1
|
Wang J, Ochiai Y, Wu N, Adachi K, Inoue D, Hashizume D, Kong D, Matsuhisa N, Yokota T, Wu Q, Ma W, Sun L, Xiong S, Du B, Wang W, Shih CJ, Tajima K, Aida T, Fukuda K, Someya T. Intrinsically stretchable organic photovoltaics by redistributing strain to PEDOT:PSS with enhanced stretchability and interfacial adhesion. Nat Commun 2024; 15:4902. [PMID: 38851770 PMCID: PMC11162488 DOI: 10.1038/s41467-024-49352-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Accepted: 06/02/2024] [Indexed: 06/10/2024] Open
Abstract
Intrinsically stretchable organic photovoltaics have emerged as a prominent candidate for the next-generation wearable power generators regarding their structural design flexibility, omnidirectional stretchability, and in-plane deformability. However, formulating strategies to fabricate intrinsically stretchable organic photovoltaics that exhibit mechanical robustness under both repetitive strain cycles and high tensile strains remains challenging. Herein, we demonstrate high-performance intrinsically stretchable organic photovoltaics with an initial power conversion efficiency of 14.2%, exceptional stretchability (80% of the initial power conversion efficiency maintained at 52% tensile strain), and cyclic mechanical durability (95% of the initial power conversion efficiency retained after 100 strain cycles at 10%). The stretchability is primarily realised by delocalising and redistributing the strain in the active layer to a highly stretchable PEDOT:PSS electrode developed with a straightforward incorporation of ION E, which simultaneously enhances the stretchability of PEDOT:PSS itself and meanwhile reinforces the interfacial adhesion with the polyurethane substrate. Both enhancements are pivotal factors ensuring the excellent mechanical durability of the PEDOT:PSS electrode, which further effectively delays the crack initiation and propagation in the top active layer, and enables the limited performance degradation under high tensile strains and repetitive strain cycles.
Collapse
Affiliation(s)
- Jiachen Wang
- Department of Electrical Engineering and Information Systems, The University of Tokyo, Tokyo, 113-8656, Japan
- RIKEN Center for Emergent Matter Science (CEMS), Saitama, 351-0198, Japan
- Institute for Chemical and Bioengineering, ETH Zurich, Zurich, 8093, Switzerland
| | - Yuto Ochiai
- RIKEN Center for Emergent Matter Science (CEMS), Saitama, 351-0198, Japan
| | - Niannian Wu
- RIKEN Center for Emergent Matter Science (CEMS), Saitama, 351-0198, Japan
- Department of Chemistry and Biotechnology, The University of Tokyo, Tokyo, 113-8656, Japan
| | - Kiyohiro Adachi
- RIKEN Center for Emergent Matter Science (CEMS), Saitama, 351-0198, Japan
| | - Daishi Inoue
- RIKEN Center for Emergent Matter Science (CEMS), Saitama, 351-0198, Japan
| | - Daisuke Hashizume
- RIKEN Center for Emergent Matter Science (CEMS), Saitama, 351-0198, Japan
| | - Desheng Kong
- College of Engineering and Applied Sciences, State Key Laboratory of Analytical Chemistry for Life Science, Nanjing University, Nanjing, 210046, China
| | - Naoji Matsuhisa
- Research Center for Advanced Science and Technology, The University of Tokyo, Tokyo, 153-8505, Japan
- Institute of Industrial Science, The University of Tokyo, Tokyo, 153-8505, Japan
| | - Tomoyuki Yokota
- Department of Electrical Engineering and Information Systems, The University of Tokyo, Tokyo, 113-8656, Japan
- Institute of Engineering Innovation, The University of Tokyo, Tokyo, 113-8656, Japan
| | - Qiang Wu
- State Key Laboratory for Mechanical Behaviour of Materials, Xi'an Jiaotong University, Xi'an, 710049, China
| | - Wei Ma
- State Key Laboratory for Mechanical Behaviour of Materials, Xi'an Jiaotong University, Xi'an, 710049, China
| | - Lulu Sun
- Thin-Film Device Laboratory, RIKEN, Saitama, 351-0198, Japan
| | - Sixing Xiong
- RIKEN Center for Emergent Matter Science (CEMS), Saitama, 351-0198, Japan
| | - Baocai Du
- Department of Electrical Engineering and Information Systems, The University of Tokyo, Tokyo, 113-8656, Japan
- RIKEN Center for Emergent Matter Science (CEMS), Saitama, 351-0198, Japan
| | - Wenqing Wang
- Department of Electrical Engineering and Information Systems, The University of Tokyo, Tokyo, 113-8656, Japan
- RIKEN Center for Emergent Matter Science (CEMS), Saitama, 351-0198, Japan
| | - Chih-Jen Shih
- Institute for Chemical and Bioengineering, ETH Zurich, Zurich, 8093, Switzerland
| | - Keisuke Tajima
- RIKEN Center for Emergent Matter Science (CEMS), Saitama, 351-0198, Japan
| | - Takuzo Aida
- RIKEN Center for Emergent Matter Science (CEMS), Saitama, 351-0198, Japan
- Department of Chemistry and Biotechnology, The University of Tokyo, Tokyo, 113-8656, Japan
| | - Kenjiro Fukuda
- RIKEN Center for Emergent Matter Science (CEMS), Saitama, 351-0198, Japan.
- Thin-Film Device Laboratory, RIKEN, Saitama, 351-0198, Japan.
| | - Takao Someya
- Department of Electrical Engineering and Information Systems, The University of Tokyo, Tokyo, 113-8656, Japan.
- RIKEN Center for Emergent Matter Science (CEMS), Saitama, 351-0198, Japan.
- Thin-Film Device Laboratory, RIKEN, Saitama, 351-0198, Japan.
| |
Collapse
|
2
|
Suk Kim J, ud Din F, Jin Choi Y, Ran Woo M, Cheon S, Hun Ji S, Park S, Oh Kim J, Seok Youn Y, Lim SJ, Giu Jin S, Choi HG. Hydroxypropyl-β-cyclodextrin-based solid dispersed granules: A prospective alternative to conventional solid dispersion. Int J Pharm 2022; 628:122286. [DOI: 10.1016/j.ijpharm.2022.122286] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2022] [Revised: 09/20/2022] [Accepted: 10/07/2022] [Indexed: 10/31/2022]
|
3
|
Trinh CK, Choi JW, Tran TK, Ahmad Z, Lee JS. Intermolecular interactions of an isoindigo-based organic semiconductor with various crosslinkers through hydrogen bonding. RSC Adv 2022; 12:26400-26405. [PMID: 36275086 PMCID: PMC9479677 DOI: 10.1039/d2ra05190g] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2022] [Accepted: 09/05/2022] [Indexed: 11/21/2022] Open
Abstract
The effects of crosslinkers, functioning via hydrogen bonding, on controlling the arrangement of molecules were investigated. The hole mobility of hydrogen-bonded organic materials displaying long-range order was significantly enhanced.
