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Skarmoutsos I, Mancera RL, Mossa S, Samios J. Local intermolecular structure, hydrogen bonding and related dynamics in the liquid cis/trans N-methylformamide mixture: A density functional theory based Born-Oppenheimer molecular dynamics study. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.120085] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Hydrogen bonding structure and dynamics of cis- and trans- conformers of N-methylformamide in water, DMSO and water-DMSO mixtures at varying compositions. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.119610] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Biswas S, Mallik BS. Probing the vibrational dynamics of amide bands of N-methylformamide, N, N-dimethylacetamide, and N-methylacetamide in water. COMPUT THEOR CHEM 2020. [DOI: 10.1016/j.comptc.2020.113001] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Biswas S, Mallik BS. Aqueous hydroxyl group as the vibrational probe to access the hydrophobicity of amide derivatives. J Mol Liq 2020. [DOI: 10.1016/j.molliq.2019.112395] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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Chand A, Chettiyankandy P, Chowdhuri S. Behaviour of cis- and trans-N-methylformamide in liquid mixture: Dynamical properties at varying pressure and temperature, and ion solvation scenario. J Mol Liq 2018. [DOI: 10.1016/j.molliq.2018.08.012] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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Fujii K, Yoshitake M, Watanabe H, Takamuku T, Umebayashi Y. Hydrogen bonding in protic and aprotic amide mixtures: Low-frequency Raman spectroscopy, small-angle neutron scattering, and molecular dynamics simulations. J Mol Liq 2017. [DOI: 10.1016/j.molliq.2017.05.017] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Elpidoforou N, Skarmoutsos I, Kainourgiakis E, Raptis V, Samios J. Local structure and translational dynamics of NMF (N-methylformamide)–DMF (N,N-dimethylformamide) mixtures, via molecular dynamics simulation. J Mol Liq 2017. [DOI: 10.1016/j.molliq.2016.09.039] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Wang Y, Guo M, Wei S, Yin S, Wang Y, Song Z, Hoffmann MR. Intermolecular hydrogen bonding of N-methylformamide in aqueous environment: A theoretical study. COMPUT THEOR CHEM 2014. [DOI: 10.1016/j.comptc.2014.09.006] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Dellis D, Skarmoutsos I, Samios J. Solvation Structure and Dynamics of cis- and trans-1,2 Dichloroethene Isomers in Supercritical Carbon Dioxide. A Molecular Dynamics Simulation Study. J Phys Chem B 2011; 115:12098-107. [DOI: 10.1021/jp204202p] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Dimitris Dellis
- University of Athens, Department of Chemistry, Laboratory of Physical Chemistry, Panepistimiopolis 157-71, Athens, Greece
| | - Ioannis Skarmoutsos
- Department of Chemistry, Imperial College London, London SW7 2AZ, United Kingdom
| | - Jannis Samios
- University of Athens, Department of Chemistry, Laboratory of Physical Chemistry, Panepistimiopolis 157-71, Athens, Greece
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Cordeiro JM, Soper AK. Investigation on the structure of liquid N-methylformamide–dimethylsulfoxide mixtures. Chem Phys 2011. [DOI: 10.1016/j.chemphys.2011.01.003] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Weiss AKH, Hofer TS, Randolf BR, Bhattacharjee A, Rode BM. Hydrogen bond formation of formamide and N-methylformamide in aqueous solution studied by quantum mechanical charge field-molecular dynamics (QMCF-MD). Phys Chem Chem Phys 2011; 13:12173-85. [DOI: 10.1039/c1cp20669a] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Kamieńska-Piotrowicz E, Dziewulska K, Stangret J. An Effective Method for Studying Intermolecular Interactions in Binary Liquids with Hydrogen Bonds; FTIR Spectra and Ab Initio Calculations in the N-Methylformamide−Methanol System. J Phys Chem B 2010; 114:5810-8. [DOI: 10.1021/jp911530d] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Ewa Kamieńska-Piotrowicz
- Department of Physical Chemistry, Chemical Faculty, Gdańsk University of Technology, Narutowicza 11/12, 80-233 Gdańsk, Poland
| | - Kamila Dziewulska
- Department of Physical Chemistry, Chemical Faculty, Gdańsk University of Technology, Narutowicza 11/12, 80-233 Gdańsk, Poland
| | - Janusz Stangret
- Department of Physical Chemistry, Chemical Faculty, Gdańsk University of Technology, Narutowicza 11/12, 80-233 Gdańsk, Poland
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Zoranić L, Mazighi R, Sokolić F, Perera A. Concentration fluctuations and microheterogeneity in aqueous amide mixtures. J Chem Phys 2009; 130:124315. [PMID: 19334838 DOI: 10.1063/1.3093071] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The relationship between concentration fluctuations and the microheterogeneous status of aqueous amide mixtures is addressed through the molecular dynamics study of three different amides, namely, formamide, N-methylformamide, and dimethylformamide. The computer simulations provide structural evidence that these mixtures exhibit considerable microheterogeneity, in apparent contrast to the experimentally obtained Kirkwood-Buff integrals which indicate that these mixtures should be near ideal. This contradiction is addressed by distinguishing microheterogeneity from concentration fluctuations. The former is the result of mixing H-bonding species under specific constraints due to various bonding possibilities between the molecules, while the second is related to the average relative distribution of the molecules. The relationship between these two different quantities is analyzed and illustrated in terms of the partial site-site structure factors. Small wave-number prepeaks relate to the microheterogeneity while zero wave-number value relates to the concentration fluctuations. A simple analytical statistical model for the microheterogeneity is formulated, which allows to discuss the small wave-number behavior of these structure factors in terms of the kinetics of the transient cluster formation, as observed in the computer simulations.
