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Cammi R, Chen B. Activation volume and quantum tunneling in the hydrogen transfer reaction between methyl radical and methane: A first computational study. J Chem Phys 2024; 160:104103. [PMID: 38465680 DOI: 10.1063/5.0195973] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2024] [Accepted: 02/20/2024] [Indexed: 03/12/2024] Open
Abstract
We present a theory of the effect of quantum tunneling on the basic parameter that characterizes the effect of pressure on the rate constant of chemical reactions in a dense phase, the activation volume. This theory results in combining, on the one hand, the extreme pressure polarizable continuum model, a quantum chemical method to describe the effect of pressure on the reaction energy profile in a dense medium, and, on the other hand, the semiclassical version of the transition state theory, which includes the effect of quantum tunneling through a transmission coefficient. The theory has been applied to the study of the activation volume of the model reaction of hydrogen transfer between methyl radical and methane, including the primary isotope substitution of hydrogen with deuterium (H/D). The analysis of the numerical results offers, for the first time, a clear insight into the effect of quantum tunneling on the activation volume for this hydrogen transfer reaction: this effect results from the different influences that pressure has on the competing thermal and tunneling reaction mechanisms. Furthermore, the computed kinetic isotope effect (H/D) on the activation volume for this model hydrogen transfer correlates well with the experimental data for more complex hydrogen transfer reactions.
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Affiliation(s)
- Roberto Cammi
- Department of Chemistry, Life Sciences and Environmental Sustainability, Università degli Studi di Parma, Parco Area delle Scienze 11/a, 43124 Parma, Italy
| | - Bo Chen
- Donostia International Physics Center, Paseo Manuel de Lardizabal 4, 20018 Donostia-San Sebastian, Spain
- IKERBASQUE, Basque Foundation for Science, Plaza Euskadi 5, 48009 Bilbao, Spain
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Gao X, Yu XY, Chang CR. Perceptions on the Treatment of Apparent Isotope Effects during the Analyses of Reaction Rate and Mechanism. Phys Chem Chem Phys 2022; 24:15182-15194. [DOI: 10.1039/d2cp00825d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Isotope substitution, a compelling tool of physical chemistry, has been broadly applied in the research field of heterogeneous catalysis. In general, upon the differences in mass-related atomic vibrational frequencies and...
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Laude G, Calderini D, Welsch R, Richardson JO. Calculations of quantum tunnelling rates for muonium reactions with methane, ethane and propane. Phys Chem Chem Phys 2020; 22:16843-16854. [PMID: 32666960 DOI: 10.1039/d0cp01346c] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Thermal rate constants for Mu + CH4, Mu + C2H6 and Mu + C3H8 and their equivalent reactions with H were evaluated with ab initio instanton rate theory. The potential-energy surfaces are fitted using Gaussian process regression to high-level electronic-structure calculations evaluated around the tunnelling pathway. This method was able to successfully reproduce various experimental measurements for the rate constant of these reactions. However, it was not able to reproduce the faster-than-expected rate of Mu + C3H8 at 300 K reported by Fleming et al. [Phys. Chem. Chem. Phys., 2015, 17, 19901 and Phys. Chem. Chem. Phys., 2020, 22, 6326]. Analysis of our results indicates that the kinetic isotope effect at this temperature is not significantly influenced by quantum tunnelling. We consider many possible factors for the discrepancy between theory and experiment but conclude that in each case, the instanton approximation is unlikely to be the cause of the error. This is in part based on the good agreement we find between the instanton predictions and new multiconfigurational time-dependent Hartree (MCTDH) calculations for Mu + CH4 using the same potential-energy surface. Further experiments will therefore be needed to resolve this issue.
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Affiliation(s)
- Gabriel Laude
- Laboratory of Physical Chemistry, ETH Zürich, Switzerland.
