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Molina F, Dezalay J, Tabata JI, Soorkia S, Broquier M, Hirata K, Ishiuchi SI, Fujii M, Grégoire G. Conformer-selective Photodynamics of TrpH + -H 2 O. Chemphyschem 2023; 24:e202200561. [PMID: 36177693 PMCID: PMC10092157 DOI: 10.1002/cphc.202200561] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2022] [Revised: 09/06/2022] [Indexed: 01/20/2023]
Abstract
The photodynamics of protonated tryptophan and its mono hydrated complex TrpH+ -H2 O has been revisited. A combination of steady-state IR and UV cryogenic ion spectroscopies with picosecond pump-probe photodissociation experiments sheds new lights on the deactivation processes of TrpH+ and conformer-selected TrpH+ -H2 O complex, supported by quantum chemistry calculations at the DFT and coupled-cluster levels for the ground and excited states, respectively. TrpH+ excited at the band origin exhibits a transient of less than 100 ps, assigned to the lifetime of the excited state proton transfer (ESPT) structure. The two experimentally observed conformers of TrpH+ -H2 O have been assigned. A striking result arises from the conformer-selective photodynamics of TrpH+ -H2 O, in which a single water molecule inserted in between the ammonium and the indole ring hinders the barrierless ESPT reaction responsible for the ultra-fast deactivation process observed in the other conformer and in bare TrpH+ .
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Affiliation(s)
- Franco Molina
- Université Paris-Saclay, CNRS, Institut des Sciences Moléculaires d'Orsay, 91405, Orsay, France.,INFIQC (CONICET-UNC). Departamento de Fisicoquímica, Fac. de Ciencias Químicas. Centro Láser de Ciencias Moleculares., Universidad Nacional de Córdoba, Ciudad Universitaria Pabellón Argentina, X5000HUA, Córdoba, Argentina
| | - Jordan Dezalay
- Université Paris-Saclay, CNRS, Institut des Sciences Moléculaires d'Orsay, 91405, Orsay, France
| | - Jun-Ichi Tabata
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, 4259 Nagatsu-ta-cho, Midori-ku, Yokohama, 226-8503, Japan.,School of Life Science and Technology, Tokyo Institute of Technology, 4259 Nagatsu-ta-cho, Midori-ku, Yokohama, 226-8503, Japan
| | - Satchin Soorkia
- Université Paris-Saclay, CNRS, Institut des Sciences Moléculaires d'Orsay, 91405, Orsay, France
| | - Michel Broquier
- Université Paris-Saclay, CNRS, Institut des Sciences Moléculaires d'Orsay, 91405, Orsay, France
| | - Keisuke Hirata
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, 4259 Nagatsu-ta-cho, Midori-ku, Yokohama, 226-8503, Japan.,Department of Chemistry, School of Science, Tokyo Institute of Technology, 2-12-1 4259 Ookayama, Meguro-ku, Tokyo, 152-8550, Japan.,Tokyo Tech World Research Hub Initiative (WRHI), Institute of Innovation Research, Tokyo Institute of Technology, 4259, Nagatsuta-cho, Midori-ku, Yokohama, 226-8503, Japan
| | - Shun-Ichi Ishiuchi
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, 4259 Nagatsu-ta-cho, Midori-ku, Yokohama, 226-8503, Japan.,Department of Chemistry, School of Science, Tokyo Institute of Technology, 2-12-1 4259 Ookayama, Meguro-ku, Tokyo, 152-8550, Japan.,Tokyo Tech World Research Hub Initiative (WRHI), Institute of Innovation Research, Tokyo Institute of Technology, 4259, Nagatsuta-cho, Midori-ku, Yokohama, 226-8503, Japan
| | - Masaaki Fujii
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, 4259 Nagatsu-ta-cho, Midori-ku, Yokohama, 226-8503, Japan.,Tokyo Tech World Research Hub Initiative (WRHI), Institute of Innovation Research, Tokyo Institute of Technology, 4259, Nagatsuta-cho, Midori-ku, Yokohama, 226-8503, Japan.,School of Life Science and Technology, Tokyo Institute of Technology, 4259 Nagatsu-ta-cho, Midori-ku, Yokohama, 226-8503, Japan
| | - Gilles Grégoire
- Université Paris-Saclay, CNRS, Institut des Sciences Moléculaires d'Orsay, 91405, Orsay, France.,Tokyo Tech World Research Hub Initiative (WRHI), Institute of Innovation Research, Tokyo Institute of Technology, 4259, Nagatsuta-cho, Midori-ku, Yokohama, 226-8503, Japan
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Kim J, Woo KC, Kim KK, Kim SK. πσ*-Mediated Nonadiabatic Tunneling Dynamics of Thiophenols in S 1: The Semiclassical Approaches. J Phys Chem A 2022; 126:9594-9604. [PMID: 36534791 DOI: 10.1021/acs.jpca.2c05861] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
