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Kawasaki A, Anderson JSM. Warning! The negative divergence of the stress-tensor does not always yield the Ehrenfest force. J Chem Phys 2023; 159:234120. [PMID: 38117022 DOI: 10.1063/5.0174905] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2023] [Accepted: 10/30/2023] [Indexed: 12/21/2023] Open
Abstract
It has been assumed that the negative divergence of all stress tensors in common use yields the same force. This work finds that this is untrue, and, in fact, can vary wildly. We demonstrate this for the hydrogen atom, the one-particle isotropic harmonic oscillator, and a particle in an infinite spherical well where the exact density, pair-density, and the first order reduced density matrix are known for ground and excited states without any approximation. The Ehrenfest stress-tensor is introduced as any stress-tensor whose negative divergence will yield the corresponding Ehrenfest force for the same system when the exact wave-function is utilized. Stress-tensors within the literature are examined to show those that are Ehrenfest stress-tensors. Those that differ are demonstrated by how they differ within an exact formulation. The proof that the negative divergence of an Ehrenfest stress-tensor yields the Ehrenfest force is summarized.
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Affiliation(s)
- Airi Kawasaki
- Graduate School of Science and Technology, Gunma University, 1-5-1 Tenjin-cho, Kiryu, Gunma, Japan
| | - James S M Anderson
- Instituto de Química, Universidad Nacional Autónoma de México, Universidad 300, Ciudad Universitaria, Ciudad de México 04510, Mexico
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Abd El-Mageed H. Zinc oxide nanoclusters and nanoparticles as a drug carrier for cisplatin and nedaplatin anti-cancer drugs, insights from DFT methods and MC simulation. Mol Phys 2020. [DOI: 10.1080/00268976.2020.1842533] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Affiliation(s)
- H.R. Abd El-Mageed
- Micro-analysis and Environmental Research and Community Services Center, Faculty of Science, Beni-Suef University, Beni-Suef City, Egypt
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Li S, Xu T, van Mourik T, Früchtl H, Kirk SR, Jenkins S. Halogen and Hydrogen Bonding in Halogenabenzene/NH 3 Complexes Compared Using Next-Generation QTAIM. Molecules 2019; 24:E2875. [PMID: 31398800 PMCID: PMC6720212 DOI: 10.3390/molecules24162875] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2019] [Revised: 08/05/2019] [Accepted: 08/06/2019] [Indexed: 11/17/2022] Open
Abstract
Next-generation quantum theory of atoms in molecules (QTAIM) was used to investigate the competition between hydrogen bonding and halogen bonding for the recently proposed (Y = Br, I, At)/halogenabenzene/NH3 complex. Differences between using the SR-ZORA Hamiltonian and effective core potentials (ECPs) to account for relativistic effects with increased atomic mass demonstrated that next-generation QTAIM is a much more responsive tool than conventional QTAIM. Subtle details of the competition between halogen bonding and hydrogen bonding were observed, indicating a mixed chemical character shown in the 3-D paths constructed from the bond-path framework set B. In addition, the use of SR-ZORA reduced or entirely removed spurious features of B on the site of the halogen atoms.
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Affiliation(s)
- Shuman Li
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research and Key Laboratory of Resource; National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources, College of Chemistry and Chemical Engineering, Hunan Normal, Changsha 410081, Hunan, China
| | - Tianlv Xu
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research and Key Laboratory of Resource; National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources, College of Chemistry and Chemical Engineering, Hunan Normal, Changsha 410081, Hunan, China
| | - Tanja van Mourik
- EaStCHEM School of Chemistry, University of St Andrews, North Haugh, St Andrews, Fife KY16 9ST, Scotland, UK.
| | - Herbert Früchtl
- EaStCHEM School of Chemistry, University of St Andrews, North Haugh, St Andrews, Fife KY16 9ST, Scotland, UK
| | - Steven R Kirk
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research and Key Laboratory of Resource; National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources, College of Chemistry and Chemical Engineering, Hunan Normal, Changsha 410081, Hunan, China.
| | - Samantha Jenkins
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research and Key Laboratory of Resource; National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources, College of Chemistry and Chemical Engineering, Hunan Normal, Changsha 410081, Hunan, China.
