1
|
Hui CY, Liu MQ, Guo Y. Synthetic bacteria designed using ars operons: a promising solution for arsenic biosensing and bioremediation. World J Microbiol Biotechnol 2024; 40:192. [PMID: 38709285 DOI: 10.1007/s11274-024-04001-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2024] [Accepted: 04/22/2024] [Indexed: 05/07/2024]
Abstract
The global concern over arsenic contamination in water due to its natural occurrence and human activities has led to the development of innovative solutions for its detection and remediation. Microbial metabolism and mobilization play crucial roles in the global cycle of arsenic. Many microbial arsenic-resistance systems, especially the ars operons, prevalent in bacterial plasmids and genomes, play vital roles in arsenic resistance and are utilized as templates for designing synthetic bacteria. This review novelty focuses on the use of these tailored bacteria, engineered with ars operons, for arsenic biosensing and bioremediation. We discuss the advantages and disadvantages of using synthetic bacteria in arsenic pollution treatment. We highlight the importance of genetic circuit design, reporter development, and chassis cell optimization to improve biosensors' performance. Bacterial arsenic resistances involving several processes, such as uptake, transformation, and methylation, engineered in customized bacteria have been summarized for arsenic bioaccumulation, detoxification, and biosorption. In this review, we present recent insights on the use of synthetic bacteria designed with ars operons for developing tailored bacteria for controlling arsenic pollution, offering a promising avenue for future research and application in environmental protection.
Collapse
Affiliation(s)
- Chang-Ye Hui
- Shenzhen Prevention and Treatment Center for Occupational Diseases, Shenzhen, China.
| | - Ming-Qi Liu
- Shenzhen Prevention and Treatment Center for Occupational Diseases, Shenzhen, China
- School of Public Health, Guangdong Medical University, Dongguan, China
| | - Yan Guo
- Shenzhen Prevention and Treatment Center for Occupational Diseases, Shenzhen, China
| |
Collapse
|
2
|
Mohsin H, Shafique M, Zaid M, Rehman Y. Microbial biochemical pathways of arsenic biotransformation and their application for bioremediation. Folia Microbiol (Praha) 2023:10.1007/s12223-023-01068-6. [PMID: 37326815 DOI: 10.1007/s12223-023-01068-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2022] [Accepted: 05/19/2023] [Indexed: 06/17/2023]
Abstract
Arsenic is a ubiquitous toxic metalloid, the concentration of which is beyond WHO safe drinking water standards in many areas of the world, owing to many natural and anthropogenic activities. Long-term exposure to arsenic proves lethal for plants, humans, animals, and even microbial communities in the environment. Various sustainable strategies have been developed to mitigate the harmful effects of arsenic which include several chemical and physical methods, however, bioremediation has proved to be an eco-friendly and inexpensive technique with promising results. Many microbes and plant species are known for arsenic biotransformation and detoxification. Arsenic bioremediation involves different pathways such as uptake, accumulation, reduction, oxidation, methylation, and demethylation. Each of these pathways has a certain set of genes and proteins to carry out the mechanism of arsenic biotransformation. Based on these mechanisms, various studies have been conducted for arsenic detoxification and removal. Genes specific for these pathways have also been cloned in several microorganisms to enhance arsenic bioremediation. This review discusses different biochemical pathways and the associated genes which play important roles in arsenic redox reactions, resistance, methylation/demethylation, and accumulation. Based on these mechanisms, new methods can be developed for effective arsenic bioremediation.
