Kinetics of salt-induced J-aggregation of an anionic thiacarbocyanine dye in aqueous solution

Spectral-fluorescent study of substituted trimethine cyanine dyes in solutions and in complexes with DNA. Effects of aggregation, moderate heating, and decreasing pH

Trimethine cyanine dyes are widely used as probes for the detection, study and quantification of biomolecules. In particular, cationic trimethine cyanines noncovalently interact with DNA with growing fluorescence. However, their use is often limited by the tendency to self-association - to the formation of aggregates. Disubstituted trimethine cyanines with hydrophobic substituents are especially prone to aggregation. In this work, we studied the interaction of a number of substituted trimethine cyanines with DNA (in aqueous buffer solutions) and showed that their aggregation strongly interfered with their use as fluorescent probes for DNA. To eliminate this drawback, preliminary heating of dye solutions with DNA to 60-70 °C was used, followed by cooling to room temperature. Compared to the experiments without heating, an increase in the dye fluorescence intensity was observed due to the partial thermal decomposition of the aggregates and the interaction of the resulting monomers with DNA. To decompose aggregates, another method was also used - protonation of the dyes with amino substituents in buffer solutions with pH 5.0, which also led to growing the dye fluorescence intensity in the presence of DNA. Complexes of the dyes with DNA were modeled using molecular docking. Effective binding constants of the dyes to DNA and detection limits when using the dyes as probes for DNA (LOD and LOQ) were determined. It is shown that dye 3 with heating in neutral buffer and dye 1 in acidic buffer may be recommended as sensitive probes for DNA. It is concluded that the method of preliminary heating may be applied to dyes prone to aggregation, for improving their properties as biomolecular probes. Another possible means to reduce the interfering effects of dye aggregates is to use easily protonated dyes (with amino substituents) in slightly acidic media.

Shielding Effects Provide a Dominant Mechanism in J-Aggregation-Induced Photoluminescence Enhancement of Carbon Nanotubes

The unique photophysical properties of single-walled carbon nanotubes (SWCNTs) exhibit great potential for bioimaging applications. This led to extensive exploration of photosensitization methods to improve their faint shortwave infrared (SWIR) photoluminescence. Here, we report the mechanisms of SWCNT-assisted J-aggregation of cyanine dyes and the associated photoluminescence enhancement of SWCNTs in the SWIR spectral region. Surprisingly, we found that excitation energy transfer between the cyanine dyes and SWCNTs makes a negligible contribution to the overall photoluminescence enhancement. Instead, the shielding of SWCNTs from the surrounding water molecules through hydrogen bond-assisted macromolecular reorganization of ionic surfactants triggered by counterions and the physisorption of the dye molecules on the side walls of SWCNTs play a primary role in the photoluminescence enhancement of SWCNTs. We observed 2 orders of magnitude photoluminescence enhancement of SWCNTs by optimizing these factors. Our findings suggest that the proper shielding of SWCNTs is the critical factor for their photoluminescence enhancement, which has important implications for their application as imaging agents in biological settings.

A combined experimental and DFT study of metal core/indocyanine green shell hybrid nanoparticles

Indocyanine green (ICG) is the FDA-approved fluorescent dye used for in vivo medical imaging, diagnostics, and photothermal therapy. However, this dye is easily degradable in the human vascular system, and therefore its stabilization is preferable. In this work, ICG molecules were stabilized by their adsorption on the surface of the L-methionine-capped Ag and Au nanoparticles (Ag and Au @LM NPs) in aqueous colloidal dispersions. The result is the formation of hybrid metal core/ICG shell NPs in colloidal dispersions. Additionally, colloidal dispersions were stabilized, indicating a double effect of ICG adsorption. The obtained hybrid NPs were studied experimentally (UV-Vis spectrophotometry, HRTEM, DLS, FTIR) and theoretically (DFT calculations). HRTEM revealed that the interplanar spacing between adjacent planes of NPs decreases after the dye adsorption. The results obtained from the DFT study confirmed the formation of a covalent bond between the oxygen from ICG dye SO3- group and metal NPs. Considering the characteristics of both components of the NPs/ICG hybrid system, the authors assume that this hybrid system can exhibit the synergistic effect that could lead to more successful theranostic treatment of cancer in nanomedicine.