Collapse
Affiliation(s)
- Cuc Kim Trinh
- Chemical Engineering in Advanced Materials and Renewable Energy Research Group, School of Engineering and Technology, Van Lang University, Ho Chi Minh City, Vietnam
| | - Jin Woo Choi
- Department of Data Information and Physics, Kongju National University, 56 Gongjudaehak-ro, Gongju, Chungcheongnam-do 32588, Republic of Korea
| | - Thien Khanh Tran
- Chemical Engineering in Advanced Materials and Renewable Energy Research Group, School of Engineering and Technology, Van Lang University, Ho Chi Minh City, Vietnam
| | - Zubair Ahmad
- School of Chemical Engineering, Yeungnam University, 280 Daehak-ro, Gyeongsan, Gyeongbuk 38541, Republic of Korea
| | - Jae-Suk Lee
- School of Materials Science & Engineering, Gwangju Institute of Science and Technology (GIST), Gwangju 61005, Republic of Korea
| |
Collapse
|
4
|
Carpenter WB, Yu Q, Hack JH, Dereka B, Bowman JM, Tokmakoff A. Decoding the 2D IR spectrum of the aqueous proton with high-level VSCF/VCI calculations. J Chem Phys 2020; 153:124506. [PMID: 33003749 DOI: 10.1063/5.0020279] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023] Open
Abstract
The aqueous proton is a common and long-studied species in chemistry, yet there is currently intense interest devoted to understanding its hydration structure and transport dynamics. Typically described in terms of two limiting structures observed in gas-phase clusters, the Zundel H5O2 + and Eigen H9O4 + ions, the aqueous structure is less clear due to the heterogeneity of hydrogen bonding environments and room-temperature structural fluctuations in water. The linear infrared (IR) spectrum, which reports on structural configurations, is challenging to interpret because it appears as a continuum of absorption, and the underlying vibrational modes are strongly anharmonically coupled to each other. Recent two-dimensional IR (2D IR) experiments presented strong evidence for asymmetric Zundel-like motifs in solution, but true structure-spectrum correlations are missing and complicated by the anharmonicity of the system. In this study, we employ high-level vibrational self-consistent field/virtual state configuration interaction calculations to demonstrate that the 2D IR spectrum reports on a broad distribution of geometric configurations of the aqueous proton. We find that the diagonal 2D IR spectrum around 1200 cm-1 is dominated by the proton stretch vibrations of Zundel-like and intermediate geometries, broadened by the heterogeneity of aqueous configurations. There is a wide distribution of multidimensional potential shapes for the proton stretching vibration with varying degrees of potential asymmetry and confinement. Finally, we find specific cross peak patterns due to aqueous Zundel-like species. These studies provide clarity on highly debated spectral assignments and stringent spectroscopic benchmarks for future simulations.
Collapse
Affiliation(s)
- William B Carpenter
- Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, USA
| | - Qi Yu
- Department of Chemistry and Cherry L. Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, USA
| | - John H Hack
- Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, USA
| | - Bogdan Dereka
- Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, USA
| | - Joel M Bowman
- Department of Chemistry and Cherry L. Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, USA
| | - Andrei Tokmakoff
- Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, USA
| |
Collapse
|
5
|
Scarpelli F, Crispini A, Giorno E, Marchetti F, Pettinari R, Di Nicola C, De Santo MP, Fuoco E, Berardi R, Alfano P, Caputo P, Policastro D, Oliviero Rossi C, Aiello I. Preparation and Characterization of Silver(I) Ethylcellulose Thin Films as Potential Food Packaging Materials. Chempluschem 2020; 85:426-440. [PMID: 32154993 DOI: 10.1002/cplu.201900681] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2019] [Revised: 02/19/2020] [Indexed: 12/24/2022]
Abstract
Ag(I)-containing ethylcellulose (EC) films suitable as antbacterial packaging materials have been prepared and fully characterized. Different preparation methods, including the use of green casting solvents, are proposed. The Ag(I) acylpyrazolonato complexes, [Ag(Qpy,CF3 )(L)], L=benzylimidazole (Bzim) and L=ethylimidazole (EtimH), used as active additives, display different modes of interactions with EC, depending on their structural features. A thorough investigation of the EC liquid-crystalline lyotropic phase and its changes with the introduction of silver additives, has been conducted, revealing either the inclusion of complex molecules into the inner structure of the EC matrix or their dispersion on its surface. Moreover, the bactericidal activity of the prepared Ag(I) films seems to be related to the interaction between silver additives and the polymeric EC matrix. Indeed, the EC-2b films show a particularly good performance even with a low silver content, with a relative bacterial killing of about 100 %. Tests for Ag(I) migration have been performed by using three food stimulants under two assay conditions. Low values of silver release are recorded, particularly at low concentration of silver content, in the case of all new prepared Ag(I) films.
Collapse
Affiliation(s)
- Francesca Scarpelli
- MAT-InLAB, Dipartimento di Chimica e Tecnologie Chimiche, Università della Calabria, 87036, Arcavacata di Rende (CS, Italy
| | - Alessandra Crispini
- MAT-InLAB, Dipartimento di Chimica e Tecnologie Chimiche, Università della Calabria, 87036, Arcavacata di Rende (CS, Italy
| | - Eugenia Giorno
- MAT-InLAB, Dipartimento di Chimica e Tecnologie Chimiche, Università della Calabria, 87036, Arcavacata di Rende (CS, Italy
| | - Fabio Marchetti
- School of Science and Technology Chemistry Section, University of Camerino, Via S. Agostino 1, 62032, Camerino (MC, Italy
| | - Riccardo Pettinari
- School of Pharmacy Chemistry Section, University of Camerino, Via S. Agostino 1, 62032, Camerino (MC, Italy
| | - Corrado Di Nicola
- School of Science and Technology Chemistry Section, University of Camerino, Via S. Agostino 1, 62032, Camerino (MC, Italy
| | - Maria Penelope De Santo
- Dipartimento di Fisica, Università della Calabria, 87036, Arcavacata di Rende (CS, Italy.,CNR NANOTEC-Istituto di Nanotecnologia U.O.S. Cosenza, 87036, Arcavacata di Rende (CS), Italy
| | - Erica Fuoco
- Dipartimento di Fisica, Università della Calabria, 87036, Arcavacata di Rende (CS, Italy.,CNR NANOTEC-Istituto di Nanotecnologia U.O.S. Cosenza, 87036, Arcavacata di Rende (CS), Italy
| | - Riccardo Berardi
- TiFQLab - Centro di sperimentazione ricerca e analisi applicate alle tecnologie alimentari e dell'acqua potabile - Department DIMES, Università della Calabria, 87036, Arcavacata di Rende (CS, Italy
| | - Pasquale Alfano
- TiFQLab - Centro di sperimentazione ricerca e analisi applicate alle tecnologie alimentari e dell'acqua potabile - Department DIMES, Università della Calabria, 87036, Arcavacata di Rende (CS, Italy
| | - Paolino Caputo
- Dipartimento di Chimica e Tecnologie Chimiche, Università della Calabria, 87036, Arcavacata di Rende (CS, Italy
| | - Debora Policastro
- MAT-InLAB, Dipartimento di Chimica e Tecnologie Chimiche, Università della Calabria, 87036, Arcavacata di Rende (CS, Italy
| | - Cesare Oliviero Rossi
- Dipartimento di Chimica e Tecnologie Chimiche, Università della Calabria, 87036, Arcavacata di Rende (CS, Italy
| | - Iolinda Aiello
- MAT-InLAB, Dipartimento di Chimica e Tecnologie Chimiche, Università della Calabria, 87036, Arcavacata di Rende (CS, Italy.,CNR NANOTEC-Istituto di Nanotecnologia U.O.S. Cosenza, 87036, Arcavacata di Rende (CS), Italy.,LASCAMM CR-INSTM Unità INSTM della Calabria, Università della Calabria, 87036, Arcavacata di Rende (CS, Italy
| |
Collapse
|
6
|
Guan Z, Shen D, Li M, Ma C, Chen WC, Cui X, Liu B, Lo MF, Tsang SW, Lee CS, Zhang W. Effects of Hydrogen Bonds between Polymeric Hole-Transporting Material and Organic Cation Spacer on Morphology of Quasi-Two-Dimensional Perovskite Grains and Their Performance in Light-Emitting Diodes. ACS APPLIED MATERIALS & INTERFACES 2020; 12:9440-9447. [PMID: 31990178 DOI: 10.1021/acsami.9b20750] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Perovskite is emerging as a novel emitter in solution-processed light-emitting diodes (LEDs). In these LEDs, morphology, especially the grain size of perovskite, plays a key role in determining electroluminescence performance. Several studies have shown that sizes of the perovskite grains can be controlled by the contact angle between the perovskite solution and the substrate. In this work, we found that in the quasi-two-dimensional (2D) system, the perovskite grain size can be substantially refined when there are hydrogen bonding between the perovskite's organic spacer and the substrates. In fact, for quasi-2D perovskite, with the presence of such hydrogen bond, its effects on the perovskite grain size overshadow the contact angle's effect. We demonstrated that perovskite with refined grains can form amine- or carbazole-based polymers which can form N···H hydrogen bonding with the perovskite's organic spacer. Using these polymers as hole-transporting layers on poly(3,4-ethylenedioxythiophene):polystyrene sulfonate, external quantum efficiency of CsPbBr3-based LEDs can be enhanced from 1.5 to 10.0% without passivation treatment. This work suggests that bonding between perovskite precursors and the substrate can have significant influence on the morphology of the final perovskite grains and their optoelectronic performance.
