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Sokolová M, Šestáková H, Truksa M, Šafařík M, Hadravová R, Bouř P, Šebestík J. Photochemical synthesis of pink silver and its use for monitoring peptide nitration via surface enhanced Raman spectroscopy (SERS). Amino Acids 2022; 54:1261-1274. [PMID: 35731286 DOI: 10.1007/s00726-022-03178-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2022] [Accepted: 05/31/2022] [Indexed: 12/01/2022]
Abstract
Oxidative stress may cause extended tyrosine posttranslational modifications of peptides and proteins. The 3-nitro-L-tyrosine (Nit), which is typically formed, affects protein behavior during neurodegenerative processes, such as Alzheimer's and Parkinson's diseases. Such metabolic products may be conveniently detected at very low concentrations by surface enhanced Raman spectroscopy (SERS). Previously, we have explored the SERS detection of the Nit NO2 bending vibrational bands in a presence of hydrogen chloride (Niederhafner et al., Amino Acids 53:517-532, 2021, ibid). In this article, we describe performance of a new SERS substrate, "pink silver", synthesized photochemically. It provides SERS even without the HCl induction, and the acid further decreases the detection limit about 9 times. Strong SERS bands were observed in the asymmetric (1550-1475 cm-1) and symmetric (1360-1290 cm-1) NO stretching in the NO2 group. The bending vibration was relatively weak, but appeared stronger when HCl was added. The band assignments were supported by density functional theory modeling.
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Affiliation(s)
- Marina Sokolová
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences, Flemingovo náměstí 2, 16610, Prague 6, Czech Republic
| | - Hana Šestáková
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences, Flemingovo náměstí 2, 16610, Prague 6, Czech Republic
| | - Martin Truksa
- Mensa Gymnázium O.P.S., Španielova 1111/19, 163 00, Prague 6, Czech Republic
| | - Martin Šafařík
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences, Flemingovo náměstí 2, 16610, Prague 6, Czech Republic
| | - Romana Hadravová
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences, Flemingovo náměstí 2, 16610, Prague 6, Czech Republic
| | - Petr Bouř
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences, Flemingovo náměstí 2, 16610, Prague 6, Czech Republic
| | - Jaroslav Šebestík
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences, Flemingovo náměstí 2, 16610, Prague 6, Czech Republic. .,Mensa Gymnázium O.P.S., Španielova 1111/19, 163 00, Prague 6, Czech Republic.
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Proniewicz E, Małuch I, Kudelski A, Prahl A. Adsorption of (Phe-h 5)/(Phe-d 5)-substituted peptides from neurotensin family on the nanostructured surfaces of Ag and Cu: SERS studies. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2020; 242:118748. [PMID: 32721658 DOI: 10.1016/j.saa.2020.118748] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2020] [Revised: 07/09/2020] [Accepted: 07/15/2020] [Indexed: 05/25/2023]
Abstract
This work describes an application of Raman (RS) and surface-enhanced Raman scattering (SERS) to characterize the selective adsorption of two peptides belonging to the neurotensin family peptides, such as kinetensin (KN) and xenopsin-related peptide 2 (XP-2) that are known to stimulate the growth of human tumors. To perform a reliable analysis of SERS spectra, the L-Phe residue (at position 8 or 1 in the amino acid sequence of these peptides) was replaced with L-Phe-d5 (five protons of L-phenylalanine ring substituted by deuterium). Native and (Phe-d5)-isotopically labeled peptides were deposited on electrochemically nanostructured surfaces of Ag (AgORC) and Cu (CuORC) from an aqueous solution (H2O). To determine the share of amide bonds in the interaction with the metallic substrate, SERS spectra of peptides adsorbed on AgORC from heavy water (D2O) were measured. Also, to determine the effect of the C-end on the SERS spectrum, measurements were made for the KN analog in which the C-terminal L-leucine was removed ([desLeu9]KN). Based on the analyses of the spectral profiles, in the spectral range of 600-1650 cm-1, specific conclusions have been drawn regarding specific aromatic ring···metal interactions and changes in the interaction during substrate change.
