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For: Kawashima Y, Sugita Y, Yoda T, Okamoto Y. Effects of the fixed end in single-molecule imaging techniques: A replica-exchange molecular dynamics simulation study. Chem Phys Lett 2005. [DOI: 10.1016/j.cplett.2005.07.120] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Number Cited by Other Article(s)
1
Xu X, Xiao X, Xu S, Liu H. Computational insights into the destabilization of α-helical conformations formed by leucine zipper peptides in response to temperature. Phys Chem Chem Phys 2018;18:25465-25473. [PMID: 27722604 DOI: 10.1039/c6cp05145f] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
2
Nuclear quantum effect and temperature dependency on the hydrogen-bonded structure of 7-azaindole dimer. Theor Chem Acc 2014. [DOI: 10.1007/s00214-014-1553-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
3
Daido M, Kawashima Y, Tachikawa M. Nuclear quantum effect and temperature dependency on the hydrogen-bonded structure of base pairs. J Comput Chem 2013;34:2403-11. [DOI: 10.1002/jcc.23399] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2013] [Revised: 06/28/2013] [Accepted: 07/05/2013] [Indexed: 11/12/2022]
4
Omelyan I, Kovalenko A. Generalised canonical–isokinetic ensemble: speeding up multiscale molecular dynamics and coupling with 3D molecular theory of solvation. MOLECULAR SIMULATION 2013. [DOI: 10.1080/08927022.2012.700486] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
5
Omelyan IP, Kovalenko A. Multiple time scale molecular dynamics for fluids with orientational degrees of freedom. II. Canonical and isokinetic ensembles. J Chem Phys 2012;135:234107. [PMID: 22191864 DOI: 10.1063/1.3669385] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]  Open
6
Abraham MJ, Gready JE. Ensuring Mixing Efficiency of Replica-Exchange Molecular Dynamics Simulations. J Chem Theory Comput 2008;4:1119-28. [DOI: 10.1021/ct800016r] [Citation(s) in RCA: 65] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
7
Miyata T, Hirata F. Combination of molecular dynamics method and 3D-RISM theory for conformational sampling of large flexible molecules in solution. J Comput Chem 2008;29:871-82. [PMID: 17963231 DOI: 10.1002/jcc.20844] [Citation(s) in RCA: 61] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
8
Kawashima Y, Sasaki YC, Sugita Y, Yoda T, Okamoto Y. Replica-exchange molecular dynamics simulation of diffracted X-ray tracking. MOLECULAR SIMULATION 2007. [DOI: 10.1080/08927020601067581] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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