Synthesis and Study on Aggregation Behaviors in Liquid Phase of Three Prepared Cyanine Dyes

Here we investigate the aggregation behaviors of three prepared dyes in the liquid phase to pick out one possessing J-aggregation characteristic which is of significant interest for organic materials used in multiple bio-applications. The self-assembly of dyes usually leads to various forms of aggregates, for example, H-aggregates or J-aggregates and it is easy to distinguish bathochromic J-aggregation from hypsochromic H-aggregation by UV/Vis spectroscopy. Enlightened by the cyanine dyes which have shown a great tendency to self-associate, we designed and synthesized three cyanine dyes: Cy7-Ph, DCy7-Ph, SN-Cy7-Ph, followed by the study of the influence of multiple factors to their aggregation behaviors, including solvent polarity, ionic strength and temperature. Finally, we found that only SN-Cy7-Ph of the three molecules can self-assemble into J-aggregates conveniently and stably in the aqueous phase under normal conditions.

Non-Arrhenius kinetics and slowed-diffusion mechanism of molecular aggregation of a rhodamine dye on colloidal particles

The non-covalent association is important for many fields of science, including processes in living systems. This work elucidates the mechanism of rhodamine 123 molecular aggregation in dispersions of a layered silicate and explains the mystery of the slow kinetics of this process. Chemometric analysis of thousands of spectra recorded by stopped-flow visible spectroscopy identified two parallel diffusion processes described by a two-phase exponential function. The slow and fast processes followed the super-Arrhenius kinetics and were assigned to lateral (surface) diffusion and inter-particle diffusion of dye cations, respectively. This work, supported by a large amount of data and their in-depth analysis, provides the first evidence of how these processes coexist together and provides quantitative analysis of their dependence on the reaction conditions. The implications of this work can be crucial for understanding the mechanism of the non-covalent association of adsorbed molecules in nature.

What is Best Strategy for Water Soluble Fluorescence Dyes?-A Case Study Using Long Fluorescence Lifetime DAOTA Dyes*

The lipophilic nature of organic dyes complicates their effectiveness in aqueous solutions. In this work we investigate three different strategies for achieving water-solubility of the diazaoxatriangulenium (DAOTA⁺ ) chromophore: hydrophilic counter ions, aromatic sulfonation of the chromophore, and attachment of charged side chains. The long fluorescence lifetime (FLT, τ_f =20 ns) of DAOTA⁺ makes it a sensitive probe to analyze solvation and aggregation effects. Direct sulfonation of the chromophore was found to increase solubility drastically, but at the cost of greatly reduced quantum yields (QYs) due to enhanced non-radiative deactivation processes. The introduction of either cationic (4) or zwitterionic side chains (5), however, brings the FLT (τ_f =18 ns) and QY (ϕ_f =0.56) of the dye to the same level as the parent chromophore in acetonitrile. Time-resolved fluorescence spectroscopy also reveals a high resistance to aggregation and non-specific binding in a high loading of bovine serum albumin (BSA). The results clearly show that addition of charged flexible side chains is preferable to direct sulfonation of the chromophore core.