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Burd TAH, Clary DC. Analytic Route to Tunneling Splittings Using Semiclassical Perturbation Theory. J Chem Theory Comput 2020; 16:3486-3493. [DOI: 10.1021/acs.jctc.0c00207] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Timothy A. H. Burd
- Physical and Theoretical Chemical Laboratory, University of Oxford, South Parks Road, Oxford OX1 3QZ, United Kingdom
| | - David C. Clary
- Physical and Theoretical Chemical Laboratory, University of Oxford, South Parks Road, Oxford OX1 3QZ, United Kingdom
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Shan X, Sambrook MR, Clary DC. Calculations on the unimolecular decomposition of the nerve agent VX. Phys Chem Chem Phys 2020; 22:564-574. [PMID: 31845698 DOI: 10.1039/c9cp05109k] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
It is very difficult to perform experiments on the physical parameters for the thermal decomposition of chemical nerve agents such as VX and computations, therefore, are useful. The reaction dynamics of the gas-phase pericyclic hydrogen transfer of the nerve agent VX is studied computationally. The geometries of the stationary structures are calculated at M06-2X/jul-cc-pVTZ level of theory. Single point energy calculations are carried out at the CBS/QB3 level to correct the energy barriers. Canonical reaction rate constants are calculated as a function of temperature. The one-dimensional semiclassical transition state theory is used to analyse the quantum tunneling effects. A reduced-dimensional hindered rotor model is proposed, tested, and applied to calculate the vibrational partition functions. It is found that the ester (O-side) and thioester (S-side) side chains of VX undergo pericyclic H-transfer reactions that result in decomposition of the molecule. The S-side reaction is favoured both kinetically and thermodynamically and dominates the pyrolysis over the temperature range from 600 K to 1000 K. It is predicted that VX completely decomposes in 2 s at temperatures above 750 K.
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Affiliation(s)
- Xiao Shan
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, South Parks Road, Oxford, OX1 3QZ, UK.
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Burd TAH, Shan X, Clary DC. Hydrogen tunnelling in the rearrangements of carbenes: the role of dynamical calculations. Phys Chem Chem Phys 2020; 22:962-965. [DOI: 10.1039/c9cp06300e] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A tunnelling controlled reaction is studied with semiclassical transition state theory, rationalising the results of experiment.
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Affiliation(s)
- Timothy A. H. Burd
- Physical and Theoretical Chemical Laboratory
- University of Oxford
- Oxford
- UK
| | - Xiao Shan
- Physical and Theoretical Chemical Laboratory
- University of Oxford
- Oxford
- UK
| | - David C. Clary
- Physical and Theoretical Chemical Laboratory
- University of Oxford
- Oxford
- UK
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7
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Tunnelling in cyclocarbenes: An application of Semiclassical Transition State Theory in reduced dimensions. Chem Phys Lett 2019. [DOI: 10.1016/j.cplett.2019.136783] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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Kerkeni B, Bacchus-Montabonel MC, Shan X, Bromley ST. Understanding H 2 Formation on Hydroxylated Pyroxene Nanoclusters: Ab Initio Study of the Reaction Energetics and Kinetics. J Phys Chem A 2019; 123:9282-9291. [PMID: 31584814 DOI: 10.1021/acs.jpca.9b06713] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The rate constants of H2 formation on five models of silicate nanoclusters with varying degrees of hydroxylation, (Mg4Si4O12)(H2O)N, were computed over a wide temperature range [180-2000 K]. We tested nine combinations of density functional methods and basis sets for their suitability for calculating reaction energies and barrier heights, and we computed the minimum energy H + H → H2 reaction paths on each nanocluster. Subsequently, we computed the rate constants employing three semiclassical approaches that take into account tunneling and nonclassical reflection effects by means of the zero curvature tunneling (ZCT), the small curvature tunneling (SCT), and the one-dimensional semiclassical transition state theory (SCTST) methods, which all provided comparable results. Our investigations show that the H2 formation process following the Langmuir-Hinshelwood (LH) mechanism is more efficient on the hydroxylated (N = 1-4) nanoclusters than on the bare (N = 0) one due to relatively higher reaction barrier height on the latter. H2 formation is found to have the smallest barrier and the most exothermic reaction for the moderately hydroxylated (Mg4Si4O12)(H2O)2 nanocluster for all nine considered methods. Overall, we conclude that all the considered nanoclusters are very efficient catalyzing grains for H2 formation in the physical conditions of the interstellar medium (ISM) with pyroxene nanosilicates having moderate to high hydroxylation being more efficient than bare nanograins.