Collapse
Affiliation(s)
- Zhiqiang Guan
- Center of Super-Diamond and Advanced Films (COSDAF) , City University of Hong Kong , Kowloon , Hong Kong SAR 999077 , P. R. China
- Department of Chemistry , City University of Hong Kong , Kowloon 999077 , Hong Kong SAR , P. R. China
- Department of Material Science and Engineering , City University of Hong Kong , Kowloon 999077 , Hong Kong SAR , P. R. China
| | - Dong Shen
- Center of Super-Diamond and Advanced Films (COSDAF) , City University of Hong Kong , Kowloon , Hong Kong SAR 999077 , P. R. China
- Department of Chemistry , City University of Hong Kong , Kowloon 999077 , Hong Kong SAR , P. R. China
| | - Menglin Li
- Center of Super-Diamond and Advanced Films (COSDAF) , City University of Hong Kong , Kowloon , Hong Kong SAR 999077 , P. R. China
- Department of Material Science and Engineering , City University of Hong Kong , Kowloon 999077 , Hong Kong SAR , P. R. China
| | - Chunqing Ma
- Center of Super-Diamond and Advanced Films (COSDAF) , City University of Hong Kong , Kowloon , Hong Kong SAR 999077 , P. R. China
- Department of Chemistry , City University of Hong Kong , Kowloon 999077 , Hong Kong SAR , P. R. China
| | - Wen-Cheng Chen
- Center of Super-Diamond and Advanced Films (COSDAF) , City University of Hong Kong , Kowloon , Hong Kong SAR 999077 , P. R. China
- Department of Chemistry , City University of Hong Kong , Kowloon 999077 , Hong Kong SAR , P. R. China
| | - Xiao Cui
- Center of Super-Diamond and Advanced Films (COSDAF) , City University of Hong Kong , Kowloon , Hong Kong SAR 999077 , P. R. China
- Department of Chemistry , City University of Hong Kong , Kowloon 999077 , Hong Kong SAR , P. R. China
| | - Bin Liu
- Center of Super-Diamond and Advanced Films (COSDAF) , City University of Hong Kong , Kowloon , Hong Kong SAR 999077 , P. R. China
- Department of Material Science and Engineering , City University of Hong Kong , Kowloon 999077 , Hong Kong SAR , P. R. China
| | - Ming-Fai Lo
- Center of Super-Diamond and Advanced Films (COSDAF) , City University of Hong Kong , Kowloon , Hong Kong SAR 999077 , P. R. China
- Department of Chemistry , City University of Hong Kong , Kowloon 999077 , Hong Kong SAR , P. R. China
| | - Sai-Wing Tsang
- Center of Super-Diamond and Advanced Films (COSDAF) , City University of Hong Kong , Kowloon , Hong Kong SAR 999077 , P. R. China
- Department of Material Science and Engineering , City University of Hong Kong , Kowloon 999077 , Hong Kong SAR , P. R. China
| | - Chun-Sing Lee
- Center of Super-Diamond and Advanced Films (COSDAF) , City University of Hong Kong , Kowloon , Hong Kong SAR 999077 , P. R. China
- Department of Chemistry , City University of Hong Kong , Kowloon 999077 , Hong Kong SAR , P. R. China
| | - Wenjun Zhang
- Center of Super-Diamond and Advanced Films (COSDAF) , City University of Hong Kong , Kowloon , Hong Kong SAR 999077 , P. R. China
- Department of Material Science and Engineering , City University of Hong Kong , Kowloon 999077 , Hong Kong SAR , P. R. China
| |
Collapse
|
7
|
Chayavanich K, Thiraphibundet P, Imyim A. Biocompatible film sensors containing red radish extract for meat spoilage observation. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2020; 226:117601. [PMID: 31622828 DOI: 10.1016/j.saa.2019.117601] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2018] [Revised: 07/22/2019] [Accepted: 10/06/2019] [Indexed: 06/10/2023]
Abstract
pH-sensitive films were developed based on biocompatible materials and natural pH sensitive dye. The films were successfully fabricated using starch/gelatin and red radish anthocyanin. The colors of films could be differentiated by naked eye within 5 min changing from orange to grey-purple at pH 2-12 and captured by a smartphone. The color parameters were evaluated by the Image J software. In addition, the color change of films was observed in ammonia gas atmosphere. The color stability of sensing films was evaluated and the results indicated that the films had great stability and were able to store more than two weeks. The results from intra-day and inter-day color response study showed good precision. Finally, the pH-sensitive films could be applied to real samples for real-time meat spoilage observation.
Collapse
Affiliation(s)
- Kasitnun Chayavanich
- Center of Excellence on Petrochemical and Materials Technology, Chulalongkorn University, Bangkok, 10330, Thailand; Department of Chemistry, Faculty of Science, Chulalongkorn University, Bangkok, 10330, Thailand
| | - Pattara Thiraphibundet
- Department of Chemistry, Faculty of Science, Chulalongkorn University, Bangkok, 10330, Thailand; Nanotec-CU Center of Excellence on Food and Agriculture, Department of Chemistry, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand
| | - Apichat Imyim
- Center of Excellence on Petrochemical and Materials Technology, Chulalongkorn University, Bangkok, 10330, Thailand; Department of Chemistry, Faculty of Science, Chulalongkorn University, Bangkok, 10330, Thailand.
| |
Collapse
|
8
|
Williams IM, Qasim LN, Tran L, Scott A, Riley K, Dutta S. C-D Vibration at C2 Position of Imidazolium Cation as a Probe of the Ionic Liquid Microenvironment. J Phys Chem A 2019; 123:6342-6349. [PMID: 31257885 DOI: 10.1021/acs.jpca.9b02387] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
Unlike molecular solvents, imidazolium-based ionic liquids are entirely made of ions with spatial heterogeneity. There is a need for spectroscopic probes that can assess the microenvironment near the cations of these complex liquids. In this manuscript, we describe simple chemical procedures to label the C2 position of imidazolium cation with a C-D vibrational probe and show, through linear and nonlinear vibrational spectroscopies, that this C-D stretching mode can be a useful analytical tool to assess both the solvent microenvironment and solute-solvent interactions in imidazolium-based ionic liquids from the cation point of view. It is expected that this C-D vibration probe on the cation will lead to the development of innovative experimental strategies that can provide a better understanding of such ionic liquids.
