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Cigrang LLE, Worth GA. Modeling Photodissociation: Quantum Dynamics Simulations of Methanol. J Phys Chem A 2024; 128:7546-7557. [PMID: 39194169 PMCID: PMC11403662 DOI: 10.1021/acs.jpca.4c03612] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/29/2024]
Abstract
A comprehensive computational study of the gas-phase photodissociation dynamics of methanol is presented. Using a multiconfigurational active space based method (RASSCF) to obtain multidimensional potential energy surfaces (PESs) on-the-fly, direct quantum dynamics simulations were run using the variational multi-configurational Gaussian method (DD-vMCG). Different initial excitation energies were simulated to investigate the dependence of the branching ratios on the electronic state being populated. A detailed mechanistic explanation is provided for the observed differences with respect to the excitation energy. Population of the lowest lying excited state of methanol leads to rapid hydroxyl hydrogen loss as the main dissociation channel. This is rationalized by the strongly dissociative nature of the PES cut along the O-H stretching coordinate, confirmed by the broad feature in the absorption spectrum. In contrast, more energetic excitations lead mainly to C-O bond breaking. Again, analysis of the diabatic surfaces offers a clear explanation in terms of the nature of the electronic states involved and the coupling between them. The type of calculations presented, as well as the subsequent analysis of the results, should be seen as a general workflow for the modeling of photochemical reactions.
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Affiliation(s)
- Léon L E Cigrang
- Department of Chemistry, University College London, London WC1H 0AJ, United Kingdom
| | - Graham A Worth
- Department of Chemistry, University College London, London WC1H 0AJ, United Kingdom
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2
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Bourne-Worster S, Worth GA. Quantum dynamics of excited state proton transfer in green fluorescent protein. J Chem Phys 2024; 160:065102. [PMID: 38353309 DOI: 10.1063/5.0188834] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2023] [Accepted: 01/18/2024] [Indexed: 02/16/2024] Open
Abstract
Photoexcitation of green fluorescent protein (GFP) triggers long-range proton transfer along a "wire" of neighboring protein residues, which, in turn, activates its characteristic green fluorescence. The GFP proton wire is one of the simplest, most well-characterized models of biological proton transfer but remains challenging to simulate due to the sensitivity of its energetics to the surrounding protein conformation and the possibility of non-classical behavior associated with the movement of lightweight protons. Using a direct dynamics variational multiconfigurational Gaussian wavepacket method to provide a fully quantum description of both electrons and nuclei, we explore the mechanism of excited state proton transfer in a high-dimensional model of the GFP chromophore cluster over the first two picoseconds following excitation. During our simulation, we observe the sequential starts of two of the three proton transfers along the wire, confirming the predictions of previous studies that the overall process starts from the end of the wire furthest from the fluorescent chromophore and proceeds in a concerted but asynchronous manner. Furthermore, by comparing the full quantum dynamics to a set of classical trajectories, we provide unambiguous evidence that tunneling plays a critical role in facilitating the leading proton transfer.
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Affiliation(s)
| | - Graham A Worth
- Department of Chemistry, University College London, London WC1H 0AJ, United Kingdom
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3
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Pandey RK, Srikanth K, Tripathi SS, Rajagopala Rao T. Resolving the Experimental Photoelectron Spectra of CAl 3Si . J Phys Chem A 2024; 128:355-369. [PMID: 38189257 DOI: 10.1021/acs.jpca.3c06295] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2024]
Abstract
The experimental photoelectron spectra concerning the six electronic states of CAl3Si- are resolved through electronic structure calculations and quantum nuclear dynamics in this study. It incorporates a model diabatic Hamiltonian to evaluate the coupling parameters and fit the potential energy curves (PECs). The analysis of these PECs showed us that there are sufficient nonadiabatic effects in the photoelectron spectra through the presence of various conical intersections. Poisson intensity distributions (PIDs) and the wave packet density plots are utilized for assigning the fundamental and first overtone excitations. The nuclear dynamics study is accomplished by employing time-dependent (TD) and time-independent (TI) quantum chemistry methods. Ultimately, our theoretical results concurred well with the experimental findings exhibiting vibronic coupling amidst the nearly positioned electronic states.