The S-H bond tunneling predissociation dynamics of thiophenol and its ortho-substituted derivatives (2-fluorothiophenol, 2-methoxythiophenol, and 2-chlorothiphenol) in S1 (ππ*) where the H atom tunneling is mediated by the nearby S2 (πσ*) state (which is repulsive along the S-H bond extension coordinate) have been investigated in a state-specific way using the picosecond time-resolved pump-probe spectroscopy for the jet-cooled molecules. The effects of the specific vibrational mode excitations and the SH/SD substitutions on the S-H(D) bond rupture tunneling dynamics have been interrogated, giving deep insights into the multidimensional aspects of the S1/S2 conical intersection, which also shapes the underlying adiabatic tunneling potential energy surfaces (PESs). The semiclassical tunneling rate calculations based on the Wentzel-Kramers-Brillouin (WKB) approximation or Zhu-Nakamura (ZN) theory have been carried out based on the ab initio PESs calculated in the (one, two, or three) reduced dimensions to be compared with the experiment. Though the quantitative experimental results could not be reproduced satisfactorily by the present calculations, the qualitative trends among different molecules in terms of the behavior of the tunneling rate versus the (adiabatic) barrier height or the number of PES dimensions could be rationalized. Most interestingly, the H/D kinetic isotope effect observed in the tunneling rate could be much better explained by the ZN theory compared to the WKB approximation, indicating that the nonadiabatic coupling matrix elements should be invoked for understanding the tunneling dynamics taking place in the proximity of the conical intersection.
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Affiliation(s)
- Junggil Kim
- Department of Chemistry, KAIST, Daejeon34141, Republic of Korea
| | - Kyung Chul Woo
- Department of Chemistry, KAIST, Daejeon34141, Republic of Korea
| | - Kuk Ki Kim
- Department of Chemistry, KAIST, Daejeon34141, Republic of Korea
| | - Sang Kyu Kim
- Department of Chemistry, KAIST, Daejeon34141, Republic of Korea
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An EOM-CCSD-based neural network diabatic potential energy matrix for the 1πσ*-mediated photodissociation of thiophenol. CHINESE J CHEM PHYS 2022. [DOI: 10.1063/1674-0068/cjcp2201016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
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4
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Kim J, Woo KC, Kim KK, Kang M, Kim SK. Tunneling dynamics dictated by the multidimensional conical intersection seam in the πσ*‐mediated photochemistry of heteroaromatic molecules. B KOREAN CHEM SOC 2021. [DOI: 10.1002/bkcs.12453] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Junggil Kim
- Department of Chemistry, KAIST Daejeon Republic of Korea
| | - Kyung Chul Woo
- Department of Chemistry, KAIST Daejeon Republic of Korea
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences Nanyang Technological University Singapore Singapore
| | - Kuk Ki Kim
- Department of Chemistry, KAIST Daejeon Republic of Korea
| | - Minseok Kang
- Department of Chemistry, KAIST Daejeon Republic of Korea
| | - Sang Kyu Kim
- Department of Chemistry, KAIST Daejeon Republic of Korea
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Woo KC, Kim SK. Real-Time Tunneling Dynamics through Adiabatic Potential Energy Surfaces Shaped by a Conical Intersection. J Phys Chem Lett 2020; 11:6730-6736. [PMID: 32787219 DOI: 10.1021/acs.jpclett.0c01892] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Dynamic shaping of the adiabatic tunneling barrier in the S-H bond extension coordinate of several ortho-substituted thiophenols has been found to be mediated by low-frequency out-of-plane vibrational modes, which are parallel to the coupling vector of the branching plane comprising the conical intersection. The S-H predissociation tunneling rate (k) measured when exciting to the S1 zero-point level of 2-methoxythiophenol (44 ps)-1 increases abruptly, to k ≈ (22 ps)-1, at the energy corresponding to excitation of the 152 cm-1 out-of-plane vibrational mode and then falls back to k ≈ (40 ps)-1 when the in-plane mode is excited at 282 cm-1. Similar resonance-like peaks in plots of S1 tunneling rate versus internal energy are observed when exciting the corresponding low-frequency out-of-plane modes in the S1 states of 2-fluorothiophenol and 2-chlorothiophenol. This experiment provides clear-cut evidence for dynamical "shaping" of the lower-lying adiabatic potential energy surfaces by the higher-lying conical intersection seam, which dictates the multidimensional tunneling dynamics.