Collapse
Affiliation(s)
- Isis Marie Williams
- Department of Chemistry , Xavier University of Louisiana , New Orleans , Louisiana 70125 , United States
| | - Layla N Qasim
- Department of Chemistry , Tulane University , New Orleans , Louisiana 70118 , United States
| | - Ly Tran
- Department of Chemistry , Xavier University of Louisiana , New Orleans , Louisiana 70125 , United States
| | - Asia Scott
- Department of Chemistry , Xavier University of Louisiana , New Orleans , Louisiana 70125 , United States
| | - Kevin Riley
- Department of Chemistry , Xavier University of Louisiana , New Orleans , Louisiana 70125 , United States
| | - Samrat Dutta
- Department of Chemistry , Xavier University of Louisiana , New Orleans , Louisiana 70125 , United States
| |
Collapse
|
9
|
Gumus I, Solmaz U, Binzet G, Keskin E, Arslan B, Arslan H. Supramolecular self-assembly of new thiourea derivatives directed by intermolecular hydrogen bonds and weak interactions: crystal structures and Hirshfeld surface analysis. RESEARCH ON CHEMICAL INTERMEDIATES 2018. [DOI: 10.1007/s11164-018-3596-5] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
|
10
|
Courtney TL, Fox ZW, Slenkamp KM, Khalil M. Two-dimensional vibrational-electronic spectroscopy. J Chem Phys 2016; 143:154201. [PMID: 26493900 DOI: 10.1063/1.4932983] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023] Open
Abstract
Two-dimensional vibrational-electronic (2D VE) spectroscopy is a femtosecond Fourier transform (FT) third-order nonlinear technique that creates a link between existing 2D FT spectroscopies in the vibrational and electronic regions of the spectrum. 2D VE spectroscopy enables a direct measurement of infrared (IR) and electronic dipole moment cross terms by utilizing mid-IR pump and optical probe fields that are resonant with vibrational and electronic transitions, respectively, in a sample of interest. We detail this newly developed 2D VE spectroscopy experiment and outline the information contained in a 2D VE spectrum. We then use this technique and its single-pump counterpart (1D VE) to probe the vibrational-electronic couplings between high frequency cyanide stretching vibrations (νCN) and either a ligand-to-metal charge transfer transition ([Fe(III)(CN)6](3-) dissolved in formamide) or a metal-to-metal charge transfer (MMCT) transition ([(CN)5Fe(II)CNRu(III)(NH3)5](-) dissolved in formamide). The 2D VE spectra of both molecules reveal peaks resulting from coupled high- and low-frequency vibrational modes to the charge transfer transition. The time-evolving amplitudes and positions of the peaks in the 2D VE spectra report on coherent and incoherent vibrational energy transfer dynamics among the coupled vibrational modes and the charge transfer transition. The selectivity of 2D VE spectroscopy to vibronic processes is evidenced from the selective coupling of specific νCN modes to the MMCT transition in the mixed valence complex. The lineshapes in 2D VE spectra report on the correlation of the frequency fluctuations between the coupled vibrational and electronic frequencies in the mixed valence complex which has a time scale of 1 ps. The details and results of this study confirm the versatility of 2D VE spectroscopy and its applicability to probe how vibrations modulate charge and energy transfer in a wide range of complex molecular, material, and biological systems.
Collapse
Affiliation(s)
- Trevor L Courtney
- Department of Chemistry, University of Washington, Box 351700, Seattle, Washington 98195, USA
| | - Zachary W Fox
- Department of Chemistry, University of Washington, Box 351700, Seattle, Washington 98195, USA
| | - Karla M Slenkamp
- Department of Chemistry, University of Washington, Box 351700, Seattle, Washington 98195, USA
| | - Munira Khalil
- Department of Chemistry, University of Washington, Box 351700, Seattle, Washington 98195, USA
| |
Collapse
|
11
|
Chuntonov L. 2D-IR spectroscopy of hydrogen-bond-mediated vibrational excitation transfer. Phys Chem Chem Phys 2016; 18:13852-60. [DOI: 10.1039/c6cp01640e] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
Inter-molecular vibrational energy transfer in the hydrogen-bonded complexes of methyl acetate and 4-cyanophenol is studied by dual-frequency 2D-IR spectroscopy.
Collapse
Affiliation(s)
- Lev Chuntonov
- Schulich Faculty of Chemistry and Solid State Institute
- Technion – Israel Institute of Technology
- Haifa 32000
- Israel
| |
Collapse
|
12
|
Chuntonov L, Pazos IM, Ma J, Gai F. Kinetics of exchange between zero-, one-, and two-hydrogen-bonded states of methyl and ethyl acetate in methanol. J Phys Chem B 2015; 119:4512-20. [PMID: 25738661 DOI: 10.1021/acs.jpcb.5b00745] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
It has recently been shown that the ester carbonyl stretching vibration can be used as a sensitive probe of local electrostatic field in molecular systems. To further characterize this vibrational probe and extend its potential applications, we studied the kinetics of chemical exchange between differently hydrogen-bonded (H-bonded) ester carbonyl groups of methyl acetate (MA) and ethyl acetate (EA) in methanol. We found that, while both MA and EA can form zero, one, or two H-bonds with the solvent, the population of the 2hb state in MA is significantly smaller than that in EA. Using a combination of linear and nonlinear infrared measurements and numerical simulations, we further determined the rate constants for the exchange between these differently H-bonded states. We found that for MA the chemical exchange reaction between the two dominant states (i.e., 0hb and 1hb states) has a relaxation rate constant of 0.14 ps(-1), whereas for EA the three-state chemical exchange reaction occurs in a predominantly sequential manner with the following relaxation rate constants: 0.11 ps(-1) for exchange between 0hb and 1hb states and 0.12 ps(-1) for exchange between 1hb and 2hb states.