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Affiliation(s)
- Rishabh Kumar Pandey
- Department of Chemistry, Indian Institute of Technology Patna, Bihta 801106, India
| | - Korutla Srikanth
- Centre of New Technologies, University of Warsaw, 02-097 Warsaw, Poland
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4
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Maskri R, Joubert-Doriol L. The moving crude adiabatic alternative to the adiabatic representation in excited state dynamics. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2022; 380:20200379. [PMID: 35341311 DOI: 10.1098/rsta.2020.0379] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2021] [Accepted: 12/09/2021] [Indexed: 06/14/2023]
Abstract
The choice of the electronic representation in on-the-fly quantum dynamics is crucial. The adiabatic representation is appealing since adiabatic states are readily available from quantum chemistry packages. The nuclear wavepackets are then expanded in a basis of Gaussian functions, which follow trajectories to explore the potential energy surfaces and approximate the potential using a local expansion of the adiabatic quantities. Nevertheless, the adiabatic representation is plagued with severe limitations when conical intersections are involved: the diagonal Born-Oppenheimer corrections (DBOCs) are non-integrable, and the geometric phase effect on the nuclear wavepackets cannot be accounted for unless a model is available. To circumvent these difficulties, the moving crude adiabatic (MCA) representation was proposed and successfully tested in low energy dynamics where the wavepacket skirts the conical intersection. We assess the MCA representation in the case of non-adiabatic transitions through conical intersections. First, we show that using a Gaussian basis in the adiabatic representation indeed exhibits the aforementioned difficulties with a special emphasis on the possibility to regularize the DBOC terms. Then, we show that MCA is indeed able to properly model non-adiabatic transitions. Tests are done on linear vibronic coupling models for the bis(methylene) adamantyl cation and the butatriene cation. This article is part of the theme issue 'Chemistry without the Born-Oppenheimer approximation'.
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Affiliation(s)
- Rosa Maskri
- Univ Gustave Eiffel, Univ Paris Est Creteil, CNRS, UMR 8208, MSME, F-77454 Marne-la-Vallée, France
| | - Loïc Joubert-Doriol
- Univ Gustave Eiffel, Univ Paris Est Creteil, CNRS, UMR 8208, MSME, F-77454 Marne-la-Vallée, France
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5
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Richings GW, Habershon S. Predicting Molecular Photochemistry Using Machine-Learning-Enhanced Quantum Dynamics Simulations. Acc Chem Res 2022; 55:209-220. [PMID: 34982533 DOI: 10.1021/acs.accounts.1c00665] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The processes which occur after molecules absorb light underpin an enormous range of fundamental technologies and applications, including photocatalysis to enable new chemical transformations, sunscreens to protect against the harmful effects of UV overexposure, efficient photovoltaics for energy generation from sunlight, and fluorescent probes to image the intricate details of complex biomolecular structures. Reflecting this broad range of applications, an enormously versatile set of experiments are now regularly used to interrogate light-driven chemical dynamics, ranging from the typical ultrafast transient absorption spectroscopy used in many university laboratories to the inspiring central facilities around the world, such as the next-generation of X-ray free-electron lasers.Computer simulations of light-driven molecular and material dynamics are an essential route to analyzing the enormous amount of transient electronic and structural data produced by these experimental sources. However, to date, the direct simulation of molecular photochemistry remains a frontier challenge in computational chemical science, simultaneously demanding the accurate treatment of molecular electronic structure, nuclear dynamics, and the impact of nonadiabatic couplings.To address these important challenges and to enable new computational methods which can be integrated with state-of-the-art experimental capabilities, the past few years have seen a burst of activity in the development of "direct" quantum dynamics methods, merging the machine learning of potential energy surfaces (PESs) and nonadiabatic couplings with accurate quantum propagation schemes such as the multiconfiguration time-dependent Hartree (MCTDH) method. The result of this approach is a new generation of direct quantum dynamics tools in which PESs are generated in tandem with wave function propagation, enabling accurate "on-the-fly" simulations of molecular photochemistry. These simulations offer an alternative route toward gaining quantum dynamics insights, circumventing the challenge of generating ab initio electronic structure data for PES fitting by instead only demanding expensive energy evaluations as and when they are needed.In this Account, we describe the chronological evolution of our own contributions to this field, focusing on describing the algorithmic developments that enable direct MCTDH simulations for complex molecular systems moving on multiple coupled electronic states. Specifically, we highlight active learning strategies for generating PESs during grid-based quantum chemical dynamics simulations, and we discuss the development and impact of novel diabatization schemes to enable direct grid-based simulations of photochemical dynamics; these developments are highlighted in a series of benchmark molecular simulations of systems containing multiple nuclear degrees of freedom moving on multiple coupled electronic states. We hope that the ongoing developments reported here represent a major step forward in tools for modeling excited-state chemistry such as photodissociation, proton and electron transfer, and ultrafast energy dissipation in complex molecular systems.
