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Yurenko YP, Novotný J, Mitoraj MP, Sklenář V, Michalak A, Marek R. Nucleic Acid Quadruplexes Based on 8-Halo-9-deazaxanthines: Energetics and Noncovalent Interactions in Quadruplex Stems. J Chem Theory Comput 2014; 10:5353-65. [DOI: 10.1021/ct5007554] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Yevgen P. Yurenko
- CEITEC
− Central European Institute of Technology, Masaryk University, Kamenice 5/A4, CZ − 62500 Brno, Czech Republic
| | - Jan Novotný
- CEITEC
− Central European Institute of Technology, Masaryk University, Kamenice 5/A4, CZ − 62500 Brno, Czech Republic
- National
Center for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic
| | - Mariusz P. Mitoraj
- Department
of Theoretical Chemistry, Faculty of Chemistry, Jagiellonian University, R. Ingardena 3, Krakow PL-30060, Poland
| | - Vladimir Sklenář
- CEITEC
− Central European Institute of Technology, Masaryk University, Kamenice 5/A4, CZ − 62500 Brno, Czech Republic
- National
Center for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic
- Department
of Chemistry, Faculty of Science, Masaryk University, Kamenice
5, 625 00 Brno, Czech Republic
| | - Artur Michalak
- Department
of Theoretical Chemistry, Faculty of Chemistry, Jagiellonian University, R. Ingardena 3, Krakow PL-30060, Poland
| | - Radek Marek
- CEITEC
− Central European Institute of Technology, Masaryk University, Kamenice 5/A4, CZ − 62500 Brno, Czech Republic
- National
Center for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic
- Department
of Chemistry, Faculty of Science, Masaryk University, Kamenice
5, 625 00 Brno, Czech Republic
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Deepa P, Kolandaivel P, Senthilkumar K. Structural properties and the effect of interaction of alkali (Li+, Na+, K+) and alkaline earth (Be2+, Mg2+, Ca2+) metal cations with G and SG-tetrads. COMPUT THEOR CHEM 2011. [DOI: 10.1016/j.comptc.2011.07.012] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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Meng F, Zhao X. Theoretical study of inosine tetrad and octamer interacting with alkali metal ions. ACTA ACUST UNITED AC 2008. [DOI: 10.1016/j.theochem.2008.08.028] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Wang H, Meng F, Xu W, Liu C. The effects of incorporating 2,4-dithiouracil into uracil tetrad: a theoretical study. ACTA ACUST UNITED AC 2005. [DOI: 10.1016/j.theochem.2004.12.008] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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