Collapse
Affiliation(s)
- Lev Chuntonov
- †Ultrafast Optical Processes Laboratory and ‡Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, United States
| | - Ileana M Pazos
- †Ultrafast Optical Processes Laboratory and ‡Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, United States
| | - Jianqiang Ma
- †Ultrafast Optical Processes Laboratory and ‡Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, United States
| | - Feng Gai
- †Ultrafast Optical Processes Laboratory and ‡Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, United States
| |
Collapse
|
13
|
De Marco L, Thämer M, Reppert M, Tokmakoff A. Direct observation of intermolecular interactions mediated by hydrogen bonding. J Chem Phys 2014; 141:034502. [DOI: 10.1063/1.4885145] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
Affiliation(s)
- Luigi De Marco
- Department of Chemistry, Massachusetts Institute of Technology, 77 Massachusetts Ave., Cambridge, Massachusetts 02139, USA
- Department of Chemistry, James Frank Institute and The Institute for Biophysical Dynamics, The University of Chicago, 929 E 57th Street, Chicago, Illinois 60637, USA
| | - Martin Thämer
- Department of Chemistry, James Frank Institute and The Institute for Biophysical Dynamics, The University of Chicago, 929 E 57th Street, Chicago, Illinois 60637, USA
| | - Mike Reppert
- Department of Chemistry, Massachusetts Institute of Technology, 77 Massachusetts Ave., Cambridge, Massachusetts 02139, USA
- Department of Chemistry, James Frank Institute and The Institute for Biophysical Dynamics, The University of Chicago, 929 E 57th Street, Chicago, Illinois 60637, USA
| | - Andrei Tokmakoff
- Department of Chemistry, James Frank Institute and The Institute for Biophysical Dynamics, The University of Chicago, 929 E 57th Street, Chicago, Illinois 60637, USA
| |
Collapse
|
14
|
Boyle ES, Neff-Mallon NA, Handali JD, Wright JC. Resonance IR: A Coherent Multidimensional Analogue of Resonance Raman. J Phys Chem A 2014; 118:3112-9. [DOI: 10.1021/jp5018554] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Erin S. Boyle
- Department of Chemistry, University of Wisconsin—Madison, 1101 University Avenue, Madison, Wisconsin 53706, United States
| | - Nathan A. Neff-Mallon
- Department of Chemistry, University of Wisconsin—Madison, 1101 University Avenue, Madison, Wisconsin 53706, United States
| | - Jonathan D. Handali
- Department of Chemistry, University of Wisconsin—Madison, 1101 University Avenue, Madison, Wisconsin 53706, United States
| | - John C. Wright
- Department of Chemistry, University of Wisconsin—Madison, 1101 University Avenue, Madison, Wisconsin 53706, United States
| |
Collapse
|
15
|
Chen H, Zhang Y, Li J, Liu H, Jiang DE, Zheng J. Vibrational Cross-Angles in Condensed Molecules: A Structural Tool. J Phys Chem A 2013; 117:8407-15. [DOI: 10.1021/jp406304c] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Hailong Chen
- Department
of Chemistry, Rice University, Houston, Texas 77005, United States
| | - Yufan Zhang
- Department
of Chemistry, Rice University, Houston, Texas 77005, United States
| | - Jiebo Li
- Department
of Chemistry, Rice University, Houston, Texas 77005, United States
| | - Hongjun Liu
- Chemical
Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - De-En Jiang
- Chemical
Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Junrong Zheng
- Department
of Chemistry, Rice University, Houston, Texas 77005, United States
| |
Collapse
|
16
|
Hamm P, Zewail AH, Fleming GR. A tribute to Robin Hochstrasser. Chem Phys 2013. [DOI: 10.1016/j.chemphys.2013.05.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
|
17
|
Maekawa H, Sul S, Ge NH. Vibrational correlation between conjugated carbonyl and diazo modes studied by single- and dual-frequency two-dimensional infrared spectroscopy. Chem Phys 2013. [DOI: 10.1016/j.chemphys.2013.02.010] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
|
18
|
Chen H, Bian H, Li J, Wen X, Zheng J. Relative Intermolecular Orientation Probed via Molecular Heat Transport. J Phys Chem A 2013; 117:6052-65. [DOI: 10.1021/jp312604v] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Hailong Chen
- Department of Chemistry, Rice University, Houston, Texas 77005, United States
| | - Hongtao Bian
- Department of Chemistry, Rice University, Houston, Texas 77005, United States
| | - Jiebo Li
- Department of Chemistry, Rice University, Houston, Texas 77005, United States
| | - Xiewen Wen
- Department of Chemistry, Rice University, Houston, Texas 77005, United States
| | - Junrong Zheng
- Department of Chemistry, Rice University, Houston, Texas 77005, United States
| |
Collapse
|
19
|
Nguyen TB, Laskin A, Laskin J, Nizkorodov SA. Brown carbon formation from ketoaldehydes of biogenic monoterpenes. Faraday Discuss 2013; 165:473-94. [DOI: 10.1039/c3fd00036b] [Citation(s) in RCA: 74] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
20
|
Kozai T, Yamashita S, Hirochi K, Miyagawa H, Tsurumachi N, Koshiba S, Nakanishi S, Itoh H. Molecular vibrational dynamics in polyvinyl alcohol studied by femtosecond coherent anti-stokes Raman spectroscopy. Chem Phys Lett 2012. [DOI: 10.1016/j.cplett.2012.09.057] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
|
21
|
Chen H, Bian H, Li J, Wen X, Zheng J. Ultrafast multiple-mode multiple-dimensional vibrational spectroscopy. INT REV PHYS CHEM 2012. [DOI: 10.1080/0144235x.2012.733116] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
|
22
|
Anna JM, Baiz CR, Ross MR, McCanne R, Kubarych KJ. Ultrafast equilibrium and non-equilibrium chemical reaction dynamics probed with multidimensional infrared spectroscopy. INT REV PHYS CHEM 2012. [DOI: 10.1080/0144235x.2012.716610] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
|
23
|
Affiliation(s)
- John C. Wright
- Department of Chemistry, University of Wisconsin–Madison, Madison, Wisconsin 53706;
| |
Collapse
|
24
|
Bian H, Li J, Wen X, Sun Z, Song J, Zhuang W, Zheng J. Mapping Molecular Conformations with Multiple-Mode Two-Dimensional Infrared Spectroscopy. J Phys Chem A 2011; 115:3357-65. [DOI: 10.1021/jp200516p] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
- Hongtao Bian
- Department of Chemistry, Rice University, Houston, Texas 77005, United States
| | - Jiebo Li
- Department of Chemistry, Rice University, Houston, Texas 77005, United States
| | - Xiewen Wen
- Department of Chemistry, Rice University, Houston, Texas 77005, United States
| | - Zhigang Sun
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, Liaoning, People’s Republic of China
| | - Jian Song
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, Liaoning, People’s Republic of China
| | - Wei Zhuang
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, Liaoning, People’s Republic of China
| | - Junrong Zheng
- Department of Chemistry, Rice University, Houston, Texas 77005, United States
| |
Collapse
|
25
|
Lin Z, Keiffer P, Rubtsov IV. A Method for Determining Small Anharmonicity Values from 2DIR Spectra Using Thermally Induced Shifts of Frequencies of High-Frequency Modes. J Phys Chem B 2010; 115:5347-53. [DOI: 10.1021/jp1094189] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Zhiwei Lin
- Department of Chemistry, Tulane University, New Orleans, Louisiana 70118, United States
| | - Patrick Keiffer
- Department of Chemistry, Tulane University, New Orleans, Louisiana 70118, United States
| | - Igor V. Rubtsov
- Department of Chemistry, Tulane University, New Orleans, Louisiana 70118, United States
| |
Collapse
|
26
|
Bian H, Wen X, Li J, Zheng J. Mode-specific intermolecular vibrational energy transfer. II. Deuterated water and potassium selenocyanate mixture. J Chem Phys 2010; 133:034505. [DOI: 10.1063/1.3458825] [Citation(s) in RCA: 61] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022] Open
|
27
|
Bian H, Li J, Wen X, Zheng J. Mode-specific intermolecular vibrational energy transfer. I. Phenyl selenocyanate and deuterated chloroform mixture. J Chem Phys 2010. [DOI: 10.1063/1.3429170] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022] Open
|
28
|
Lavoine JP. Simulation of four-wave mixing signals by a perturbative approach: application to ultrafast two-dimensional infrared spectroscopy. J Chem Phys 2009; 131:154110. [PMID: 20568850 DOI: 10.1063/1.3245857] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023] Open
Abstract
We propose an alternative method for the calculation of the phase-matched contributions, which are responsible for the third-order optical signals measured in four-wave mixing experiments. In particular, we extend the strong field dissipation theory of Meier and Tannor [J. Chem. Phys. 111, 3365 (1999)] to the case of a perturbative treatment with respect to the exciting laser fields. Our approach is based on an analytical expression of the third-order density matrix and hence it does not require to verify numerically the irrelevance of higher order terms or the calculation of a spatial Fourier transform. In order to illustrate this method, we simulate the experimental signal measured in femtosecond two-dimensional infrared (2D-IR) vibrational spectroscopy. We consider an intramolecular anharmonic vibrational mode modeled by a Morse potential and coupled to a dissipative bath of harmonic oscillators. We calculate the 2D-IR correlation spectrum and we discuss the influence of the population decay on the line shapes. In particular, we compare two situations, one where only pure dephasing processes are considered, and another one where phase losses due to population relaxation are also taken into account. We show that the shape of the peaks observed in a 2D-IR correlation spectrum differs in these two cases, and therefore this difference appears as a signature of population decay and gives information on the importance of pure dephasing processes in phase loss mechanisms.