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Affiliation(s)
- Gareth W. Richings
- Department of Chemistry, University of Warwick, Coventry, United Kingdom CV4 7AL
| | - Scott Habershon
- Department of Chemistry, University of Warwick, Coventry, United Kingdom CV4 7AL
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Gómez S, Soysal EN, Worth GA. Micro-Solvated DMABN: Excited State Quantum Dynamics and Dual Fluorescence Spectra. Molecules 2021; 26:7247. [PMID: 34885829 PMCID: PMC8658867 DOI: 10.3390/molecules26237247] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2021] [Revised: 11/23/2021] [Accepted: 11/24/2021] [Indexed: 12/04/2022] Open
Abstract
In this work, we report a complete analysis by theoretical and spectroscopic methods of the short-time behaviour of 4-(dimethylamino)benzonitrile (DMABN) in the gas phase as well as in cyclohexane, tetrahydrofuran, acetonitrile, and water solution, after excitation to the La state. The spectroscopic properties of DMABN were investigated experimentally using UV absorption and fluorescence emission spectroscopy. The computational study was developed at different electronic structure levels and using the Polarisable Continuum Model (PCM) and explicit solvent molecules to reproduce the solvent environment. Additionally, excited state quantum dynamics simulations in the diabatic picture using the direct dynamics variational multiconfigurational Gaussian (DD-vMCG) method were performed, the largest quantum dynamics "on-the-fly" simulations performed with this method until now. The comparison with fully converged multilayer multiconfigurational time-dependent Hartree (ML-MCTDH) dynamics on parametrised linear vibronic coupling (LVC) potentials show very similar population decays and evolution of the nuclear wavepacket. The ring C=C stretching and three methyl tilting modes are identified as the responsible motions for the internal conversion from the La to the Lb states. No major differences are observed in the ultrafast initial decay in different solvents, but we show that this effect depends strongly on the level of electronic structure used.
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Affiliation(s)
- Sandra Gómez
- Department of Chemistry, University College London, 20 Gordon Street, London WC1H 0AJ, UK;
| | | | - Graham A. Worth
- Department of Chemistry, University College London, 20 Gordon Street, London WC1H 0AJ, UK;
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7
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Christopoulou G, Tran T, Worth GA. Direct nonadiabatic quantum dynamics simulations of the photodissociation of phenol. Phys Chem Chem Phys 2021; 23:23684-23695. [PMID: 34642723 DOI: 10.1039/d1cp01843d] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Gaussian wavepacket methods are becoming popular for the investigation of nonadiabatic molecular dynamics. In the present work, a recently developed efficient algorithm for the Direct Dynamics variational Multi-Configurational Gaussian (DD-vMCG) method has been used to describe the multidimensional photodissociation dynamics of phenol including all degrees of freedom. Full-dimensional quantum dynamic calculations including for the first time six electronic states (1ππ, 11ππ*, 11πσ*, 21πσ*, 21ππ*, 31ππ*), along with a comparison to an existing analytical 4-state model for the potential energy surfaces are presented. Including the fifth singlet excited state is shown to have a significant effect on the nonadiabatic photodissociation of phenol to the phenoxyl radical and hydrogen atom. State population and flux analysis from the DD-vMCG simulations of phenol provided further insights into the decay mechanism, confirming the idea of rapid relaxation to the ground state through the 1ππ/11πσ* conical intersection.
