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Gao S, Chang L, Perc M, Wang Z. Turing patterns in simplicial complexes. Phys Rev E 2023; 107:014216. [PMID: 36797896 DOI: 10.1103/physreve.107.014216] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2022] [Accepted: 12/06/2022] [Indexed: 02/18/2023]
Abstract
The spontaneous emergence of patterns in nature, such as stripes and spots, can be mathematically explained by reaction-diffusion systems. These patterns are often referred as Turing patterns to honor the seminal work of Alan Turing in the early 1950s. With the coming of age of network science, and with its related departure from diffusive nearest-neighbor interactions to long-range links between nodes, additional layers of complexity behind pattern formation have been discovered, including irregular spatiotemporal patterns. Here we investigate the formation of Turing patterns in simplicial complexes, where links no longer connect just pairs of nodes but can connect three or more nodes. Such higher-order interactions are emerging as a new frontier in network science, in particular describing group interaction in various sociological and biological systems, so understanding pattern formation under these conditions is of the utmost importance. We show that a canonical reaction-diffusion system defined over a simplicial complex yields Turing patterns that fundamentally differ from patterns observed in traditional networks. For example, we observe a stable distribution of Turing patterns where the fraction of nodes with reactant concentrations above the equilibrium point is exponentially related to the average degree of 2-simplexes, and we uncover parameter regions where Turing patterns will emerge only under higher-order interactions, but not under pairwise interactions.
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Affiliation(s)
- Shupeng Gao
- School of Mechanical Engineering, Northwestern Polytechnical University, Xi'an 710072, China.,School of Artificial Intelligence, Optics, and Electronics (iOPEN), Northwestern Polytechnical University, Xi'an 710072, China
| | - Lili Chang
- Complex Systems Research Center, Shanxi University, Taiyuan 030006, China.,Shanxi Key Laboratory of Mathematical Techniques and Big Data Analysis for Disease Control and Prevention, Taiyuan 030006, China
| | - Matjaž Perc
- Faculty of Natural Sciences and Mathematics, University of Maribor, Koroška cesta 160, 2000 Maribor, Slovenia.,Department of Medical Research, China Medical University Hospital, China Medical University, Taichung 404332, Taiwan.,Alma Mater Europaea, Slovenska ulica 17, 2000 Maribor, Slovenia.,Complexity Science Hub Vienna, Josefstädterstraße 39, 1080 Vienna, Austria.,Department of Physics, Kyung Hee University, 26 Kyungheedae-ro, Dongdaemun-gu, Seoul, Republic of Korea
| | - Zhen Wang
- School of Mechanical Engineering, Northwestern Polytechnical University, Xi'an 710072, China.,School of Artificial Intelligence, Optics, and Electronics (iOPEN), Northwestern Polytechnical University, Xi'an 710072, China
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2
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Gao S, Chang L, Romić I, Wang Z, Jusup M, Holme P. Optimal control of networked reaction-diffusion systems. J R Soc Interface 2022; 19:20210739. [PMID: 35259961 PMCID: PMC8905157 DOI: 10.1098/rsif.2021.0739] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2021] [Accepted: 02/08/2022] [Indexed: 12/16/2022] Open
Abstract
Patterns in nature are fascinating both aesthetically and scientifically. Alan Turing's celebrated reaction-diffusion model of pattern formation from the 1950s has been extended to an astounding diversity of applications: from cancer medicine, via nanoparticle fabrication, to computer architecture. Recently, several authors have studied pattern formation in underlying networks, but thus far, controlling a reaction-diffusion system in a network to obtain a particular pattern has remained elusive. We present a solution to this problem in the form of an analytical framework and numerical algorithm for optimal control of Turing patterns in networks. We demonstrate our method's effectiveness and discuss factors that affect its performance. We also pave the way for multidisciplinary applications of our framework beyond reaction-diffusion models.