Collapse
Affiliation(s)
- J P Lavoine
- Département d'Optique ultra-rapide et de Nanophotonique, Institut de Physique et Chimie des Matériaux de Strasbourg, UMR 7504 ULP-CNRS, 23 Rue du Loess, B.P. 43, 67034 Strasbourg Cedex 2, France.
| |
Collapse
|
29
|
Bian H, Zhao W, Zheng J. Intermolecular vibrational energy exchange directly probed with ultrafast two dimensional infrared spectroscopy. J Chem Phys 2009; 131:124501. [DOI: 10.1063/1.3212618] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
|
30
|
Rubtsov IV. Relaxation-assisted two-dimensional infrared (RA 2DIR) method: accessing distances over 10 A and measuring bond connectivity patterns. Acc Chem Res 2009; 42:1385-94. [PMID: 19462972 DOI: 10.1021/ar900008p] [Citation(s) in RCA: 87] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
Development of new approaches for measuring three-dimensional structures and dynamics of structural changes is important for a number of natural sciences, including structural biology, where it can lead to understanding the physical bases of molecular recognition and catalysis. A two-dimensional infrared (2DIR) spectroscopy method permits measuring pairwise interactions among vibrational modes in molecules providing a molecular scale ruler for delivering structural constraints, such as the distances between the vibrational modes, angles between their transition dipoles, and the energy-transfer rates between them. While there is a large variety of systems that have recently been interrogated using 2DIR, questions remain of how to measure structural features of larger molecules. The challenges of working with larger molecules, such as proteins, include very congested vibrational spectra, a small range of distances accessible by the 2DIR method, and sensitivity issues. This Account describes the efforts of our laboratory to overcome some of these challenges. First, we discuss the dual-frequency 2DIR approach, which provides the highest selectivity to a particular pair of vibrational reporters and highest sensitivity. Second, we describe our steps in developing vibrational labels, novel for 2DIR, such as C identical withN and C-D stretching modes that have frequencies in the water transparency region, as well as the modes in the fingerprint region. The schemes suitable for labeling amino acids are discussed. Next, we describe the novel relaxation-assisted 2DIR (RA 2DIR) method, developed in our laboratory. The method uses vibrational relaxation and vibrational energy transport in molecules and the thermalization process on a molecular scale, to generate stronger cross-peaks. An 18-fold cross-peak amplification was observed for the modes separated by about 11 A using the RA 2DIR method, and larger amplifications are expected for larger distances between the modes. Large amplification provided by the RA 2DIR method enhances the sensitivity of 2DIR spectroscopy and permits longer range structural measurements. In addition to generating stronger cross-peaks, a correlation of the energy transport time with the intermode distance is demonstrated. This correlation permits measurements of mode-connectivity patterns in molecules much similar to those available in total correlation spectroscopy (TOCSY) and heteronuclear multiple-bond correlation (HMBC) methods of 2D nuclear magnetic resonance (NMR) spectroscopy. It is our hope that, with a proper calibration, the RA 2DIR method will permit speedy assessments of distances and the bond connectivity patterns in molecules and reach the level of an analytical method.
Collapse
Affiliation(s)
- Igor V. Rubtsov
- Department of Chemistry, Tulane University, New Orleans, Louisiana 70118
| |
Collapse
|
31
|
Kim YS, Hochstrasser RM. Applications of 2D IR spectroscopy to peptides, proteins, and hydrogen-bond dynamics. J Phys Chem B 2009; 113:8231-51. [PMID: 19351162 PMCID: PMC2845308 DOI: 10.1021/jp8113978] [Citation(s) in RCA: 245] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Following a survey of 2D IR principles, this article describes recent experiments on the hydrogen-bond dynamics of small ions, amide-I modes, nitrile probes, peptides, reverse transcriptase inhibitors, and amyloid fibrils.
Collapse
Affiliation(s)
- Yung Sam Kim
- Department of Chemistry, University of Pennsylvania Philadelphia, Pennsylvania 19104-6323, U.S.A
| | - Robin M. Hochstrasser
- Department of Chemistry, University of Pennsylvania Philadelphia, Pennsylvania 19104-6323, U.S.A
| |
Collapse
|
32
|
Naraharisetty SRG, Kasyanenko VM, Zimmermann J, Thielges MC, Romesberg FE, Rubtsov IV. C-D modes of deuterated side chain of leucine as structural reporters via dual-frequency two-dimensional infrared spectroscopy. J Phys Chem B 2009; 113:4940-6. [PMID: 19298041 DOI: 10.1021/jp8112446] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Perdeuteration of the side chains of amino acids such as leucine results in appearance of reasonably strong absorption peaks around 2050-2220 cm(-1) that belong to the CD stretching modes and exhibit extinction coefficients of up to 120 M(-1) cm(-1). The properties of the CD stretching transitions in leucine-d(10) as structural labels are studied via the methods of two-dimensional infrared (2DIR) spectroscopy. The cross peaks caused by interactions of the CD stretching modes with amide I (Am-I), CO, and amide II (Am-II) modes are obtained by the dual-frequency 2DIR method. The CD stretching peaks in leucine-d(10) are characterized using DFT computational modeling as well as relaxation-assisted 2DIR (RA 2DIR) measurements. The RA 2DIR measurements showed different enhancements and different energy transport times (arrival times) for different CD/Am-II and CD/CO cross peaks; a correlation between the intermode distance, the arrival time, and the amplification factor is reported. We demonstrated that the CD transitions of leucine-d(10) amino acid can serve as convenient structural reporters via the dual-frequency 2DIR methods and discussed the potential of leucine-d(10) and other amino acids with deuterium-labeled side chains as probes of protein structure and dynamics.
Collapse
|
33
|
Li YL, Huang L, Dwayne Miller RJ, Hasegawa T, Tanimura Y. Two-dimensional fifth-order Raman spectroscopy of liquid formamide: Experiment and Theory. J Chem Phys 2008; 128:234507. [DOI: 10.1063/1.2927311] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
|
34
|
Naraharisetty SRG, Kasyanenko VM, Rubtsov IV. Bond connectivity measured via relaxation-assisted two-dimensional infrared spectroscopy. J Chem Phys 2008; 128:104502. [PMID: 18345901 DOI: 10.1063/1.2842071] [Citation(s) in RCA: 65] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022] Open
Abstract
The relaxation-assisted two-dimensional infrared (RA 2DIR) method is a novel technique for probing structures of molecules, which relies on vibrational energy transport in molecules. In this article we demonstrate the ability of RA 2DIR to detect the bond connectivity patterns in molecules using two parameters, a characteristic intermode energy transport time (arrival time) and a cross-peak amplification coefficient. A correlation of the arrival time with the distance between the modes is demonstrated. An 18-fold amplification of the cross-peak amplitude for the modes separated by approximately 11 A is shown using RA 2DIR; larger cross-peak amplifications are expected for the modes separated by larger distances. The RA 2DIR method enhances the applicability of 2DIR spectroscopy by making practical the long-range measurements using a variety of structural reporters, including weak IR modes. The data presented demonstrate the analytical power of RA 2DIR which permits the speedy structural assessments of the bond connectivity patterns.