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Affiliation(s)
| | - Thierry Tran
- Department of Chemistry, University College London, London WC1H 0AJ, UK.,Department of Chemistry, Imperial College London, Imperial College London, White City Campus, W12 0BZ London, UK.
| | - Graham A Worth
- Department of Chemistry, University College London, London WC1H 0AJ, UK
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8
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Santoro F, Green JA, Martinez-Fernandez L, Cerezo J, Improta R. Quantum and semiclassical dynamical studies of nonadiabatic processes in solution: achievements and perspectives. Phys Chem Chem Phys 2021; 23:8181-8199. [PMID: 33875988 DOI: 10.1039/d0cp05907b] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
We concisely review the main methodological approaches to model nonadiabatic dynamics in isotropic solutions and their applications. Three general classes of models are identified as the most used to include solvent effects in the simulations. The first model describes the solvent as a set of harmonic collective modes coupled to the solute degrees of freedom, and the second as a continuum, while the third explicitly includes solvent molecules in the calculations. The issues related to the use of these models in semiclassical and quantum dynamical simulations are discussed, as well as the main limitations and perspectives of each approach.
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Affiliation(s)
- Fabrizio Santoro
- CNR-Consiglio Nazionale delle Ricerche, Istituto di Chimica dei Composti Organo Metallici (ICCOM-CNR), SS di Pisa, Area della Ricerca, via G. Moruzzi 1, I-56124 Pisa, Italy.
| | - James A Green
- CNR-Consiglio Nazionale delle Ricerche, Istituto di Biostrutture e Bioimmagini (IBB-CNR), via Mezzocannone 16, I-80136 Napoli, Italy.
| | - Lara Martinez-Fernandez
- Departamento de Química, Facultad de Ciencias and Institute for Advanced Research in Chemistry (IADCHEM), Universidad Autónoma de Madrid, Campus de Excelencia UAM-CSIC, 28049 Madrid, Spain
| | - Javier Cerezo
- Departamento de Química, Facultad de Ciencias and Institute for Advanced Research in Chemistry (IADCHEM), Universidad Autónoma de Madrid, Campus de Excelencia UAM-CSIC, 28049 Madrid, Spain
| | - Roberto Improta
- CNR-Consiglio Nazionale delle Ricerche, Istituto di Biostrutture e Bioimmagini (IBB-CNR), via Mezzocannone 16, I-80136 Napoli, Italy.
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9
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Christopoulou G, Freibert A, Worth GA. Improved algorithm for the direct dynamics variational multi-configurational Gaussian method. J Chem Phys 2021; 154:124127. [PMID: 33810697 DOI: 10.1063/5.0043720] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The Direct Dynamics variational Multi-Configurational Gaussian (DD-vMCG) method provides a fully quantum mechanical solution to the time-dependent Schrödinger equation for the time evolution of nuclei with potential surfaces calculated on-the-fly using a quantum chemistry program. Initial studies have shown its potential for flexible and accurate simulations of non-adiabatic excited-state molecular dynamics. In this paper, we present developments to the DD-vMCG algorithm that improve both its accuracy and efficiency. First, a new, efficient parallel algorithm to control the DD-vMCG database of quantum chemistry points is presented along with improvements to the Shepard interpolation scheme. Second, the use of symmetry in describing the potential surfaces is introduced along with a new phase convention in the propagation diabatization. Benchmark calculations on the allene radical cation including all degrees of freedom then show that the new scheme is able to produce a consistent non-adiabatic coupling vector field. This new DD-vMCG version thus opens the route for effectively and accurately treating complex chemical systems using quantum dynamics simulations.
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Affiliation(s)
| | - Antonia Freibert
- Department of Chemistry, University College London, London WC1H 0AJ, United Kingdom
| | - Graham A Worth
- Department of Chemistry, University College London, London WC1H 0AJ, United Kingdom
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10
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Dutta J, Mukherjee S, Naskar K, Ghosh S, Mukherjee B, Ravi S, Adhikari S. The role of electron-nuclear coupling on multi-state photoelectron spectra, scattering processes and phase transitions. Phys Chem Chem Phys 2020; 22:27496-27524. [PMID: 33283826 DOI: 10.1039/d0cp04052e] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We present first principle based beyond Born-Oppenheimer (BBO) theory and its applications on various models as well as realistic spectroscopic and scattering processes, where the Jahn-Teller (JT) theory is brought in conjunction with the BBO approach on the phase transition of lanthanide complexes. Over one and half decades, our development of BBO theory is demonstrated with ab initio calculations on representative molecules of spectroscopic interest (NO2 radical, Na3 and K3 clusters, NO3 radical, C6H6+ and 1,3,5-C6H3F3+ radical cations) as well as triatomic reactive scattering processes (H+ + H2 and F + H2). Such an approach exhibits the effect of JT, Renner-Teller (RT) and pseudo Jahn-Teller (PJT) type of interactions. While implementing the BBO theory, we generate highly accurate diabatic potential energy surfaces (PESs) to carry out quantum dynamics calculation and find excellent agreement with experimental photoelectron spectra of spectroscopic systems and cross-sections/rate constants of scattering processes. On the other hand, such electron-nuclear couplings incorporated through JT theory play a crucial role in dictating higher energy satellite transitions in the dielectric function spectra of the LaMnO3 complex. Overall, this article thoroughly sketches the current perspective of the BBO approach and its connection with JT theory with various applications on physical and chemical processes.