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Affiliation(s)
- Boutheïna Kerkeni
- Département de Physique, Laboratoire de Physique de la Matière Condensée (LPMC) Faculté des Sciences de Tunis , Université de Tunis El Manar , Campus Universitaire, 2092 , Tunis , Tunisia.,Institut Supérieur des Arts Multimédia de la Manouba , Université de la Manouba , 2010 , la Manouba , Tunisia.,Sorbonne Université, Observatoire de Paris, Université PSL, CNRS, LERMA , F-92195 Meudon , France.,Université de Lyon, Université Claude Bernard Lyon 1, CNRS, Institut Lumière Matière , Villeurbanne cedex 69622 , France
| | | | - Xiao Shan
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry , University of Oxford , South Parks Road , Oxford OX1 3QZ , United Kingdom
| | - Stefan T Bromley
- Departament de Ciencia de Materiales i Química Física & Institut de Química Teorica i Computacional , Universitat de Barcelona , Barcelona 08028 , Spain.,Institució Catalana de Recerca i Estudis Avançats (ICREA) , Barcelona 08010 , Spain
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Shan X, Burd TAH, Clary DC. New Developments in Semiclassical Transition-State Theory. J Phys Chem A 2019; 123:4639-4657. [DOI: 10.1021/acs.jpca.9b01987] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Xiao Shan
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, South Parks Road, Oxford OX1 3QZ, United Kingdom
| | - Timothy A. H. Burd
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, South Parks Road, Oxford OX1 3QZ, United Kingdom
| | - David C. Clary
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, South Parks Road, Oxford OX1 3QZ, United Kingdom
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Shan X, Sambrook MR, Clary DC. Theoretical Study of Gas-Phase Unimolecular Decomposition of Simulants of the Nerve Agent VX. J Phys Chem A 2019; 123:59-72. [PMID: 30511567 DOI: 10.1021/acs.jpca.8b10416] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
In order to further understand and support approaches for the degradation and destruction of toxic chemicals, the thermal decomposition of the nerve agent VX through possible pericyclic hydrogen transfer reactions is investigated using simulant molecules. A total of four simulant molecules are studied. Three of them have only one possible H-transfer site, while the other has two. They are chosen to bring physical insights into individual steps of the pericyclic reaction mechanism as well as the possible existence of competing mechanisms. The unimolecular reaction rate constants at the high-pressure limit are calculated. Geometries of stationary structures on the potential energy surfaces are calculated with the MP2 method as well as the B3LYP and M06-2X functionals and 6-311++G(d,p), jul-cc-pVTZ, and aug-cc-pVTZ basis sets. The barrier heights are corrected using energy values obtained at the CBS/QB3 level of theory. The contribution of the quantum tunneling effect to the reaction rate constants is included using one-dimensional semiclassical transition state theory. Adiabatic barrier heights, reaction rate constants, and branching ratio of the competing mechanisms are reported.
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Affiliation(s)
- Xiao Shan
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry , University of Oxford , South Parks Road , Oxford OX1 3QZ , United Kingdom
| | - Mark R Sambrook
- CBR Division, Defence Science and Technology Laboratory (Dstl) , Porton Down , Salisbury SP4 OJQ , United Kingdom
| | - David C Clary
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry , University of Oxford , South Parks Road , Oxford OX1 3QZ , United Kingdom
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Clary DC. Spiers Memorial Lecture : Introductory lecture: quantum dynamics of chemical reactions. Faraday Discuss 2018; 212:9-32. [DOI: 10.1039/c8fd00131f] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
This Spiers Memorial Lecture discusses quantum effects that can be calculated and observed in the chemical reactions of small molecules.
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Affiliation(s)
- David C. Clary
- Physical and Theoretical Chemistry Laboratory
- Department of Chemistry
- University of Oxford
- Oxford
- UK
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12
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Burd TAH, Shan X, Clary DC. Catalysis and tunnelling in the unimolecular decay of Criegee intermediates. Phys Chem Chem Phys 2018; 20:25224-25234. [DOI: 10.1039/c8cp05021j] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Semi-classical Transition State theory can be applied to catalysed atmospheric reactions, but reaction mode anharmonicity must be treated carefully.
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Affiliation(s)
- Timothy A. H. Burd
- Physical and Theoretical Chemical Laboratory
- University of Oxford
- Oxford
- UK
| | - Xiao Shan
- Physical and Theoretical Chemical Laboratory
- University of Oxford
- Oxford
- UK
| | - David C. Clary
- Physical and Theoretical Chemical Laboratory
- University of Oxford
- Oxford
- UK
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