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Affiliation(s)
- Kyung Chul Woo
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
| | - Sang Kyu Kim
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
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Lim JS, You HS, Kim SY, Kim J, Park YC, Kim SK. Vibronic structure and predissociation dynamics of 2-methoxythiophenol (S 1): The effect of intramolecular hydrogen bonding on nonadiabatic dynamics. J Chem Phys 2019; 151:244305. [PMID: 31893886 DOI: 10.1063/1.5134519] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023] Open
Abstract
Vibronic spectroscopy and the S-H bond predissociation dynamics of 2-methoxythiophenol (2-MTP) in the S1 (ππ*) state have been investigated for the first time. Resonant two-photon ionization and slow-electron velocity map imaging (SEVI) spectroscopies have revealed that the S1-S0 transition of 2-MTP is accompanied with the planar to the pseudoplanar structural change along the out-of-plane ring distortion and the tilt of the methoxy moiety. The S1 vibronic bands up to their internal energy of ∼1000 cm-1 are assigned from the SEVI spectra taken via various S1 vibronic intermediate states with the aid of ab initio calculations. Intriguingly, Fermi resonances have been identified for some vibronic bands. The S-H bond breakage of 2-MTP occurs via tunneling through an adiabatic barrier under the S1/S2 conical intersection seam, and it is followed by the bifurcation into either the adiabatic or nonadiabatic channel at the S0/S2 conical intersection where the diabatic S2 state (πσ*) is unbound with respect to the S-H bond elongation coordinate, giving the excited (Ã) or ground (X̃) state of the 2-methoxythiophenoxy radical, respectively. Surprisingly, the nonadiabatic transition probability at the S0/S2 conical intersection, estimated from the velocity map ion images of the nascent D fragment from 2-MTP-d1 (2-CH3O-C6H4SD) at the S1 zero-point energy level, is found to be exceptionally high to give the X̃/Ã product branching ratio of 2.03 ± 0.20, which is much higher than the value of ∼0.8 estimated for the bare thiophenol at the S1 origin. It even increases to 2.33 ± 0.17 at the ν45 2 mode (101 cm-1) before it rapidly decays to 0.69 ± 0.05 at the S1 internal energy of about 2200 cm-1. This suggests that the strong intramolecular hydrogen bonding of S⋯D⋯OCH3 in 2-MTP at least in the low S1 internal energy region should play a significant role in localizing the reactive flux onto the conical intersection seam. The minimum energy pathway calculations (second-order coupled-cluster resolution of the identity or time-dependent-density functional theory) of the adiabatic S1 state suggest that the intimate dynamic interplay between the S-H bond cleavage and intramolecular hydrogen bonding could be crucial in the nonadiabatic surface hopping dynamics taking place at the conical intersection.
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Affiliation(s)
- Jean Sun Lim
- Department of Chemistry, KAIST, Daejeon 34141, South Korea
| | - Hyun Sik You
- Department of Chemistry, KAIST, Daejeon 34141, South Korea
| | - So-Yeon Kim
- Department of Chemistry, KAIST, Daejeon 34141, South Korea
| | - Junggil Kim
- Department of Chemistry, KAIST, Daejeon 34141, South Korea
| | | | - Sang Kyu Kim
- Department of Chemistry, KAIST, Daejeon 34141, South Korea
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Zhang L, Truhlar DG, Sun S. Full-dimensional three-state potential energy surfaces and state couplings for photodissociation of thiophenol. J Chem Phys 2019; 151:154306. [DOI: 10.1063/1.5124870] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
Affiliation(s)
- Linyao Zhang
- School of Energy Science and Engineering, Harbin Institute of Technology, Harbin 150001, People’s Republic of China
- Department of Chemistry, Chemical Theory Center, and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455, USA
| | - Donald G. Truhlar
- Department of Chemistry, Chemical Theory Center, and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455, USA
| | - Shaozeng Sun
- School of Energy Science and Engineering, Harbin Institute of Technology, Harbin 150001, People’s Republic of China
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Lim JS, You HS, Han S, Kim SK. Photodissociation Dynamics of Ortho-Substituted Thiophenols at 243 nm. J Phys Chem A 2019; 123:2634-2639. [DOI: 10.1021/acs.jpca.9b00803] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Jean Sun Lim
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
| | - Hyun Sik You
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
| | - Songhee Han
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
| | - Sang Kyu Kim
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
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Lim JS, You HS, Kim SY, Kim SK. Experimental observation of nonadiabatic bifurcation dynamics at resonances in the continuum. Chem Sci 2019; 10:2404-2412. [PMID: 30881669 PMCID: PMC6385646 DOI: 10.1039/c8sc04859b] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2018] [Accepted: 01/04/2019] [Indexed: 11/23/2022] Open