Mechanism of rhodamine 6G molecular aggregation in montmorillonite colloid

Stopped-flow mixing device and visible absorption spectroscopy were used for the analysis of dye rhodamine 6G (R6G) molecular aggregation in the colloids based on Na-saturated montmorillonite. Two stages of the reaction were identified: The first stage was very short and taking only several seconds, involving the adsorption of R6G cations and their initial aggregation on the surface of colloid particles. The initially formed J-aggregates exhibited similar spectral properties as monomeric form of R6G. In the second stage, initially formed aggregates converted to sandwich-type H-aggregates absorbing light at significantly lower wavelengths and adsorbed monomers. The aggregate rearrangement took several hours. Monomers, with the spectral properties identical to R6G solution, were also identified as a component in complex spectra using principal component analysis (PCA) and multivariate curve resolution (MCR). Partial bleaching of the dye was also proven. Reaction kinetics of the rearrangement of the aggregates followed the model considering a complex mechanism of the molecular aggregation. Data fits using stretched-exponential function led to the determination of rate constants, which had been in the range 10−3−4×10−3s−1.

Contrasting behavior of classical salts versus ionic liquids toward aqueous phase J-aggregate dissociation of a cyanine dye

The effect of addition of ionic liquids (ILs) on the aggregation behavior of a cyanine dye, 5,5',6,6'-tetrachloro-1,1'-diethyl-3,3'-di(4-sulfobutyl)-benzimidazolocarbocyanine (TDBC), was investigated. In basic aqueous buffer solutions (pH ≥ 10), TDBC preferably exists in its J-aggregated form. Addition of hydrophilic ILs > 5 wt % is observed to disrupt the TDBC J-aggregates, converting them to monomer form most likely because of the interaction between bulky IL cation and the J-aggregates in a time-dependent fashion. This is evidenced by the observed increase in monomer band absorbance at the expense of the absorbance band due to J-aggregates over time. Inorganic salts at similar molar concentrations do not cause this phenomenon but instead induce TDBC precipitation. At low concentrations (<5 wt %), the added IL acts similarly to the inorganic salts, reducing the overall absorbance of TDBC in the solution most likely due to cation exchange causing TDBC precipitation. Addition of a molecular solvent, ethanol, at 15 wt % results in an initial increase in monomer absorbance, albeit to a much lesser extent than for the corresponding molar fraction of IL, which then decreases over time with recovery of J-aggregate absorbance--quite opposite the time-dependent behavior seen for TDBC in PB at pH 12.0 with >5 wt % IL. The unique and dual behavior of ILs as an additive toward affecting cyanine dye aggregation is demonstrated.

Specific Cu(2+)-induced J-aggregation and Hg(2+)-induced fluorescence enhancement based on BODIPY

A BODIPY derivative with an -NH(2) and -OH substituted meso-phenyl group is reported, which, under biological conditions, exhibits metal-induced J-aggregation in the presence of Cu(2+) and a specific fluorescence enhancement for Hg(2+).

J-Aggregation of Anionic Ethyl meso-Thiacarbocyanine Dyes Induced by Binding to Proteins

The effects of ribonuclease A (RNase), lysozyme, trypsin, and bovine serum albumin (BSA) on the J-aggregation behavior of 3,3'-bis[sulfopropyl]-5-methoxy-4',5'-benzo-9-ethylthiacarbocyanine (1), 3,3'-bis[sulfopropyl]-4,5,4',5'-dibenzo-9-ethylthiacarbocyanine (2), and 3,3'-bis[sulfopropyl]-5,5'-dimethoxy-9-ethylthiacarbocyanine (3) were studied in aqueous solution. The formation of J-aggregates at pH 6 is induced by RNase for 1-3, by lysozyme for 1 and 2, and by trypsin for 2. The formation of J-aggregates correlates with decay of the dimers and is supported by induced circular dichroism spectra. The concentration of J-aggregates for lysozyme/1 increases with an increase in the protein/dye concentration ratio, reaches a plateau, and then gradually decreases. J-aggregates are characterized by relatively weak fluorescence; e.g., Phi(f) = 0.01 for lysozyme/1, and by a small Stokes shift of 6-8 nm, indicating almost resonance fluorescence. J-aggregation proceeds in the range of seconds to minutes with sigmoidal type kinetic curves for trypsin/2 and nonsigmoidal kinetics in the other cases. The presence of BSA, in contrast to RNase, lysozyme, and trypsin, results in deaggregation of dimers of 1-3 and formation of bound monomers and exhibits intense fluorescence from the trans-monomer; e.g., Phi(f) = 0.22 for BSA/1. Generally, the binding of 1-3 to the proteins is a cooperative process, where the number of binding sites changes from n = 15 for lysozyme/1 to n = 6 for trypsin/2 and n = 0.3 and 1 for BSA/3.

