCs were higher than those previously reported, although marked hearing improvement was not achieved, at least partly due to defective mechanoelectrical transduction (MET) in new IHCs. Thus, we have successfully regenerated new IHCs resembling wild-type IHCs in many respects in the damaged cochlea. Our findings suggest that the defective MET is a critical barrier that prevents the restoration of hearing capacity and should thus facilitate future IHC regeneration studies.
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Affiliation(s)
- Xiang Li
- Institute of Neuroscience, State Key Laboratory of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai 200031, China
| | - Minhui Ren
- Institute of Neuroscience, State Key Laboratory of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai 200031, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yunpeng Gu
- Institute of Neuroscience, State Key Laboratory of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai 200031, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Tong Zhu
- Institute of Neuroscience, State Key Laboratory of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai 200031, China
| | - Yu Zhang
- Department of Otolaryngology-Head and Neck Surgery, Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200011, China
- Ear Institute, Shanghai Jiao Tong University School of Medicine, Shanghai 200125, China
| | - Jie Li
- Institute of Neuroscience, State Key Laboratory of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai 200031, China
| | - Chao Li
- Institute of Neuroscience, State Key Laboratory of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai 200031, China
| | - Guangqin Wang
- Institute of Neuroscience, State Key Laboratory of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai 200031, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Lei Song
- Department of Otolaryngology-Head and Neck Surgery, Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200011, China
- Ear Institute, Shanghai Jiao Tong University School of Medicine, Shanghai 200125, China
| | - Zhenghong Bi
- Institute of Neuroscience, State Key Laboratory of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai 200031, China
| | - Zhiyong Liu
- Institute of Neuroscience, State Key Laboratory of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai 200031, China
- University of Chinese Academy of Sciences, Beijing 100049, China
- Shanghai Center for Brain Science and Brain-Inspired Intelligence Technology, Shanghai 201210, China
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