Abstract
The surface crossing of bound and unbound electronic states in multidimensional space often gives rise to resonances in the continuum. This situation happens in the πσ*-mediated photodissociation reaction of 2-fluorothioanisole; optically-bright bound S1 (ππ*) vibrational states of 2-fluorothioanisole are strongly coupled to the optically-dark S2 (πσ*) state, which is repulsive along the S-CH3 elongation coordinate. It is revealed here that the reactive flux prepared at such resonances in the continuum bifurcates into two distinct reaction pathways with totally different dynamics in terms of energy disposal and nonadiabatic transition probability. This indicates that the reactive flux in the Franck-Condon region may either undergo nonadiabatic transition funneling through the conical intersection from the upper adiabat, or follow a low-lying adiabatic path, along which multiple dynamic saddle points may be located. Since 2-fluorothioanisole adopts a nonplanar geometry in the S1 minimum energy, the quasi-degenerate S1/S2 crossing seam in the nonplanar geometry, which lies well below the planar S1/S2 conical intersection, is likely responsible for the efficient vibronic coupling, especially in the low S1 internal energy region. As the excitation energy increases, bound-to-continuum coupling is facilitated with the aid of intramolecular vibrational redistribution, along many degrees of freedom spanning the large structural volume. This leads to the rapid domination of the continuum character of the reactive flux. This work reports direct and robust experimental observations of the nonadiabatic bifurcation dynamics of the reactive flux occurring at resonances in the continuum of polyatomic molecules.
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Affiliation(s)
- Jean Sun Lim
- Department of Chemistry , KAIST , Daejeon 34141 , Republic of Korea .
| | - Hyun Sik You
- Department of Chemistry , KAIST , Daejeon 34141 , Republic of Korea .
| | - So-Yeon Kim
- Department of Chemistry , KAIST , Daejeon 34141 , Republic of Korea .
| | - Sang Kyu Kim
- Department of Chemistry , KAIST , Daejeon 34141 , Republic of Korea .
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Miyazaki M, Washio N, Fujii M. Electron-proton transfer mechanism of excited-state hydrogen transfer in phenol−(NH3) (n = 5) studied by delayed ionization detected femtosecond time-resolved NIR spectroscopy. Chem Phys 2018. [DOI: 10.1016/j.chemphys.2018.08.004] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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11
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Lin GSM, Xie C, Xie D. Nonadiabatic Effect in Photodissociation Dynamics of Thiophenol via the 1ππ* State. J Phys Chem A 2018; 122:5375-5382. [DOI: 10.1021/acs.jpca.8b03460] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Guang-Shuang-Mu Lin
- Institute of Theoretical and Computational Chemistry, Key Laboratory of Mesoscopic Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210093, China
| | - Changjian Xie
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, United States
| | - Daiqian Xie
- Institute of Theoretical and Computational Chemistry, Key Laboratory of Mesoscopic Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210093, China
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12
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Zhang L, Truhlar DG, Sun S. Electronic spectrum and characterization of diabatic potential energy surfaces for thiophenol. Phys Chem Chem Phys 2018; 20:28144-28154. [DOI: 10.1039/c8cp05215h] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We present an accurate simulation of the UV spectrum and a diabatization of three singlet potential surfaces along four coordinates.
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Affiliation(s)
- Linyao Zhang
- School of Energy Science and Engineering
- Harbin Institute of Technology
- Harbin 150001
- P. R. China
- Department of Chemistry
| | - Donald G. Truhlar
- Department of Chemistry
- Chemical Theory Center, and Supercomputing Institute
- University of Minnesota
- Minneapolis
- USA
| | - Shaozeng Sun
- School of Energy Science and Engineering
- Harbin Institute of Technology
- Harbin 150001
- P. R. China
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13
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Lin GSM, Xie C, Xie D. Three-Dimensional Diabatic Potential Energy Surfaces for the Photodissociation of Thiophenol. J Phys Chem A 2017; 121:8432-8439. [DOI: 10.1021/acs.jpca.7b09070] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Guang-Shuang-Mu Lin
- Institute
of Theoretical and Computational Chemistry, Key Laboratory of Mesoscopic
Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210093, China
| | - Changjian Xie
- Department
of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, United States
| | - Daiqian Xie
- Institute
of Theoretical and Computational Chemistry, Key Laboratory of Mesoscopic
Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210093, China
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