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For: Touma T, Kobayashi M, Nakai H. Time-dependent Hartree–Fock frequency-dependent polarizability calculation applied to divide-and-conquer electronic structure method. Chem Phys Lett 2010;485:247-52. [DOI: 10.1016/j.cplett.2009.12.043] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Number Cited by Other Article(s)
1
Nishimura R, Yoshikawa T, Sakata K, Nakai H. Excitation configuration analysis for divide-and-conquer excited-state calculation method using dynamical polarizability. J Chem Phys 2024;160:244103. [PMID: 38913842 DOI: 10.1063/5.0207935] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2024] [Accepted: 05/23/2024] [Indexed: 06/26/2024]  Open
2
Nakai H, Kobayashi M, Yoshikawa T, Seino J, Ikabata Y, Nishimura Y. Divide-and-Conquer Linear-Scaling Quantum Chemical Computations. J Phys Chem A 2023;127:589-618. [PMID: 36630608 DOI: 10.1021/acs.jpca.2c06965] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
3
Yoshikawa T, Takanashi T, Nakai H. Quantum Algorithm of the Divide-and-Conquer Unitary Coupled Cluster Method with a Variational Quantum Eigensolver. J Chem Theory Comput 2022;18:5360-5373. [PMID: 35926142 DOI: 10.1021/acs.jctc.2c00602] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
4
Nakai H. Development of Linear-Scaling Relativistic Quantum Chemistry Covering the Periodic Table. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2021. [DOI: 10.1246/bcsj.20210091] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
5
Yoshikawa T, Yoshihara J, Nakai H. Large-scale excited-state calculation using dynamical polarizability evaluated by divide-and-conquer based coupled cluster linear response method. J Chem Phys 2020;152:024102. [PMID: 31941302 DOI: 10.1063/1.5124909] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
6
Yoshikawa T, Komoto N, Nishimura Y, Nakai H. GPU-Accelerated Large-Scale Excited-State Simulation Based on Divide-and-Conquer Time-Dependent Density-Functional Tight-Binding. J Comput Chem 2019;40:2778-2786. [PMID: 31441083 DOI: 10.1002/jcc.26053] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2019] [Revised: 08/04/2019] [Accepted: 08/07/2019] [Indexed: 01/09/2023]
7
Nakai H, Yoshikawa T. Development of an excited-state calculation method for large systems using dynamical polarizability: A divide-and-conquer approach at the time-dependent density functional level. J Chem Phys 2017;146:124123. [DOI: 10.1063/1.4978952] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]  Open
8
Nakai H, Yoshikawa T, Nonaka Y. Efficient pole-search algorithm for dynamic polarizability: Toward alternative excited-state calculation for large systems. J Comput Chem 2017;38:7-14. [PMID: 27706818 DOI: 10.1002/jcc.24507] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2016] [Revised: 09/17/2016] [Accepted: 09/19/2016] [Indexed: 11/10/2022]
9
Furche F, Krull BT, Nguyen BD, Kwon J. Accelerating molecular property calculations with nonorthonormal Krylov space methods. J Chem Phys 2016;144:174105. [DOI: 10.1063/1.4947245] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]  Open
10
Wang LW. Divide-and-conquer quantum mechanical material simulations with exascale supercomputers. Natl Sci Rev 2014. [DOI: 10.1093/nsr/nwu060] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]  Open
11
Nakata H, Schmidt MW, Fedorov DG, Kitaura K, Nakamura S, Gordon MS. Efficient Molecular Dynamics Simulations of Multiple Radical Center Systems Based on the Fragment Molecular Orbital Method. J Phys Chem A 2014;118:9762-71. [DOI: 10.1021/jp507726m] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
12
Nakata H, Fedorov DG, Yokojima S, Kitaura K, Sakurai M, Nakamura S. Unrestricted density functional theory based on the fragment molecular orbital method for the ground and excited state calculations of large systems. J Chem Phys 2014;140:144101. [DOI: 10.1063/1.4870261] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]  Open
13
Yoshikawa T, Kobayashi M, Fujii A, Nakai H. Novel Approach to Excited-State Calculations of Large Molecules Based on Divide-and-Conquer Method: Application to Photoactive Yellow Protein. J Phys Chem B 2013;117:5565-73. [DOI: 10.1021/jp401819d] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
14
Kobayashi M, Nakai H. An effective energy gradient expression for divide-and-conquer second-order Møller–Plesset perturbation theory. J Chem Phys 2013;138:044102. [DOI: 10.1063/1.4776228] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
15
