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Murthy Potla K, Parameshwar Adimule S, Poojith N, Osório FAP, Valverde C, Sheena Mary Y, Vankayalapati S. A comparative study of structural and spectroscopic properties of three structurally similar mechanically bending organic single crystals - 2-Amino-3-nitro-5-halo (halo = Cl, Br, or I) pyridine. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2023; 302:123093. [PMID: 37418906 DOI: 10.1016/j.saa.2023.123093] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2023] [Revised: 06/09/2023] [Accepted: 06/29/2023] [Indexed: 07/09/2023]
Abstract
In recent years, scientists have been very interested in single crystals of monoaromatic compounds with mechanical softness, but they are hard to find. The present work reports a comparative study of structural, spectroscopic, and quantum chemical investigations of three structurally similar mechanically bending monoaromatic compounds, namely, 2-amino-3-nitro-5-chloro pyridine (I), 2-amino-3-nitro-5-bromo pyridine (II), and 2-amino-3-nitro-5-iodo pyridine (III). The mechanical responses of the three organic crystals studied here are very intriguing due to the similarity of their chemical structures, which only differ in the presence of halogen atoms (Cl, Br, and I) at the fifth position of the pyridine ring and are explained through examining intermolecular interaction energies from energy frameworks analysis, slip layer topology, and Hirshfeld surface analysis. The crystals of all the three feature one dimensional ribbons comprising alternating NaminoH⋯Onitro and NaminoH⋯Npyridine hydrogen bonds that form R22(12) and R22(8) dimeric rings, respectively. In (III), weak I⋯I interactions link the adjacent ribbons forming a two dimensional sheet. Layer-like structures are observed in all three crystals, with no significant interactions between the adjacent architectures (ribbons or sheets). Energy framework calculations are used for estimating the bending ability of the three compounds, with the three following the order Cl ≪ Br < I. The iterative electrostatic scheme coupled with the supermolecule approach (SM) at the DFT/CAM-B3LYP/aug-cc-pVTZ level is used to calculate the third-order nonlinear susceptibility (χ3) values in a simulated crystalline environment for the static case as well as two typical electric field frequency values, (λ = 1064 nm) and (λ = 532 nm). In addition, estimates of the topological studies (localized orbital locator and electron localization function) and reactivity characteristics (global reactivity parameters, molecular electrostatic potential, and Fukui function) are made for the compounds under investigation. Docking studies done using AutoDock software with a protein target (PDB ID: 6CM4) revealed that three compounds could be used to treat Alzheimer's disease.
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Affiliation(s)
- Krishna Murthy Potla
- Department of Chemistry, Velagapudi Ramakrishna Siddhartha Engineering College (Autonomous), Kanuru 520 007, Vijayawada, Andhra Pradesh, India
| | - Suchetan Parameshwar Adimule
- Department of Studies and Research in Chemistry, University College of Science, Tumkur University, Tumkur 572 103, Karnataka, India
| | - Nuthalapati Poojith
- Department of Pharmacology, Sri Ramachandra Institute of Higher Education and Research, Ramachandra Nagar, Porur, Chennai 600 116, India.
| | - Francisco A P Osório
- Instituto de Física, Universidade Federal de Goias, 74690-900 Goiânia, GO, Brazil; Pontifícia Universida de Católica de Goiás, 74605-100 Goiânia, GO, Brazil
| | - Clodoaldo Valverde
- Laboratório de Modelagem Molecular Aplicada e Simulação (LaMMAS), Campus de CiênciasExatas e Tecnológicas, UniversidadeEstadual de Goiás, 75001-970 Anápolis, GO, Brazil; Universidade Paulista, 74845-090 Goiânia, GO, Brazil
| | | | - Suneetha Vankayalapati
- Department of Chemistry, Velagapudi Ramakrishna Siddhartha Engineering College (Autonomous), Kanuru 520 007, Vijayawada, Andhra Pradesh, India
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Blanco-Acuña EF, Vázquez-López LA, Gasque L, García-Ortega H. AIEgens-NLOphores coumarin-triphenylamine chalcone derivatives: Synthesis, photophysical properties and DFT computational study. J Mol Struct 2023. [DOI: 10.1016/j.molstruc.2022.134009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/15/2022]
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Wong QA, Quah CK, Wong XA, Maidur SR, Kwong HC, Win YF, Patil PS, Gummagol NB. Structure-Property Relationship of Three 2-Chloro-4-fluoro Chalcone Derivatives: A Comprehensive Study on Linear and Non-linear Optical Properties, Structural Characterizations and Density Functional Theory. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133584] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]