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Affiliation(s)
- Joy Dutta
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700032, India.
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Ravi S, Mukherjee S, Mukherjee B, Adhikari S, Sathyamurthy N, Baer M. Non-adiabatic coupling as a frictional force in (He, H, H)+ dynamics and the formation of HeH2+. Mol Phys 2020. [DOI: 10.1080/00268976.2020.1811907] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Affiliation(s)
- Satyam Ravi
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Kolkata, India
| | - Soumya Mukherjee
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Kolkata, India
| | - Bijit Mukherjee
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Kolkata, India
| | - Satrajit Adhikari
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Kolkata, India
| | | | - Michael Baer
- The Fritz Haber Center for Molecular Dynamics, The Hebrew University of Jerusalem, Jerusalem, Israel
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12
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Richings GW, Habershon S. A new diabatization scheme for direct quantum dynamics: Procrustes diabatization. J Chem Phys 2020; 152:154108. [DOI: 10.1063/5.0003254] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Gareth W. Richings
- Department of Chemistry, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Scott Habershon
- Department of Chemistry, University of Warwick, Coventry CV4 7AL, United Kingdom
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13
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Naskar K, Mukherjee S, Mukherjee B, Ravi S, Mukherjee S, Sardar S, Adhikari S. ADT: A Generalized Algorithm and Program for Beyond Born–Oppenheimer Equations of “N” Dimensional Sub-Hilbert Space. J Chem Theory Comput 2020; 16:1666-1680. [DOI: 10.1021/acs.jctc.9b00948] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Koushik Naskar
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700032, India
| | - Soumya Mukherjee
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700032, India
| | - Bijit Mukherjee
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700032, India
| | - Satyam Ravi
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700032, India
| | - Saikat Mukherjee
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700032, India
| | - Subhankar Sardar
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700032, India
- Department of Chemistry, Bhatter College, Dantan, Paschim Medinipur 721426, India
| | - Satrajit Adhikari
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700032, India
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14
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Zhou W, Mandal A, Huo P. Quasi-Diabatic Scheme for Nonadiabatic On-the-Fly Simulations. J Phys Chem Lett 2019; 10:7062-7070. [PMID: 31665889 DOI: 10.1021/acs.jpclett.9b02747] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
We use the quasi-diabatic (QD) propagation scheme to perform on-the-fly nonadiabatic simulations of the photodynamics of ethylene. The QD scheme enables a seamless interface between accurate diabatic-based quantum dynamics approaches and adiabatic electronic structure calculations, explicitly avoiding any efforts to construct global diabatic states or reformulate the diabatic dynamics approach to the adiabatic representation. Using the partial linearized path-integral approach and the symmetrical quasi-classical approach as the diabatic dynamics methods, the QD propagation scheme enables direct nonadiabatic simulation with complete active space self-consistent field on-the-fly electronic structure calculations. The population dynamics obtained from both approaches are in a close agreement with the quantum wavepacket-based method and outperform the widely used trajectory surface-hopping approach. Further analysis of the ethylene photodeactivation pathways demonstrates the correct predictions of competing processes of nonradiative relaxation mechanism through various conical intersections. This work provides the foundation of using accurate diabatic dynamics approaches and on-the-fly adiabatic electronic structure information to perform ab initio nonadiabatic simulation.