Collapse
|
35
|
Donaldson PM, Guo R, Fournier F, Gardner EM, Gould IR, Klug DR. Decongestion of methylene spectra in biological and non-biological systems using picosecond 2DIR spectroscopy measuring electron-vibration–vibration coupling. Chem Phys 2008. [DOI: 10.1016/j.chemphys.2008.02.050] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
|
36
|
Affiliation(s)
- Minhaeng Cho
- Department of Chemistry and Center for Multidimensional Spectroscopy, Korea University, Seoul 136-701, Korea.
| |
Collapse
|
37
|
Hasegawa T, Tanimura Y. Nonequilibrium molecular dynamics simulations with a backward-forward trajectories sampling for multidimensional infrared spectroscopy of molecular vibrational modes. J Chem Phys 2008; 128:064511. [DOI: 10.1063/1.2828189] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023] Open
|
38
|
Reckien W, Spickermann C, Eggers M, Kirchner B. Theoretical energetic and vibrational analysis of amide-templated pseudorotaxanes. Chem Phys 2008. [DOI: 10.1016/j.chemphys.2007.09.027] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
|
39
|
Kuo CH, Vorobyev DY, Chen J, Hochstrasser RM. Correlation of the vibrations of the aqueous azide ion with the O-H modes of bound water molecules. J Phys Chem B 2007; 111:14028-33. [PMID: 18044873 DOI: 10.1021/jp076503+] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Dual frequency two-dimensional infrared spectroscopy (2D-IR) has been used to investigate the dynamics of the azide-water solvation shell. The memory of the azide transition frequencies is detected in the echo emitted by the OH stretching mode of the ion-bound water molecules. There is a significant positive correlation of the two frequency distributions that decays on a 140 fs time scale. The result confirms that the O-H bond of water molecules in the solvent shell have frequency fluctuations that are considerably slowed from those that are known in bulk water. The positive correlation is attributed to cooperative interactions of coordinated water molecules with an azide ion.
Collapse
Affiliation(s)
- Chun-Hung Kuo
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323, USA
| | | | | | | |
Collapse
|
40
|
Ishizaki A, Tanimura Y. Dynamics of a Multimode System Coupled to Multiple Heat Baths Probed by Two-Dimensional Infrared Spectroscopy. J Phys Chem A 2007; 111:9269-76. [PMID: 17880172 DOI: 10.1021/jp072880a] [Citation(s) in RCA: 76] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Reduced equation of motion for a multimode system coupled to multiple heat baths is constructed by extending the quantum Fokker-Planck equation with low-temperature correction terms (J. Phys. Soc. Jpn. 2005, 74, 3131). Unlike such common approaches used to describe intramolecular multimode vibration as a Bloch-Redfield theory and a stochastic theory, the present formalism is defined by the molecular coordinates. To explore the correlation among different modes through baths, we consider two cases of system-bath couplings. One is a correlated case in which two modes are coupled to a single bath, and the other is an uncorrelated case in which each mode is coupled to a different bath. We further classify the correlated case into two cases, the plus- and minus-correlated cases, according to distinct correlation manners. For these, one-dimensional and two-dimensional infrared (2D-IR) spectra are calculated numerically by solving the equation of motion. It is demonstrated that 2D-IR spectroscopy has the ability to analyze the correlation of fluctuation-dissipation processes among different modes.
Collapse
Affiliation(s)
- Akihito Ishizaki
- Department of Chemistry, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan.
| | | |
Collapse
|
41
|
Hochstrasser RM. Two-dimensional spectroscopy at infrared and optical frequencies. Proc Natl Acad Sci U S A 2007; 104:14190-6. [PMID: 17664429 PMCID: PMC1964834 DOI: 10.1073/pnas.0704079104] [Citation(s) in RCA: 249] [Impact Index Per Article: 14.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2007] [Indexed: 11/18/2022] Open
Abstract
This Perspective on multidimensional spectroscopy in the optical and infrared spectral regions focuses on the principles and the scientific and technical challenges facing these new fields. The methods hold great promise for advances in the visualization of time-dependent structural changes in complex systems ranging from liquids to biological assemblies, new materials, and fundamental physical processes. The papers in this special feature on multidimensional spectroscopy in chemistry, physics, and biology are typical of many recent advances.
Collapse
Affiliation(s)
- Robin M Hochstrasser
- Department of Chemistry, University of Pennsylvania, Philadelphia, PA 19104-6323, USA.
| |
Collapse
|
42
|
Sul S, Karaiskaj D, Jiang Y, Ge NH. Conformations of N-acetyl-L-prolinamide by two-dimensional infrared spectroscopy. J Phys Chem B 2007; 110:19891-905. [PMID: 17020375 DOI: 10.1021/jp062039h] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Femtosecond two-dimensional infrared (2D IR) spectroscopy has been applied to study the conformations of a model dipeptide, N-acetyl-L-prolinamide (AcProNH2) in deuterated chloroform (CDCl3). Spectral features in the amide-I and -II regions are obtained by rephasing (R), nonrephasing (NR), and reverse photon echo (RPE) pulse sequences with two polarization conditions. The 2D spectra obtained by the RPE and NR sequences with (0, 0, 0, 0) polarization reveal new spectral features associated with the multiple conformers of AcProNH2 that are difficult to discern using R sequence and linear-IR spectroscopy. The high resolving power of the RPE sequence comes from destructive interference between the positive and negative peaks of nearby vibrators, similar to the NR sequence. The RPE response functions that are useful for 2D spectral simulations are evaluated, including the effects of vibrational frequency correlations. The 2D spectra obtained with (45, -45, 90, 0) polarization exhibit clear cross-peak patterns in the off-diagonal region for the R and RPE sequences but in the diagonal region for the NR sequence. These patterns, free from strong diagonal contributions, are crucial for structure determination. DFT calculations, normal-mode analysis, Hessian matrix reconstruction, and vibrational exciton Hamiltonian diagonalization yield molecular parameters needed for quantitative simulations of 2D spectra: angles between transition dipoles, coupling constants, and off-diagonal anharmonicities of the amide-I and -II modes are obtained for solvated trans-C7 and cis structures and for gas-phase trans conformers in the region of phi = -120 degrees to 0 degrees and psi = -100 degrees to 180 degrees in the Ramachandran space. Systematic simulations based on a 4:1 population ratio of the solvated trans-C7 and cis structures reproduce well the 2D spectral features obtained at both polarization conditions. However, better agreement between the experimental and simulated cross-peak patterns can be reached if the dihedral angles of the major trans conformer are close to (phi, psi) = (-80 degrees , 100 degrees ). Our results suggest that the major conformer of AcProNH2 in CDCl3 deviates from the gas-phase global minimum, the trans-C7 form, to an extended intermediate between the C7 and polyproline-II structure. These results are discussed in relationship with earlier findings obtained by NMR, transient IR studies, and MD simulations.