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Anderson JSM, Rodríguez JI, Ayers PW, Trujillo-González DE, Götz AW, Autschbach J, Castillo-Alvarado FL, Yamashita K. Molecular QTAIM Topology Is Sensitive to Relativistic Corrections. Chemistry 2019; 25:2538-2544. [PMID: 30393899 DOI: 10.1002/chem.201804464] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2018] [Indexed: 11/11/2022]
Abstract
The topology of the molecular electron density of benzene dithiol gold cluster complex Au4 -S-C6 H4 -S'-Au'4 changed when relativistic corrections were made and the structure was close to a minimum of the Born-Oppenheimer energy surface. Specifically, new bond paths between hydrogen atoms on the benzene ring and gold atoms appeared, indicating that there is a favorable interaction between these atoms at the relativistic level. This is consistent with the observation that gold becomes a better electron acceptor when relativistic corrections are applied. In addition to relativistic effects, here, we establish the sensitivity of molecular topology to basis sets and convergence thresholds for geometry optimization.
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Affiliation(s)
- James S M Anderson
- Department of Chemistry & Chemical Biology, McMaster University, Hamilton, Ontario, L8S4M1, Canada.,iTHES Research Group, RIKEN, 2-1, Hirosawa, Wako-shi, Saitama, 351-0198, Japan.,Instituto de Química, Universidad Nacional Autónoma de México, Universidad 300, Ciudad Universitaria, Ciudad de México, 04510, Mexico
| | - Juan I Rodríguez
- Escuela Superior de Física y Matemáticas, Instituto Politécnico Nacional, Edificio 9, U.P. A.L.M, Col. San Pedro Zacatenco, C.P., 07738, Ciudad de México, México
| | - Paul W Ayers
- Department of Chemistry & Chemical Biology, McMaster University, Hamilton, Ontario, L8S4M1, Canada
| | - Daniel E Trujillo-González
- Escuela Superior de Física y Matemáticas, Instituto Politécnico Nacional, Edificio 9, U.P. A.L.M, Col. San Pedro Zacatenco, C.P., 07738, Ciudad de México, México
| | - Andreas W Götz
- San Diego Supercomputer Center, University of California San Diego, 9500 Gilman Drive, La Jolla, 92093-0505, California, USA
| | - Jochen Autschbach
- Department of Chemistry, University at Buffalo, State University of New York, Buffalo, 14260-3000, NY, USA
| | - Fray L Castillo-Alvarado
- Escuela Superior de Física y Matemáticas, Instituto Politécnico Nacional, Edificio 9, U.P. A.L.M, Col. San Pedro Zacatenco, C.P., 07738, Ciudad de México, México
| | - Koichi Yamashita
- Department of Chemical System Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-8656, Japan
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Affiliation(s)
- Lei-Jiao Li
- School of Chemistry & Environmental Engineering; Changchun University of Science & Technology; Changchun, Jilin 130022 China
- State Key Laboratory of Rare Earth Resource Utilization; Changchun Institute of Applied Chemistry, Chinese Academy of Sciences; Changchun, Jilin 130022 China
| | - Basharat Ali
- State Key Laboratory of Rare Earth Resource Utilization; Changchun Institute of Applied Chemistry, Chinese Academy of Sciences; Changchun, Jilin 130022 China
- University of Science and Technology of China; Hefei Anhui 230026 China
| | - Zhongfang Chen
- Department of Chemistry; University of Puerto Rico; Rio Piedras Campus, San Juan PR 00931 USA
| | - Zhong-Ming Sun
- State Key Laboratory of Rare Earth Resource Utilization; Changchun Institute of Applied Chemistry, Chinese Academy of Sciences; Changchun, Jilin 130022 China
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Anderson JSM, Ayers PW. The general setting for the zero-flux condition: The lagrangian and zero-flux conditions that give the heisenberg equation of motion. J Comput Chem 2018; 39:1051-1058. [DOI: 10.1002/jcc.25135] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2017] [Revised: 11/12/2017] [Accepted: 11/18/2017] [Indexed: 01/16/2023]
Affiliation(s)
- James S. M. Anderson
- Department of Chemistry & Chemical Biology; McMaster University; Hamilton Ontario Canada
- iTHES Research Group, RIKEN, 2-1, Hirosawa; Wako-shi Saitama 351-0198 Japan
- Department of Chemical System Engineering, School of Engineering; University of Tokyo, 7-3-1, Hongo; Bunkyo-ku Tokyo 113-8656 Japan
| | - Paul W. Ayers
- Department of Chemistry & Chemical Biology; McMaster University; Hamilton Ontario Canada
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