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Affiliation(s)
- E Proniewicz
- Faculty of Foundry Engineering, AGH University of Science and Technology, 30-059 Krakow, Poland.
| | - I Małuch
- Department of Chemistry, University of Gdansk, Wita Stwosza 63, 80-308 Gdansk, Poland
| | - A Kudelski
- Faculty of Chemistry, University of Warsaw, ul. Pasteur 1, 02-093 Warsaw, Poland
| | - A Prahl
- Department of Chemistry, University of Gdansk, Wita Stwosza 63, 80-308 Gdansk, Poland
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Monitoring peptide tyrosine nitration by spectroscopic methods. Amino Acids 2020; 53:517-532. [PMID: 33205301 DOI: 10.1007/s00726-020-02911-7] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2020] [Accepted: 11/04/2020] [Indexed: 12/16/2022]
Abstract
Oxidative stress can lead to various derivatives of the tyrosine residue in peptides and proteins. A typical product is 3-nitro-L-tyrosine residue (Nit), which can affect protein behavior during neurodegenerative processes, such as those associated with Alzheimer's and Parkinson's diseases. Surface enhanced Raman spectroscopy (SERS) is a technique with potential for detecting peptides and their metabolic products at very low concentrations. To explore the applicability to Nit, we use SERS to monitor tyrosine nitration in Met-Enkephalin, rev-Prion protein, and α-synuclein models. Useful nitration indicators were the intensity ratio of two tyrosine marker bands at 825 and 870 cm-1 and a bending vibration of the nitro group. During the SERS measurement, a conversion of nitrotyrosine to azobenzene containing peptides was observed. The interpretation of the spectra has been based on density functional theory (DFT) simulations. The CAM-B3LYP and ωB97XD functionals were found to be most suitable for modeling the measured data. The secondary structure of the α-synuclein models was monitored by electronic and vibrational circular dichroism (ECD and VCD) spectroscopies and modeled by molecular dynamics (MD) simulations. The results suggest that the nitration in these peptides has a limited effect on the secondary structure, but may trigger their aggregation.
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Smith M, Logan M, Bazley M, Blanchfield J, Stokes R, Blanco A, McGee R. A Semi-quantitative method for the detection of fentanyl using surface-enhanced Raman scattering (SERS) with a handheld Raman instrument. J Forensic Sci 2020; 66:505-519. [PMID: 33136303 DOI: 10.1111/1556-4029.14610] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2020] [Revised: 09/06/2020] [Accepted: 10/07/2020] [Indexed: 12/20/2022]
Abstract
A handheld, spatially offset Raman spectroscopy (SORS) system was successfully used to obtain Surface-enhanced Raman Scattering (SERS) spectra of fentanyl under simulated field conditions. A series of aqueous fentanyl solutions were prepared with commercially available gold nanoparticle solution, at concentrations ranging from 0.003 to 1697 μM. These SERS spectra were then used to generate two concentration calibration models (via a plot of peak area (1026 cm-1 ) versus concentration, and quantitative spectral decomposition using partial least squares (PLS1)). For both models, the relationship followed Langmuir adsorption and became non-linear at concentrations above ~0.2 μM, with a limit of detection (LOD) of approximately 3 nM. The same technique was successfully used to measure fentanyl in the presence of two common "cutting agents," heroin and glucose, at 1% and 2% fentanyl proportions (w/w). Fentanyl detection was successfully achieved, but mixture interference from the cutting agents prevented a calibration model being generated. Four fentanyl analogues were also investigated-butyrylfentanyl, furanylfentanyl, acetylfentanyl, and ocfentanyl. A concentration calibration model for each species was successfully generated, but differentiation from fentanyl proved more challenging, although several potential diagnostic peaks were identified. These results identified a pathway forward in using handheld equipment for the reliable detection of ultra-low concentrations of fentanyl and fentanyl analogues via SERS, even when mixed with diluents. However, quantitative detection is negatively impacted in the presence of heroin and glucose. This also provides a starting point for a SERS-based spectral library of fentanyl analogues, in combination with a range of different diluents.