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Affiliation(s)
- Wanghuai Zhou
- Advanced Functional Material and Photoelectric Technology Research Institution, School of Science , Hubei University of Automotive Technology , Shiyan , Hubei 442002 , People's Republic of China
- Department of Chemistry , University of Rochester , 120 Trustee Road , Rochester , New York 14627 , United States
| | - Arkajit Mandal
- Department of Chemistry , University of Rochester , 120 Trustee Road , Rochester , New York 14627 , United States
| | - Pengfei Huo
- Department of Chemistry , University of Rochester , 120 Trustee Road , Rochester , New York 14627 , United States
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15
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Mukherjee B, Naskar K, Mukherjee S, Ghosh S, Sahoo T, Adhikari S. Beyond Born–Oppenheimer theory for spectroscopic and scattering processes. INT REV PHYS CHEM 2019. [DOI: 10.1080/0144235x.2019.1672987] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Affiliation(s)
- Bijit Mukherjee
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Jadavpur, Kolkata, India
| | - Koushik Naskar
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Jadavpur, Kolkata, India
| | - Soumya Mukherjee
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Jadavpur, Kolkata, India
| | - Sandip Ghosh
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Jadavpur, Kolkata, India
| | - Tapas Sahoo
- Department of Chemistry, University of Waterloo, Waterloo, Ontario, Canada
| | - Satrajit Adhikari
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Jadavpur, Kolkata, India
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16
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Ibele LM, Nicolson A, Curchod BFE. Excited-state dynamics of molecules with classically driven trajectories and Gaussians. Mol Phys 2019. [DOI: 10.1080/00268976.2019.1665199] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Affiliation(s)
- Lea M. Ibele
- Department of Chemistry, Durham University, Durham, UK
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17
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Accomasso D, Persico M, Granucci G. Diabatization by Localization in the Framework of Configuration Interaction Based on Floating Occupation Molecular Orbitals (FOMO−CI). CHEMPHOTOCHEM 2019. [DOI: 10.1002/cptc.201900056] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Affiliation(s)
- Davide Accomasso
- Dipartimento di Chimica e Chimica IndustrialeUniversitá di Pisa v. G. Moruzzi 13 I-56124 Pisa Italy
| | - Maurizio Persico
- Dipartimento di Chimica e Chimica IndustrialeUniversitá di Pisa v. G. Moruzzi 13 I-56124 Pisa Italy
| | - Giovanni Granucci
- Dipartimento di Chimica e Chimica IndustrialeUniversitá di Pisa v. G. Moruzzi 13 I-56124 Pisa Italy
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18
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Xie W, Sapunar M, Došlić N, Sala M, Domcke W. Assessing the performance of trajectory surface hopping methods: Ultrafast internal conversion in pyrazine. J Chem Phys 2019; 150:154119. [DOI: 10.1063/1.5084961] [Citation(s) in RCA: 35] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- Weiwei Xie
- Department of Chemistry, Technical University of Munich, Lichtenbergstr. 4, 85747 Garching, Germany
- Institute of Biological Interfaces (IBG-2), Karlsruhe Institute of Technology, 76131 Karlsruhe, Germany
- Institute of Physical Chemistry, Karlsruhe Institute of Technology, Kaiserstr. 12, 76131 Karlsruhe, Germany
| | - Marin Sapunar
- Department of Physical Chemistry, Ruđer Bošković Institute, HR-10000 Zagreb, Croatia
| | - Nađa Došlić
- Department of Physical Chemistry, Ruđer Bošković Institute, HR-10000 Zagreb, Croatia
| | - Matthieu Sala
- Laboratoire Interdisciplinaire Carnot de Bourgogne UMR 6303 CNRS, Université de Bourgogne, BP 47870, F-21078 Dijon, France and Institut für Physikalische Chemie, Christian-Albrechts-Universität zu Kiel, Olshausenstr. 40, D-24098 Kiel, Germany
| | - Wolfgang Domcke
- Department of Chemistry, Technical University of Munich, Lichtenbergstr. 4, 85747 Garching, Germany
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19
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Polyak I, Richings GW, Habershon S, Knowles PJ. Direct quantum dynamics using variational Gaussian wavepackets and Gaussian process regression. J Chem Phys 2019; 150:041101. [PMID: 30709252 DOI: 10.1063/1.5086358] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The method of direct variational quantum nuclear dynamics in a basis of Gaussian wavepackets, combined with the potential energy surfaces fitted on-the-fly using Gaussian process regression, is described together with its implementation. Enabling exact and efficient analytic evaluation of Hamiltonian matrix elements, this approach allows for black-box quantum dynamics of multidimensional anharmonic molecular systems. Example calculations of intra-molecular proton transfer on the electronic ground state of salicylaldimine are provided, and future algorithmic improvements as well as the potential for multiple-state non-adiabatic dynamics are discussed.