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Affiliation(s)
- Shupeng Gao
- School of Mechanical Engineering, Northwestern Polytechnical University, Xi’an 710072, People’s Republic of China
- School of Artificial Intelligence, Optics, and Electronics (iOPEN), Northwestern Polytechnical University, Xi’an 710072, People’s Republic of China
| | - Lili Chang
- Complex Systems Research Center, Shanxi University, Taiyuan 030006, People’s Republic of China
- Shanxi Key Laboratory of Mathematical Techniques and Big Data Analysis for Disease Control and Prevention, Taiyuan 030006, People’s Republic of China
| | - Ivan Romić
- School of Artificial Intelligence, Optics, and Electronics (iOPEN), Northwestern Polytechnical University, Xi’an 710072, People’s Republic of China
- Statistics and Mathematics College, Yunnan University of Finance and Economics, Kunming 650221, People’s Republic of China
- Graduate School of Economics, Osaka City University, Osaka 558-8585, Japan
| | - Zhen Wang
- School of Mechanical Engineering, Northwestern Polytechnical University, Xi’an 710072, People’s Republic of China
- School of Artificial Intelligence, Optics, and Electronics (iOPEN), Northwestern Polytechnical University, Xi’an 710072, People’s Republic of China
| | - Marko Jusup
- Tokyo Tech World Hub Research Initiative (WRHI), Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 152-8550, Japan
| | - Petter Holme
- Tokyo Tech World Hub Research Initiative (WRHI), Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 152-8550, Japan
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3
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Torabi R, Davidsen J. Pattern formation in reaction-diffusion systems in the presence of non-Markovian diffusion. Phys Rev E 2019; 100:052217. [PMID: 31869913 DOI: 10.1103/physreve.100.052217] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2019] [Indexed: 12/31/2022]
Abstract
We study reaction-diffusion systems beyond the Markovian approximation to take into account the effect of memory on the formation of spatiotemporal patterns. Using a non-Markovian Brusselator model as a paradigmatic example, we show how to use reductive perturbation to investigate the formation and stability of patterns. Focusing in detail on the Hopf instability and short-term memory, we derive the corresponding complex Ginzburg-Landau equation that governs the amplitude of the critical mode and we establish the explicit dependence of its parameters on the memory properties. Numerical solution of this memory-dependent complex Ginzburg-Landau equation as well as direct numerical simulation of the non-Markovian Brusselator model illustrates that memory changes the properties of the spatiotemporal patterns. Our results indicate that going beyond the Markovian approximation might be necessary to study the formation of spatiotemporal patterns even in systems with short-term memory. At the same time, our work opens up a new window into the control of these patterns using memory.
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Affiliation(s)
- Reza Torabi
- Department of Physics and Astronomy, University of Calgary, Calgary, Alberta T2N 1N4, Canada.,Department of Physics, Tafresh University, 39518-79611 Tafresh, Iran
| | - Jörn Davidsen
- Department of Physics and Astronomy, University of Calgary, Calgary, Alberta T2N 1N4, Canada.,Hotchkiss Brain Institute, University of Calgary, Calgary, Alberta T2N 4N1, Canada
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Wang C, Chang L, Liu H. Spatial Patterns of a Predator-Prey System of Leslie Type with Time Delay. PLoS One 2016; 11:e0150503. [PMID: 26930573 PMCID: PMC4773104 DOI: 10.1371/journal.pone.0150503] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2016] [Accepted: 02/16/2016] [Indexed: 11/19/2022] Open
Abstract
Time delay due to maturation time, capturing time or other reasons widely exists in biological systems. In this paper, a predator-prey system of Leslie type with diffusion and time delay is studied based on mathematical analysis and numerical simulations. Conditions for both delay induced and diffusion induced Turing instability are obtained by using bifurcation theory. Furthermore, a series of numerical simulations are performed to illustrate the spatial patterns, which reveal the information of density changes of both prey and predator populations. The obtained results show that the interaction between diffusion and time delay may give rise to rich dynamics in ecosystems.
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Affiliation(s)
- Caiyun Wang
- Department of Mathematics, Xinzhou Teachers University, Xinzhou 034000, Shan’xi, China
| | - Lili Chang
- Complex Systems Research Center, Shanxi University, Taiyuan, Shanxi 030006, China
| | - Huifeng Liu
- College of Material Science and Engineering, Taiyuan University of Science and Technology, Taiyuan 030024, Shan’xi, China
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Sen S, Ghosh P, Ray DS. Reaction-diffusion systems with stochastic time delay in kinetics. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2010; 81:056207. [PMID: 20866307 DOI: 10.1103/physreve.81.056207] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2010] [Indexed: 05/29/2023]
Abstract
Time delay is an important dynamical issue in a multistep chemical reaction. We present a theoretical scheme for delayed reaction-diffusion systems where the time delay in kinetics is stochastic in nature. It has been shown that a small but finite strength of delay may result in generic change in the nature of spatiotemporal instability in the dynamics. Our theoretical analysis has been corroborated by numerical simulations on two reaction-diffusion systems.
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Affiliation(s)
- Shrabani Sen
- Indian Association for Cultivation of Science, Jadavpur, Kolkata 700 032, India
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6
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Sen S, Ghosh P, Riaz SS, Ray DS. Time-delay-induced instabilities in reaction-diffusion systems. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2009; 80:046212. [PMID: 19905420 DOI: 10.1103/physreve.80.046212] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2009] [Revised: 07/22/2009] [Indexed: 05/28/2023]
Abstract
Time delay in the kinetic terms of reaction-diffusion systems has been investigated. It has been shown that short delay beyond a critical threshold may induce spatiotemporal instabilities. For unequal diffusivities and appropriate parameter space delay may induce Turing instability resulting in stationary patterns and also interesting Turing-Hopf transition with the formation of spirals. The theoretical scheme has been numerically explored in two different prototypical reaction-diffusion systems.
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Affiliation(s)
- Shrabani Sen
- Indian Association for the Cultivation of Science, Jadavpur, Kolkata, India
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Hu HX, Ji L, Li QS. Delay-induced inward and outward spiral waves in oscillatory medium. J Chem Phys 2008; 128:044904. [DOI: 10.1063/1.2821964] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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