Kinetics of salt-induced J-aggregation of cyanine dyes

The addition of monovalent, divalent, and trivalent metal ions to three anionic ethyl meso-thiacarbocyanine dyes, an ethyl meso-oxacarbocyanine, and an imidacarbocyanine in aqueous solution at room temperature results in the production of J-aggregates within the range of tens to hundreds of seconds. The rate of formation of J-aggregates correlates with the rate of decay of dimers or monomers and is dependent on the type of metal ion, dye structure, and temperature. The rate of formation of J-aggregates increases as the temperature decreases and the dye and salt concentrations increase, and the rate is highest for trivalent ions and smallest for monovalent ions, independent of the type of anion. The time course of formation of J-aggregates is described in most cases by a sigmoidal curve, and the kinetics and mechanism are discussed within the framework of autocatalysis. Computer simulations reveal that the sigmoidal time dependence is transferred to an exponential-like curve by substantially increasing the rate constant for the noncatalytic step. The reaction pathway into J-aggregates can be switched from dimeric ion pairs as the reactant to monomeric ion pairs, when the rate constant for the catalytic step via the monomer becomes larger with respect to that via the dimer.

Kinetics of J-Aggregation of Cyanine Dyes in the Presence of Gelatin

The kinetics of formation of J-aggregates for 3,3'-bis[sulfopropyl]-R-4',5'-dibenzo-9-ethylthiacarbocyanines (R=5-methoxy; R=4,5-dibenzo) and 3,3'-bis[sulfopropyl]-5,5'-diphenyl-9-ethyloxacarbocyanine were studied in aqueous solution in the presence of gelatin at different pH values and at room and elevated temperatures. Addition of gelatin at concentrations of 0.0005-0.05 wt % to solutions of dyes results in the production of J-aggregates in the tens of seconds to tens of minutes range. The rate of J-aggregate formation increases with increasing concentrations of dye and gelatin, correlates with the rate of decay of dimers, and is also dependent on the dye structure, temperature, and pH. The rate of J-aggregation is increased for and decreased for with an increase in temperature. For and, the rate increases with increasing [H+] and reaches the maximum value at pH 3.3-4.3 for 3. The interaction of with gelatin is considered to be a cooperative binding process, and J-aggregation is characterized by the time-dependent rate constant. Sigmoidal- and nonsigmoidal-type kinetic curves of both formation of J-aggregates and decay of the dimers are best fitted with a stretched exponential function.

Solvent-Induced Organization of Squaraine Dyes in Solution Capillary Layers and Adsorbed Films

Unusual behavior of indolenine and hydroxyphenyl squaraines has been observed in solution capillary layers and adsorbed films. The confined solutions showed anomalous aggregation of squaraine molecules in contrast to their monomer behavior in the bulk solutions of the same concentration, along with formation of a macroscopic cell-like structure in the confined solution layer, with the diameter of cells being 3-5 microm. The aggregate structure, as observed through electronic absorption spectra, was strongly dependent on the chemical structure of squaraine used and solvent used, and it also was different from squaraine aggregates observed in aqueous solutions and films prepared by vacuum evaporation. It has been found that indolenine squaraine is capable of forming H-aggregates in confined dimethylformamide solutions and hydroxyphenyl squaraine is capable of forming J-aggregates in confined dimethylformamide solutions and adsorbed films. The results were compared with pseudoisocyanine, which forms J-aggregates in aqueous bulk solutions readily; however, no J-aggregates have been found in their capillary layers. The interplay of dye-dye, dye-surface, and dye-solvent interactions resulting in the above effects is discussed.