Collapse
Affiliation(s)
- Soohwan Sul
- Department of Chemistry, University of California, Irvine, California 92697-2025, USA
| | | | | | | |
Collapse
|
43
|
Abstract
The principal contributions to the anharmonic coupling of amide vibrations are explored with the objective of comparing recent experiments with density functional theory and evaluating simple models of mode coupling. Experimental information obtained by means of two-dimensional infrared spectroscopy (2D IR) is reasonably well predicted by the computed one- and two-quantum anharmonic modes of amide-A, -I, and -II types in mono-, di- and tripeptides. The expansion of the vibrational energy up to the cubic and quartic coupling of harmonic modes suggested criteria to assess how localized are the forces determining the anharmonicity. The off-diagonal anharmonicity between an amide-A and one other amide mode was shown to be mainly determined by forces involving only these two modes, whereas the off-diagonal anharmonicity of two amide-I modes in peptides depended significantly on forces due to motions other than those of the amide-I type. Both the diagonal and off-diagonal anharmonicities exhibit sensitivity to peptide structures. These results should prove useful in linking 2D IR experimental results to secondary structure. Further, the results are used to evaluate the vibrational exciton model for the mixed-mode anharmonicities of the amide-I transitions.
Collapse
Affiliation(s)
- Jianping Wang
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323, USA
| | | |
Collapse
|
44
|
Groot ML, van Wilderen LJGW, Di Donato M. Time-resolved methods in biophysics. 5. Femtosecond time-resolved and dispersed infrared spectroscopy on proteins. Photochem Photobiol Sci 2007; 6:501-7. [PMID: 17487299 DOI: 10.1039/b613023b] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
In this contribution we describe how femtosecond time-resolved infrared spectroscopy provides insight into the function and dynamics of pigment-protein complexes, and what the technical requirements are to perform such experiments. We further discuss a few examples of experiments performed on the photoactive yellow protein and photosynthetic complexes in more detail.
Collapse
Affiliation(s)
- Marie Louise Groot
- Department of Physics and Astronomy, Faculty of Sciences, Vrije Universiteit, De Boelelaan 1081, 1081 HV, Amsterdam, The Netherlands.
| | | | | |
Collapse
|
45
|
Nee MJ, McCanne R, Kubarych KJ, Joffre M. Two-dimensional infrared spectroscopy detected by chirped pulse upconversion. OPTICS LETTERS 2007; 32:713-5. [PMID: 17308611 DOI: 10.1364/ol.32.000713] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
A two-dimensional (2D) infrared spectrum of Mn2(CO)10 is measured by using chirped-pulse upconversion (CPU) of the nonlinear signal field plus a reference local oscillator. By converting the spectrum to the visible, a silicon CCD camera can be used. The method offers an attractive alternative to direct IR detection due to the technological maturity of silicon and its greater intrinsic detectivity over HgCdTe. Using CPU, we acquired a rephasing 2D IR spectrum in a few seconds.
Collapse
Affiliation(s)
- Matthew J Nee
- Department of Chemistry, University of Michigan, Ann Arbor 48109, USA
| | | | | | | |
Collapse
|
46
|
Reckien W, Kirchner B, Peyerimhoff SD. Frequency Analysis of Amide-Linked Rotaxane Mimetics. J Phys Chem A 2006; 110:12963-70. [PMID: 17125313 DOI: 10.1021/jp065327m] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A vibrational analysis of 2-fold hydrogen bonds between an isophthalic amide donor and different acceptors is presented. These systems can be considered as mimetics for the hydrogen-binding situation of numerous supramolecular compounds such as rotaxanes, catenanes, knotanes, and anion receptors. We calculated pronounced red-shifts up to 65 cm(-1) for the stretching modes of the acceptor carbonyl as well as for the donor NH2 groups, whereas we observe a blue shift for the NH2 bending modes and an additional weak hydrogen bond between the acceptor and the middle C-H group of the donor. The red and blue shifts observed for different modes in various complexes have been correlated with the binding energy of the complexes, independently. In comparison with comparable single hydrogen bonds, we find for the 2-fold hydrogen bonds smaller red shifts for the N-H stretch modes of the donor but larger red shifts for the C=O stretch mode of the acceptor. Furthermore, our results indicate that the pronounced blue shift of the C-H stretch mode is basically caused by the fact that the acceptor is fixed directly above this group due to the 2-fold hydrogen bond.
Collapse
Affiliation(s)
- Werner Reckien
- Theoretische Chemie, Institut für Physikalische und Theoretische Chemie, Universität Bonn, Wegelerstrasse 12, D-53115 Bonn, Germany
| | | | | |
Collapse
|
47
|
Ishizaki A, Tanimura Y. Modeling vibrational dephasing and energy relaxation of intramolecular anharmonic modes for multidimensional infrared spectroscopies. J Chem Phys 2006; 125:084501. [PMID: 16965023 DOI: 10.1063/1.2244558] [Citation(s) in RCA: 100] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Starting from a system-bath Hamiltonian in a molecular coordinate representation, we examine an applicability of a stochastic multilevel model for vibrational dephasing and energy relaxation in multidimensional infrared spectroscopy. We consider an intramolecular anharmonic mode nonlinearly coupled to a colored noise bath at finite temperature. The system-bath interaction is assumed linear plus square in the system coordinate, but linear in the bath coordinates. The square-linear system-bath interaction leads to dephasing due to the frequency fluctuation of system vibration, while the linear-linear interaction contributes to energy relaxation and a part of dephasing arises from anharmonicity. To clarify the role and origin of vibrational dephasing and energy relaxation in the stochastic model, the system part is then transformed into an energy eigenstate representation without using the rotating wave approximation. Two-dimensional (2D) infrared spectra are then calculated by solving a low-temperature corrected quantum Fokker-Planck (LTC-QFP) equation for a colored noise bath and by the stochastic theory. In motional narrowing regime, the spectra from the stochastic model are quite different from those from the LTC-QFP. In spectral diffusion regime, however, the 2D line shapes from the stochastic model resemble those from the LTC-QFP besides the blueshifts caused by the dissipation from the colored noise bath. The preconditions for validity of the stochastic theory for molecular vibrational motion are also discussed.
Collapse
Affiliation(s)
- Akihito Ishizaki
- Department of Chemistry, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan.
| | | |
Collapse
|
48
|
DeFlores LP, Ganim Z, Ackley SF, Chung HS, Tokmakoff A. The Anharmonic Vibrational Potential and Relaxation Pathways of the Amide I and II Modes of N-Methylacetamide. J Phys Chem B 2006; 110:18973-80. [PMID: 16986892 DOI: 10.1021/jp0603334] [Citation(s) in RCA: 115] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We investigate the influence of isotopic substitution and solvation of N-methylacetamide (NMA) on anharmonic vibrational coupling and vibrational relaxation of the amide I and amide II modes. Differences in the anharmonic potential of isotopic derivatives of NMA in D2O and DMSO-d6 are quantified by extraction of the anharmonic parameters and the transition dipole moment angles from cross-peaks in the two-dimensional infrared (2D-IR) spectra. To interpret the effects of isotopic substitution and solvent interaction on the anharmonic potential, density functional theory and potential energy distribution calculations are performed. It is shown that the origin of anharmonic variation arises from differing local mode contributions to the normal modes of the NMA isotopologues, particularly in amide II. The time domain manifestation of the coupling is the coherent exchange of excitation between amide modes seen as the quantum beats in femtosecond pump-probes. The biphasic behavior of population relaxation of the pump-probe and 2D-IR experiments can be understood by the rapid exchange of strongly coupled modes within the peptide backbone, followed by picosecond dissipation into weakly coupled modes of the bath.
Collapse
Affiliation(s)
- Lauren P DeFlores
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
| | | | | | | | | |
Collapse
|
49
|
Affiliation(s)
- Robin M Hochstrasser
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
| |
Collapse
|
50
|
Park J, Hochstrasser RM. Multidimensional infrared spectroscopy of a peptide intramolecular hydrogen bond. Chem Phys 2006. [DOI: 10.1016/j.chemphys.2005.08.066] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
|