Kobayashi M, Touma T, Nakai H. Dynamic hyperpolarizability calculations of large systems: The linear-scaling divide-and-conquer approach. J Chem Phys 2012;136:084108. [DOI: 10.1063/1.3687341] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]  Open
16
NAKAI H. Discovery of Chemical Principles:Symmetry Rules for Degenerate Excitations. JOURNAL OF COMPUTER CHEMISTRY-JAPAN 2012. [DOI: 10.2477/jccj.2012-0004] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
17
Yam C, Zhang Q, Wang F, Chen G. Linear-scaling quantum mechanical methods for excited states. Chem Soc Rev 2012;41:3821-38. [DOI: 10.1039/c2cs15259b] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
18
Kobayashi M, Nakai H. How does it become possible to treat delocalized and/or open-shell systems in fragmentation-based linear-scaling electronic structure calculations? The case of the divide-and-conquer method. Phys Chem Chem Phys 2012;14:7629-39. [DOI: 10.1039/c2cp40153c] [Citation(s) in RCA: 66] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
19
Gordon MS, Fedorov DG, Pruitt SR, Slipchenko LV. Fragmentation Methods: A Route to Accurate Calculations on Large Systems. Chem Rev 2011;112:632-72. [DOI: 10.1021/cr200093j] [Citation(s) in RCA: 836] [Impact Index Per Article: 64.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
20
Yoshikawa T, Kobayashi M, Nakai H. Linear-scaling divide-and-conquer second-order Møller–Plesset perturbation calculation for open-shell systems: implementation and application. Theor Chem Acc 2011. [DOI: 10.1007/s00214-011-1008-7] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
21
Katouda M, Kobayashi M, Nakai H, Nagase S. Two‐level hierarchical parallelization of second‐order Møller–plesset perturbation calculations in divide‐and‐conquer method. J Comput Chem 2011;32:2756-64. [DOI: 10.1002/jcc.21855] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2011] [Revised: 03/30/2011] [Accepted: 05/13/2011] [Indexed: 11/11/2022]
22
Touma T, Kobayashi M, Nakai H. Finite-field evaluation of static (hyper)polarizabilities based on the linear-scaling divide-and-conquer method. Theor Chem Acc 2011. [DOI: 10.1007/s00214-011-0964-2] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
23
Pathak AK. Theoretical study on microhydration of ion: Structure and polarizability. Chem Phys 2011. [DOI: 10.1016/j.chemphys.2011.05.010] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
24
Brorsen K, Fedorov DG. Fully analytic energy gradient in the fragment molecular orbital method. J Chem Phys 2011;134:124115. [DOI: 10.1063/1.3568010] [Citation(s) in RCA: 88] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
25
Fedorov DG. A combined effective fragment potential–fragment molecular orbital method. II. Analytic gradient and application to the geometry optimization of solvated tetraglycine and chignolin. J Chem Phys 2011;134:034110. [DOI: 10.1063/1.3517110] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
26
Kobayashi M, Kunisada T, Akama T, Sakura D, Nakai H. Reconsidering an analytical gradient expression within a divide-and-conquer self-consistent field approach: Exact formula and its approximate treatment. J Chem Phys 2011;134:034105. [DOI: 10.1063/1.3524337] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
27
Linear-scaling electronic structure calculation program based on divide-and-conquer method. ACTA ACUST UNITED AC 2011. [DOI: 10.1016/j.procs.2011.04.122] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
28
Divide-and-Conquer Approaches to Quantum Chemistry: Theory and Implementation. CHALLENGES AND ADVANCES IN COMPUTATIONAL CHEMISTRY AND PHYSICS 2011. [DOI: 10.1007/978-90-481-2853-2_5] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
29
Sawada T, Fedorov DG, Kitaura K. Binding of Influenza A Virus Hemagglutinin to the Sialoside Receptor Is Not Controlled by the Homotropic Allosteric Effect. J Phys Chem B 2010;114:15700-5. [DOI: 10.1021/jp1068895] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
30
Kobayashi M, Yoshikawa T, Nakai H. Divide-and-conquer self-consistent field calculation for open-shell systems: Implementation and application. Chem Phys Lett 2010. [DOI: 10.1016/j.cplett.2010.10.005] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
31
Nagata T, Fedorov DG, Kitaura K. Importance of the hybrid orbital operator derivative term for the energy gradient in the fragment molecular orbital method. Chem Phys Lett 2010. [DOI: 10.1016/j.cplett.2010.04.043] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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