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Affiliation(s)
- Matthew Smith
- Queensland Fire and Emergency Services, Research and Scientific Branch, Brisbane, Australia
| | - Mike Logan
- Queensland Fire and Emergency Services, Research and Scientific Branch, Brisbane, Australia
| | - Mikaela Bazley
- Chemistry Department, University of Queensland, St Lucia, Brisbane, Australia
| | - Joanne Blanchfield
- Chemistry Department, University of Queensland, St Lucia, Brisbane, Australia
| | - Robert Stokes
- Field Detection, Molecular Spectroscopy, Agilent Technologies UK Ltd, Oxford, UK
| | - Ana Blanco
- Field Detection, Molecular Spectroscopy, Agilent Technologies UK Ltd, Oxford, UK
| | - Rachel McGee
- Field Detection, Molecular Spectroscopy, Agilent Technologies UK Ltd, Oxford, UK
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Jurasekova Z, Garcia-Leis A, Sanchez-Cortes S, Tinti A, Torreggiani A. Structural analysis of the neuropeptide substance P by using vibrational spectroscopy. Anal Bioanal Chem 2019; 411:7419-7430. [PMID: 31494687 DOI: 10.1007/s00216-019-02097-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Abstract
Substance P (SP) is one of the most studied peptide hormones and knowing the relationship between its structure and function may have important therapeutic applications in the treatment of a variety of stress-related illnesses. In order to obtain a deeper insight into its folding, the effects of different factors, such as pH changes, the presence of Ca2+ ions, and the substitution of the Met-NH2 moiety in the SP structure, was studied by Raman and infrared spectroscopies. SP has a pH-dependent structure. Under acidic-neutral conditions, SP possesses a prevalent β-sheet structure although also other secondary structure elements are present. By increasing pH, a higher orderliness in the SP secondary structure is induced, as well as the formation of strongly bound intermolecular β-strands with a parallel alignment, which favour the self-assembly of SP in β-aggregates. The substitution of the Met-NH2 moiety with the acidic functional group in the SP sequence, giving rise to a not biologically active SP analogue, results in a more disordered folding, where the predominant contribution comes from a random coil. Conversely, the presence of Ca2+ ions affects slightly but sensitively the folding of the polypeptide chain, by favouring the α-helical content and a different alignment of β-strands; these are structural elements, which may favour the SP biological activity. In addition, the capability of SERS spectroscopy to detect SP in its biologically active form was also tested by using different metal nanoparticles. Thanks to the use of silver NPs prepared by reduction of silver nitrate with hydroxylamine hydrochloride, SP can be detected at very low peptide concentration (~ 90 nM). However, the SERS spectra cannot be obtained under alkaline conditions since both the formation of SP aggregates and the lack of ion pairs do not allow a strong enough interaction of SP with silver NPs. Graphical abstract.
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Affiliation(s)
- Zuzana Jurasekova
- Department of Biophysics, Faculty of Science, P. J. Šafárik University in Košice, Jesenná 5, 040 01, Košice, Slovakia.
- Center for Interdisciplinary Biosciences, Technology and Innovation Park, P. J. Šafárik University in Košice, Jesenná 5, 040 01, Košice, Slovakia.
| | - Adianez Garcia-Leis
- Instituto de Estructura de la Materia, CSIC, Serrano 121, 28006, Madrid, Spain
| | | | - Anna Tinti
- Dipartimento di Scienze Biomediche e Neuromotorie, Università di Bologna, Via Belmeloro 8/2, 40126, Bologna, Italy
| | - Armida Torreggiani
- Istituto per la Sintesi Organica e la Fotoreattività, Consiglio Nazionale delle Ricerche, CNR, Via P. Gobetti No. 101, 40129, Bologna, Italy.
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Ramanauskaite L, Snitka V. Surface enhanced Raman spectroscopy of l-alanyl-l-tryptophan dipeptide adsorbed on Si substrate decorated with triangular silver nanoplates. Chem Phys Lett 2015. [DOI: 10.1016/j.cplett.2015.01.049] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Malek K, Makowski M, Królikowska A, Bukowska J. Comparative studies on IR, Raman, and surface enhanced Raman scattering spectroscopy of dipeptides containing ΔAla and ΔPhe. J Phys Chem B 2012; 116:1414-25. [PMID: 22208201 DOI: 10.1021/jp208586j] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Three dipeptides containing dehydroresidues (ΔAla, Δ((Z))Phe, and Δ((E))Phe) were examined by IR, Raman, and surface-enhanced Raman techniques for the first time. The effect of the size and isomer type of the β-substituent in the dehydroresidue on the conformational structure of the peptide was evaluated by using the analysis of IR and Raman bands. Additionally, SERS spectroscopy provided insight into the adsorption mechanism of these species on the metal surface. SERS spectra were recorded at alkaline pH on the silver sol using visible light excitation. The dehydroresidues studied here strongly influenced the SERS profile of the peptides. The most pronounced SERS signal for all dipeptides was assigned to the symmetric stretching vibration of the carboxylate ions. This indicates that the dehydropeptides studied here primarily adsorb via the deprotonated carboxylic group. Additionally, the enhanced SERS bands in the range 1550-1650 cm(-1) show differences in contribution of the dehydroresidue to the adsorption mechanism of the studied peptides.
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Affiliation(s)
- Kamilla Malek
- Faculty of Chemistry, Jagiellonian Chemistry, Ingardena 3, 30-060 Krakow, Poland.