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Affiliation(s)
- Iakov Polyak
- School of Chemistry, Cardiff University, Main Building, Park Place, Cardiff CF10 3AT, United Kingdom
| | - Gareth W Richings
- Department of Chemistry and Centre for Scientific Computing, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Scott Habershon
- Department of Chemistry and Centre for Scientific Computing, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Peter J Knowles
- School of Chemistry, Cardiff University, Main Building, Park Place, Cardiff CF10 3AT, United Kingdom
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20
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Richings G, Robertson C, Habershon S. Can we use on-the-fly quantum simulations to connect molecular structure and sunscreen action? Faraday Discuss 2019; 216:476-493. [DOI: 10.1039/c8fd00228b] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
Direct MCTDH quantum dynamics simulations, with automatic active coordinate generation, applied to potential molecular sunscreens.
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Affiliation(s)
- Gareth W. Richings
- Department of Chemistry and Centre for Scientific Computing
- University of Warwick
- Coventry
- UK
| | - Christopher Robertson
- Department of Chemistry and Centre for Scientific Computing
- University of Warwick
- Coventry
- UK
| | - Scott Habershon
- Department of Chemistry and Centre for Scientific Computing
- University of Warwick
- Coventry
- UK
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21
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Richings GW, Robertson C, Habershon S. Improved on-the-Fly MCTDH Simulations with Many-Body-Potential Tensor Decomposition and Projection Diabatization. J Chem Theory Comput 2018; 15:857-870. [DOI: 10.1021/acs.jctc.8b00819] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Gareth W. Richings
- Department of Chemistry and Centre for Scientific Computing, University of Warwick, Coventry, CV4 7AL, U.K
| | - Christopher Robertson
- Department of Chemistry and Centre for Scientific Computing, University of Warwick, Coventry, CV4 7AL, U.K
| | - Scott Habershon
- Department of Chemistry and Centre for Scientific Computing, University of Warwick, Coventry, CV4 7AL, U.K
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22
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Joubert-Doriol L, Izmaylov AF. Nonadiabatic Quantum Dynamics with Frozen-Width Gaussians. J Phys Chem A 2018; 122:6031-6042. [DOI: 10.1021/acs.jpca.8b03404] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Loïc Joubert-Doriol
- Department of Physical and Environmental Sciences, University of Toronto Scarborough, Toronto, Ontario M1C 1A4, Canada
- Chemical Physics Theory Group, Department of Chemistry, University of Toronto, Toronto, Ontario M5S 3H6, Canada
| | - Artur F. Izmaylov
- Department of Physical and Environmental Sciences, University of Toronto Scarborough, Toronto, Ontario M1C 1A4, Canada
- Chemical Physics Theory Group, Department of Chemistry, University of Toronto, Toronto, Ontario M5S 3H6, Canada
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23
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Richings GW, Habershon S. MCTDH on-the-fly: Efficient grid-based quantum dynamics without pre-computed potential energy surfaces. J Chem Phys 2018; 148:134116. [DOI: 10.1063/1.5024869] [Citation(s) in RCA: 54] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Gareth W. Richings
- Department of Chemistry and Centre for Scientific Computing, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Scott Habershon
- Department of Chemistry and Centre for Scientific Computing, University of Warwick, Coventry CV4 7AL, United Kingdom
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24
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Joubert-Doriol L, Izmaylov AF. Variational nonadiabatic dynamics in the moving crude adiabatic representation: Further merging of nuclear dynamics and electronic structure. J Chem Phys 2018; 148:114102. [PMID: 29566517 DOI: 10.1063/1.5020655] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A new methodology of simulating nonadiabatic dynamics using frozen-width Gaussian wavepackets within the moving crude adiabatic representation with the on-the-fly evaluation of electronic structure is presented. The main feature of the new approach is the elimination of any global or local model representation of electronic potential energy surfaces; instead, the electron-nuclear interaction is treated explicitly using the Gaussian integration. As a result, the new scheme does not introduce any uncontrolled approximations. The employed variational principle ensures the energy conservation and leaves the number of electronic and nuclear basis functions as the only parameter determining the accuracy. To assess performance of the approach, a model with two electronic and two nuclear spacial degrees of freedom containing conical intersections between potential energy surfaces has been considered. Dynamical features associated with nonadiabatic transitions and nontrivial geometric (or Berry) phases were successfully reproduced within a limited basis expansion.