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Elzupir A, Ibnaouf K. Synthesis of novel pyrrolidinyl chalcone derivatives: Spectral properties, energy band-gap tailoring, and amplified spontaneous emission. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.131698] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Almeida-Neto FWQ, da Silva LP, Ferreira MKA, Mendes FRS, de Castro KK, Bandeira PN, de Menezes JES, dos Santos HS, Monteiro NK, Marinho ES, de Lima-Neto P. Characterization of the structural, spectroscopic, nonlinear optical, electronic properties and antioxidant activity of the N-{4’-[(E)-3-(Fluorophenyl)-1-(phenyl)-prop-2-en-1-one]}-acetamide. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2020.128765] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
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Borges ID, Danielli JAV, Silva VEG, Sallum LO, Queiroz JE, Dias LD, Iermak I, Aquino GLB, Camargo AJ, Valverde C, Osório FAP, Baseia B, Napolitano HB. Synthesis and structural studies on ( E)-3-(2,6-difluorophenyl)-1-(4-fluorophenyl)prop-2-en-1-one: a promising nonlinear optical material. RSC Adv 2020; 10:22542-22555. [PMID: 35514582 PMCID: PMC9054580 DOI: 10.1039/d0ra03634j] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2020] [Accepted: 05/28/2020] [Indexed: 11/25/2022] Open
Abstract
A new fluorinated chalcone (E)-3-(2,6-difluorophenyl)-1-(4-fluorophenyl)prop-2-en-1-one was synthesized in 90% yield and crystallized by a slow evaporation technique. Its full structural characterization and purity were determined by scanning electron microscopy, infrared spectroscopy, gas chromatography-mass spectrometry, 1H, 13C and 19F nuclear magnetic resonance, thermal gravimetric analysis (TGA), differential scanning calorimetry (DSC), Raman microspectroscopy, UV-Vis absorption spectroscopy, single crystal X-ray diffraction (XRD) and Hirshfeld surface (HS) analysis. The fluorinated chalcone crystallized in centrosymmetric space group P21/c stabilized by the C-H⋯O and C-H⋯F interactions and the π⋯π contact. The crystalline environment was simulated through the supermolecule approach where a bulk with 378 000 atoms was built. The electric parameters were calculated at the DFT/CAM-B3LYP/6-311++G(d,p) level as function of the electric field frequency. The macroscopic parameters such as linear refractive index and third-order nonlinear susceptibility (χ (3)) were calculated, and the results were compared with experimental data obtained from the literature. The χ (3)-value for the chalcone crystal is 369.294 × 10-22 m2 V-2, higher than those obtained from a few similar types of molecule, showing that the chalcone crystal can be considered as a nonlinear optical material. Also, molecular theoretical calculations such as infrared spectrum assignments, frontier molecular orbital analysis and MEP were implemented, revealing that the most positive region is around the hydrogen atoms of the aromatic rings, and electrophilic attack occurs on the carbonyl group.
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Affiliation(s)
- I D Borges
- Laboratório de Novos Materiais, Centro Universitário de Anápolis 75083-515 Anápolis GO Brazil
| | - J A V Danielli
- Laboratório de Novos Materiais, Centro Universitário de Anápolis 75083-515 Anápolis GO Brazil
| | - V E G Silva
- Grupo de Química Teórica e Estrutural de Anápolis, Universidade Estadual de Goiás 75001-970 Anápolis GO Brazil
| | - L O Sallum
- Grupo de Química Teórica e Estrutural de Anápolis, Universidade Estadual de Goiás 75001-970 Anápolis GO Brazil
| | - J E Queiroz
- Grupo de Química Teórica e Estrutural de Anápolis, Universidade Estadual de Goiás 75001-970 Anápolis GO Brazil
| | - L D Dias
- São Carlos Institute of Physics, University of São Paulo 13566-590 São Carlos SP Brazil
| | - I Iermak
- São Carlos Institute of Physics, University of São Paulo 13566-590 São Carlos SP Brazil
| | - G L B Aquino
- Grupo de Química Teórica e Estrutural de Anápolis, Universidade Estadual de Goiás 75001-970 Anápolis GO Brazil
| | - A J Camargo
- Grupo de Química Teórica e Estrutural de Anápolis, Universidade Estadual de Goiás 75001-970 Anápolis GO Brazil
| | - C Valverde
- Grupo de Química Teórica e Estrutural de Anápolis, Universidade Estadual de Goiás 75001-970 Anápolis GO Brazil
- Laboratório de Modelagem Molecular Aplicada e Simulação, Universidade Paulista 74845-090 Goiânia GO Brazil
| | - F A P Osório
- Instituto de Física, Universidade Federal de Goiás 74.690-900 Goiânia GO Brazil
- Pontifícia Universidade Católica de Goiás 13566-590 Goiania GO Brazil
| | - B Baseia
- Instituto de Física, Universidade Federal de Goiás 74.690-900 Goiânia GO Brazil
- Departamento de Física, Universidade Federal da Paraíba 58051-970 João Pessoa PB Brazil
| | - H B Napolitano
- Laboratório de Novos Materiais, Centro Universitário de Anápolis 75083-515 Anápolis GO Brazil
- Grupo de Química Teórica e Estrutural de Anápolis, Universidade Estadual de Goiás 75001-970 Anápolis GO Brazil
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