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Nucleophilic substitution vs elimination reaction of bisulfide ions with substituted methanes: exploration of chiral selectivity by stereodirectional first-principles dynamics and transition state theory. J Mol Model 2019; 25:227. [PMID: 31317347 DOI: 10.1007/s00894-019-4126-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2019] [Accepted: 07/07/2019] [Indexed: 10/26/2022]
Abstract
Control of molecular orientation is emerging as crucial for the characterization of the stereodynamics of kinetics processes beyond structural stereochemistry. The special role played in chiral discrimination phenomena has been particularly emphasized by Aquilanti and collaborators after their extensive probes of experimental control of molecular alignment and orientation. In this work, the manifestation of the Aquilanti mechanism has been demonstrated for the first time in first-principles molecular dynamics simulations: stationary points characterized on potential energy surfaces have been calculated for the study of chemical reactions occurring between the bisulfide anion HS- and oriented prototypical chiral molecules CHFXY (where X = CH3 or CN and Y = Cl or I). The important reaction channels are those corresponding to bimolecular nucleophilic substitution (SN2) and to bimolecular elimination (E2): their relative role has been assessed and alternative pathways due to the mirror forms of the oriented chiral molecule are revealed by the different reactivity of the two enantiomers of CHFCNI in SN2 reaction.
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Nakamura M, Yang SJ, Tsai PY, Kasai T, Lin KC, Che DC, Lombardi A, Palazzetti F, Aquilanti V. Hexapole-Oriented Asymmetric-Top Molecules and Their Stereodirectional Photodissociation Dynamics. J Phys Chem A 2016; 120:5389-98. [PMID: 27139246 DOI: 10.1021/acs.jpca.6b02410] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Molecular orientation is a fundamental requisite in the study of stereodirected dynamics of collisional and photoinitiated processes. In this past decade, variable hexapolar electric filters have been developed and employed for the rotational-state selection and the alignment of molecules of increasing complexity, for which the main difficulties are their mass, their low symmetry, and the very dense rotational manifold. In this work, for the first time, a complex molecule such as 2-bromobutane, an asymmetric top containing a heavy atom (the bromine), was successfully oriented by a weak homogeneous field placed downstream from the hexapolar filter. Efficiency of the orientation was characterized experimentally, by combining time-of-flight measurements and a slice-ion-imaging detection technique. The application is described to the photodissociation dynamics of the oriented 2-bromobutane, which was carried out at a laser wavelength of 234 nm, corresponding to the breaking of the C-Br bond. The Br photofragment is produced in both the ground Br ((2)P3/2) and the excited Br ((2)P1/2) electronic states, and both channels are studied by the slice imaging technique, revealing new features in the velocity and angular distributions with respect to previous investigations on nonoriented molecules.
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Affiliation(s)
- Masaaki Nakamura
- Department of Chemistry, National Taiwan University , Taipei, Taiwan
| | - Shiun-Jr Yang
- Department of Chemistry, National Taiwan University , Taipei, Taiwan
| | - Po-Yu Tsai
- Department of Chemistry, National Taiwan University , Taipei, Taiwan.,Department of Chemistry, National Chung-Hsing University , Taichung, Taiwan
| | - Toshio Kasai
- Department of Chemistry, National Taiwan University , Taipei, Taiwan
| | - King-Chuen Lin
- Department of Chemistry, National Taiwan University , Taipei, Taiwan.,Institute of Atomic and Molecular Sciences, Academia Sinica , Taipei, Taiwan
| | - Dock-Chil Che
- Graduate School of Science, Department of Chemistry, Osaka University , Osaka, Japan
| | - Andrea Lombardi
- Dipartimento di Chimica, Biologia e Biotecnologie, Università di Perugia , Perugia, Italy
| | - Federico Palazzetti
- Dipartimento di Chimica, Biologia e Biotecnologie, Università di Perugia , Perugia, Italy.,Scuola Normale Superiore , Pisa, Italy
| | - Vincenzo Aquilanti
- Dipartimento di Chimica, Biologia e Biotecnologie, Università di Perugia , Perugia, Italy.,Consiglio Nazionale delle Ricerche, Istituto di Struttura della Materia , 00016 Roma, Italy.,Insituto de Fìsica, Universidade Federal da Bahia , Salvador, Brazil
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Kasai T, Che DC, Okada M, Tsai PY, Lin KC, Palazzetti F, Aquilanti V. Directions of chemical change: experimental characterization of the stereodynamics of photodissociation and reactive processes. Phys Chem Chem Phys 2014; 16:9776-90. [DOI: 10.1039/c4cp00464g] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Che DC, Palazzetti F, Okuno Y, Aquilanti V, Kasai T. Electrostatic hexapole state-selection of the asymmetric-top molecule propylene oxide. J Phys Chem A 2010; 114:3280-6. [PMID: 20099859 DOI: 10.1021/jp909553t] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Rotational state-selection of the asymmetric-top molecule propylene oxide was carried out using an electrostatic hexapole field of 85-cm length. Molecular beam intensities were monitored by a quadrupole mass spectrometer. It was found that beam intensities of molecular beams for pure propylene oxide and those seeded in He and in Ar increased with increasing hexapole voltages. The hexapole voltage dependence of the beam intensity, which is called the focusing curve, was interpreted by computer simulation of the trajectories of molecules in the hexapolar field due to the Stark effect, as a function of rotational temperatures of molecular beams. The calculated best fit focusing curves, when compared with the experimental results, demonstrated that the rotational temperatures, associated with the distribution of states of a given rotational angular momentum J, are similar to the translational temperatures. It was found that the M = 0 states (where M is the projection of J along the direction of the electrostatic field) and negative values of the pseudoquantum number tau of propylene oxide can be selected using our experimental setup. These results suggest that the hexapole electric field is a tool even for the selection of rotational and orientation states of asymmetric-top molecules.
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Affiliation(s)
- Dock-Chil Che
- Department of Chemistry, Graduate School of Science, Osaka University, Toyonaka, Osaka, 560-0043, Japan.
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Maciel GS, Barreto PRP, Palazzetti F, Lombardi A, Aquilanti V. A quantum chemical study of H2S2: Intramolecular torsional mode and intermolecular interactions with rare gases. J Chem Phys 2008; 129:164302. [DOI: 10.1063/1.2994732] [Citation(s) in RCA: 57] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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Pirani F, Cappelletti D, Bartolomei M, Aquilanti V, Demarchi G, Tosi P, Scotoni M. The collisional alignment of acetylene molecules in supersonic seeded expansions probed by infrared absorption and molecular beam scattering. Chem Phys Lett 2007. [DOI: 10.1016/j.cplett.2007.02.028] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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