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Affiliation(s)
- Loïc Joubert-Doriol
- Department of Physical and Environmental Sciences, University of Toronto Scarborough, Toronto, Ontario M1C 1A4, Canada and Chemical Physics Theory Group, Department of Chemistry, University of Toronto, Toronto, Ontario M5S 3H6, Canada
| | - Artur F Izmaylov
- Department of Physical and Environmental Sciences, University of Toronto Scarborough, Toronto, Ontario M1C 1A4, Canada and Chemical Physics Theory Group, Department of Chemistry, University of Toronto, Toronto, Ontario M5S 3H6, Canada
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Comparison of the results of a mean-field mixed quantum/classical method with full quantum predictions for nonadiabatic dynamics: application to the $$\pi \pi ^*/n\pi ^*$$ π π ∗ / n π ∗ decay of thymine. Theor Chem Acc 2018. [DOI: 10.1007/s00214-018-2218-z] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
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26
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Cerezo J, Liu Y, Lin N, Zhao X, Improta R, Santoro F. Mixed Quantum/Classical Method for Nonadiabatic Quantum Dynamics in Explicit Solvent Models: The ππ*/nπ* Decay of Thymine in Water as a Test Case. J Chem Theory Comput 2018; 14:820-832. [PMID: 29207245 DOI: 10.1021/acs.jctc.7b01015] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We present a novel mixed quantum classical dynamical method to include solvent effects on internal conversion (IC) processes. All the solute degrees of freedom are represented by a wavepacket moving according to nonadiabatic quantum dynamics, while the motion of an explicit solvent model is described by an ensemble of classical trajectories. The mutual coupling of the solute and solvent dynamics is included within a mean-field framework and the quantum and classical equations of motions are solved simultaneously. As a test case we apply our method to the ultrafast ππ* → nπ* decay of thymine in water. Solvent dynamical response modifies IC yield already on the 50 fs time scale. This effect is due to water librational motions that stabilize the most populated state. Pure static disorder, that is, the existence of different solvent configurations when photoexcitation takes place, also has a remarkable impact on the dynamics.
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Affiliation(s)
- Javier Cerezo
- CNR-Consiglio Nazionale delle Ricerche, Istituto di Chimica dei Composti Organo Metallici (ICCOM-CNR) , SS di Pisa, Area della Ricerca, via G. Moruzzi 1, I-56124 Pisa, Italy.,Departamento de Química Física, Universidad de Murcia , 30100 Murcia, Spain
| | - Yanli Liu
- CNR-Consiglio Nazionale delle Ricerche, Istituto di Chimica dei Composti Organo Metallici (ICCOM-CNR) , SS di Pisa, Area della Ricerca, via G. Moruzzi 1, I-56124 Pisa, Italy.,School of Physics and Optoelectronics Engineering, Ludong University , 264025 Yantai, P. R. China
| | - Na Lin
- State Key Laboratory of Crystal Materials, Shandong University , 250100 Jinan, Shandong, P. R. China
| | - Xian Zhao
- State Key Laboratory of Crystal Materials, Shandong University , 250100 Jinan, Shandong, P. R. China
| | - Roberto Improta
- CNR-Consiglio Nazionale delle Ricerche, Istituto di Biostrutture e Bioimmagini (IBB-CNR) , via Mezzocannone 16, I-80136 Napoli, Italy.,LIDYL, CEA, CNRS, Université Paris-Saclay , F-91191 Gif-sur-Yvette, France
| | - Fabrizio Santoro
- CNR-Consiglio Nazionale delle Ricerche, Istituto di Chimica dei Composti Organo Metallici (ICCOM-CNR) , SS di Pisa, Area della Ricerca, via G. Moruzzi 1, I-56124 Pisa, Italy
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