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Affiliation(s)
- Larisa Zoranić
- Laboratoire de Physique Théorique de la Matière Condensée (UMR CNRS 7600), Université Pierre et Marie Curie, 4 Place Jussieu, F75252 Paris Cedex 05, France
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Cordeiro JMM, Soper AK. Neutron Diffraction Study of Liquid N-Methylformamide Using EPSR Simulation. J Phys Chem B 2009; 113:6819-25. [DOI: 10.1021/jp902053y] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- João M. M. Cordeiro
- ISIS Facility, STFC Rutherford Appleton Laboratory, Harwell Science and Innovation Campus, Didcot, Oxon, OX11 0QX, United Kingdon
| | - Alan K. Soper
- ISIS Facility, STFC Rutherford Appleton Laboratory, Harwell Science and Innovation Campus, Didcot, Oxon, OX11 0QX, United Kingdon
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García Martínez A, Teso Vilar E, García Fraile A, Martínez-Ruiz P. Density functional theory study of self-association of N-methylformamide and its effect on intramolecular and intermolecular geometrical parameters and thecis/transpopulation. J Chem Phys 2006; 124:234305. [PMID: 16821916 DOI: 10.1063/1.2204910] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The single-point total energy (E) of several acyclic and cyclic oligomers of N-methylformamide (NMF) was computed by the first time without any geometrical restriction, using the B3LYP6-31G* method of the density functional theory in order to determine the effect of self-association on intramolecular geometrical parameters of cis- and trans-NMF, the intermolecular distances of the hydrogen-bonding chains formed by NMF as well as intermolecular association energies including counterpoise corrections. It is concluded that liquid NMF exists mainly as polymers formed by self-association of trans-NMF units, whereas the cis-NMF isomer occurs as isolated units inserted along the chains. These computational results are in accordance with the experimentally determined predominance (ca. 90%) of trans-NMF population by means of (1)H- NMR and other spectroscopic techniques, but in severe contradiction with a recent interpretation of x-ray diffraction data on liquid NMF, postulating a cyclic trimer of cis-NMF (c-C(3)) as the predominating species. The counterpoise-corrected values of the association energy, DeltaE(CP), calculated for cyclic oligomers, increase with the polymerization degree (n) revealing a high grade of cooperative effect for amidic hydrogen-bonded chains. Noteworthy, the difference between the DeltaE(CP) values of the cyclic cis- and trans-homooligomers of NMF is positive for n=2 and 3 but negative for n > or =4.
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Affiliation(s)
- A García Martínez
- Departamento de Química Orgánica, Facultad de Ciencias Químicas, Universidad Complutense de Madrid, Avenida Complutense s/n, E-28040 Madrid, Spain.
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Shin S, Kurawaki A, Hamada Y, Shinya K, Ohno K, Tohara A, Sato M. Conformational behavior of N-methylformamide in the gas, matrix, and solution states as revealed by IR and NMR spectroscopic measurements and by theoretical calculations. J Mol Struct 2006. [DOI: 10.1016/j.molstruc.2006.01.005] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Fujii K, Kumai T, Takamuku T, Umebayashi Y, Ishiguro SI. Liquid Structure and Preferential Solvation of Metal Ions in Solvent Mixtures of N,N-Dimethylformamide and N-Methylformamide. J Phys Chem A 2006; 110:1798-804. [PMID: 16451010 DOI: 10.1021/jp054972a] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Raman spectra of aprotic N,N-dimethylformamide (DMF) and protic N-methylformamide (NMF) mixtures containing manganese(II), nickel(II), and zinc(II) perchlorate were obtained, and the individual solvation numbers around the metal ions were determined over the whole range of solvent compositions. Variation profiles of the individual solvation numbers with solvent composition showed no significant difference among the metal systems examined. In all of these metal systems, no preferential solvation occurs in mixtures with DMF mole fraction of x(DMF) < 0.5, whereas DMF preferentially solvates the metal ions at x(DMF) > 0.5. The liquid structure of the mixtures was also studied by means of small-angle neutron scattering (SANS) and low-frequency Raman spectroscopy. SANS experiments demonstrate that DMF molecules do not appreciably self-aggregate in the mixtures over the whole range of solvent composition. Low-frequency Raman spectroscopy suggests that DMF molecules are extensively hydrogen-bonded with NMF in NMF-rich mixtures, whereas NMF molecules extensively self-aggregate in DMF-rich mixtures, although the liquid structure in neat NMF is partly ruptured. The bulk solvent structure in the mixtures thus varies with solvent composition, which plays a decisive role in developing the varying profiles of the individual solvation numbers of metal ions in the solvent mixtures.
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Affiliation(s)
- Kenta Fujii
- Department of Chemistry, Faculty of Science, Kyushu University, Hakozaki, Fukuoka 812-8581, Japan
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