The structural origin of hydration repulsive force

The Molecular Mechanism of Ion Selectivity in Nanopores

Ion channels exhibit strong selectivity for specific ions over others under electrochemical potentials, such as KcsA for K+ over Na+. Based on the thermodynamic analysis, this study is focused on exploring the mechanism of ion selectivity in nanopores. It is well known that ions must lose part of their hydration layer to enter the channel. Therefore, the ion selectivity of a channel is due to the rearrangement of water molecules when entering the nanopore, which may be related to the hydrophobic interactions between ions and channels. In our recent works on hydrophobic interactions, with reference to the critical radius of solute (Rc), it was divided into initial and hydrophobic solvation processes. Additionally, the different dissolved behaviors of solutes in water are expected in various processes, such as dispersed and accumulated distributions in water. Correspondingly, as the ion approaches the nanopore, there seems to exist the "repulsive" or "attractive" forces between them. In the initial process ( Collapse

Key Words

• hydrogen bondings
• hydrophobic interactions
• ion selectivity
• nanopore
• water

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Affiliation(s)

Yan-Nan Chen
Yu-Zhen Liu
Qiang Sun Key Laboratory of Orogenic Belts and Crustal Evolution, The School of Earth and Space Sciences, Ministry of Education, Peking University, Beijing 100871, China; (Y.-N.C.); (Y.-Z.L.)

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The "Beacon" Structural Model of Protein Folding: Application for Trp-Cage in Water

Protein folding is a process in which a polypeptide must undergo folding process to obtain its three-dimensional structure. Thermodynamically, it is a process of enthalpy to overcome the loss of conformational entropy in folding. Folding is primarily related to hydrophobic interactions and intramolecular hydrogen bondings. During folding, hydrophobic interactions are regarded to be the driving forces, especially in the initial structural collapse of a protein. Additionally, folding is guided by the strong interactions within proteins, such as intramolecular hydrogen bondings related to the α-helices and β-sheets of proteins. Therefore, a protein is divided into the folding key (FK) regions related to intramolecular hydrogen bondings and the non-folding key (non-FK) regions. Various conformations are expected for FK and non-FK regions. Different from non-FK regions, it is necessary for FK regions to form the specific conformations in folding, which are regarded as the necessary folding pathways (or "beacons"). Additionally, sequential folding is expected for the FK regions, and the intermediate state is found during folding. They are reflected on the local basins in the free energy landscape (FEL) of folding. To demonstrate the structural model, molecular dynamics (MD) simulations are conducted on the folding pathway of the TRP-cage in water.

A Review of the Processes Associated with the Removal of Oil in Water Pollution

Water plays an essential role in production and refining processes. Many industries that use petrochemicals also require water, especially for cleaning purposes. The wastewaters released by these processes are often rich in petroleum pollutants, which requires significant treatment prior to disposal. The presence of petroleum contaminants in rivers and oceans is a significant threat to human health, as well as to many animal species. A current challenge for most industries and conventional effluent treatment plants is compliance with accepted disposal standards for oil-polluted wastewater. Of particular importance is the processing of dispersed oil in water, as well as oil in water emulsion. Conventional oil and water separation methods for processing oil in water contamination have several technology gaps in terms of applicability and efficiency. The removal and effective processing of dispersed oil and emulsions from oily wastewater is a costly and significant problem. The objective of this paper is to provide a review of the principles associated with oil in water emulsion separation, with the aim of providing a more definitive understanding of the terminology, processes, and methodologies, which will assist the development of a more efficient, innovative and environmentally friendly process for the separation of oily wastewater.

Homogeneous Nucleation Mechanism of NaCl in Aqueous Solutions

In this study, molecular dynamic simulations are employed to investigate the homogeneous nucleation mechanism of NaCl crystal in solutions. According to the simulations, the dissolved behaviors of NaCl in water are dependent on ion concentrations. With increasing NaCl concentrations, the dissolved Na+ and Cl- ions tend to be aggregated in solutions. In combination with our recent studies, the aggregate of dissolved solutes is mainly ascribed to the hydrophobic interactions. Different from the two-step mechanism, no barrier is needed to overcome the formation of the aggregate. In comparison with the classical nucleation theory (CNT), because of the formation of solute aggregate, this lowers the barrier height of nucleation and affects the nucleation mechanism of NaCl crystal in water.