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Aliaga AE, Aguayo T, Garrido C, Clavijo E, Hevia E, Gómez-Jeria JS, Leyton P, Campos-Vallette MM, Sanchez-Cortes S. Surface-enhanced Raman scattering and theoretical studies of the C-terminal peptide of the β-subunit human chorionic gonadotropin without linked carbohydrates. Biopolymers 2010; 95:135-43. [PMID: 20872871 DOI: 10.1002/bip.21542] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2010] [Revised: 08/10/2010] [Accepted: 09/08/2010] [Indexed: 11/11/2022]
Abstract
Raman and surface-enhanced Raman scattering (SERS) spectra of the synthetic carboxy terminal peptide of human chorionic gonadatropin β-subunit free of carbohydrate moieties(P37) are reported. The spectral analysis is performed on the basis of our reported Raman spectrum and SERS data of oligopeptides displaying selected amino acids sequences MRKDV, ADEDRDA, and LGRGISL. SERS samples of P37 were prepared by coating the solid peptide with metal colloids on a quartz slide. This treatment makes possible to obtain high spectral batch to batch reproducibility. Amino acids components of P37 display net charges and hydrophobic characteristics, which are related to particular structural aspects of the adsorbate-substrate interaction. The spectroscopic results are supported by quantum chemical calculations performed by using extended Hückel theory method for a model of P37 interacting with an Ag surface. The P37-metal interaction is drove by positively charged fragments of selected amino acids,mainly threonine 109, lysine 122, and arginine in positions 114 and 133. Data here reported intend to contribute to the knowledge about the antigen-antibody interaction and to the drugs delivery research area
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Affiliation(s)
- A E Aliaga
- Laboratorio de Espectroscopía Molecular, Facultad de Ciencias, Universidad de Chile, PO Box 653, Santiago, Chile
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Aliaga AE, Garrido C, Leyton P, Diaz G, Gomez-Jeria JS, Aguayo T, Clavijo E, Campos-Vallette MM, Sanchez-Cortes S. SERS and theoretical studies of arginine. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2010; 76:458-463. [PMID: 20471905 DOI: 10.1016/j.saa.2010.01.007] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2009] [Revised: 12/30/2009] [Accepted: 01/27/2010] [Indexed: 05/29/2023]
Abstract
Arginine amino acid (Arg) has been vibrationally studied through its infrared, Raman and surface-enhanced Raman scattering (SERS) spectra, and theoretical calculations. Net charge is used to predict the possibility to obtain the SERS spectrum of Arg in colloidal solution. The interpretation of the SERS spectral data suggests that the Arg-Ag nanoparticles interaction in a colloidal solution and in the case of the Arg coated by Ag is mainly verified through the guanidinium moiety. Theoretical calculations performed by using extended Hückel theory method for a model of Arg interacting with an Ag cluster support the observed SERS experimental result.
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Affiliation(s)
- A E Aliaga
- Laboratorio de Espectroscopia Vibracional, Universidad de Chile, PO Box 653, Las Palmeras 3425, Santiago, Chile
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Xiaojuan Y, Huaimin G, Jiwei W. Surface-enhanced Raman spectrum of Gly-Gly adsorbed on the silver colloidal surface. J Mol Struct 2010. [DOI: 10.1016/j.molstruc.2010.05.009] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Wigginton NS, de Titta A, Piccapietra F, Dobias J, Nesatyy VJ, Suter MJF, Bernier-Latmani R. Binding of silver nanoparticles to bacterial proteins depends on surface modifications and inhibits enzymatic activity. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2010; 44:2163-8. [PMID: 20158230 DOI: 10.1021/es903187s] [Citation(s) in RCA: 152] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Here we describe results from a proteomic study of protein-nanoparticle interactions to further the understanding of the ecotoxicological impact of silver nanoparticles (AgNPs) in the environment. We identified a number of proteins from Escherichia coli that bind specifically to bare or carbonate-coated AgNPs. Of these proteins, tryptophanase (TNase) was observed to have an especially high affinity for both surface modifications despite its low abundance in E. coli. Purified TNase loses enzymatic activity upon associating with AgNPs, suggesting that the active site may be in the vicinity of the binding site(s). TNase fragments with high affinities for both types of AgNPs were identified using matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) mass spectrometry. Differences in peptide abundance/presence in mass spectra for the two types of AgNPs suggest preferential binding of some protein fragments based on surface coating. One high-binding protein fragment contained a residue (Arg103) that is part of the active site. Ag adducts were identified for some fragments and found to be characteristic of strong binding to AgNPs rather than association of the fragments with ionic silver. These results suggest a probable mechanism for adhesion of proteins to the most commonly used commercial nanoparticles and highlight the potential effect of nanoparticle surface coating on bioavailability.
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Affiliation(s)
- Nicholas S Wigginton
- Environmental Microbiology Laboratory, Ecole Polytechnique Federale de Lausanne, CH-1015 Lausanne, Switzerland
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