Collapse
Affiliation(s)
- Hareem Mohsin
- Department of Life Sciences, School of Science, University of Management and Technology, Lahore, Pakistan
| | - Maria Shafique
- Institute of Microbiology and Molecular Genetics, University of the Punjab, Quaid-e-Azam Campus, Lahore, Pakistan
| | - Muhammad Zaid
- Department of Life Sciences, School of Science, University of Management and Technology, Lahore, Pakistan
| | - Yasir Rehman
- Department of Life Sciences, School of Science, University of Management and Technology, Lahore, Pakistan.
| |
Collapse
|
3
|
Himi E, Miyoshi-Akiyama T, Matsushima Y, Shiono I, Aragane S, Hirano Y, Ikeda G, Kitaura Y, Kobayashi K, Konno D, Morohashi A, Noguchi Y, Ominato Y, Shinbo S, Suzuki N, Takatsuka K, Tashiro H, Yamada Y, Yamashita K, Yoshino N, Kitashima M, Kotani S, Inoue K, Hino A, Hosoya H. Establishment of an unfed strain of Paramecium bursaria and analysis of associated bacterial communities controlling its proliferation. Front Microbiol 2023; 14:1036372. [PMID: 36960277 PMCID: PMC10029143 DOI: 10.3389/fmicb.2023.1036372] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2022] [Accepted: 01/27/2023] [Indexed: 03/09/2023] Open
Abstract
The ciliate Paramecium bursaria harbors several hundred symbiotic algae in its cell and is widely used as an experimental model for studying symbiosis between eukaryotic cells. Currently, various types of bacteria and eukaryotic microorganisms are used as food for culturing P. bursaria; thus, the cultivation conditions are not uniform among researchers. To unify cultivation conditions, we established cloned, unfed strains that can be cultured using only sterile medium without exogenous food. The proliferation of these unfed strains was suppressed in the presence of antibiotics, suggesting that bacteria are required for the proliferation of the unfed strains. Indeed, several kinds of bacteria, such as Burkholderiales, Rhizobiales, Rhodospirillales, and Sphingomonadales, which are able to fix atmospheric nitrogen and/or degrade chemical pollutants, were detected in the unfed strains. The genetic background of the individually cloned, unfed strains were the same, but the proliferation curves of the individual P. bursaria strains were very diverse. Therefore, we selected multiple actively and poorly proliferating individual strains and compared the bacterial composition among the individual strains using 16S rDNA sequencing. The results showed that the bacterial composition among actively proliferating P. bursaria strains was highly homologous but different to poorly proliferating strains. Using unfed strains, the cultivation conditions applied in different laboratories can be unified, and symbiosis research on P. bursaria will make great progress.
Collapse
Affiliation(s)
- Eiko Himi
- Faculty of Agriculture, Kibi International University, Minamiawaji, Hyogo, Japan
| | - Tohru Miyoshi-Akiyama
- Department of Infectious Diseases, Research Institute, National Center for Global Health and Medicine, Tokyo, Japan
| | - Yuri Matsushima
- Department of Biological Sciences, Graduate School of Science, Kanagawa University, Kanagawa, Japan
| | - Iru Shiono
- Department of Biological Sciences, Faculty of Science, Kanagawa University, Kanagawa, Japan
| | - Seiji Aragane
- Department of Biological Sciences, Faculty of Science, Kanagawa University, Kanagawa, Japan
| | - Yui Hirano
- Department of Biological Sciences, Faculty of Science, Kanagawa University, Kanagawa, Japan
| | - Gaku Ikeda
- Department of Biological Sciences, Faculty of Science, Kanagawa University, Kanagawa, Japan
| | - Yuki Kitaura
- Department of Biological Sciences, Faculty of Science, Kanagawa University, Kanagawa, Japan
| | - Kyohei Kobayashi
- Department of Biological Sciences, Faculty of Science, Kanagawa University, Kanagawa, Japan
| | - Daichi Konno
- Department of Biological Sciences, Faculty of Science, Kanagawa University, Kanagawa, Japan
| | - Ayata Morohashi
- Department of Biological Sciences, Faculty of Science, Kanagawa University, Kanagawa, Japan
| | - Yui Noguchi
- Department of Biological Sciences, Faculty of Science, Kanagawa University, Kanagawa, Japan
| | - Yuka Ominato
- Department of Biological Sciences, Faculty of Science, Kanagawa University, Kanagawa, Japan
| | - Soma Shinbo
- Department of Biological Sciences, Faculty of Science, Kanagawa University, Kanagawa, Japan
| | - Naruya Suzuki
- Department of Biological Sciences, Faculty of Science, Kanagawa University, Kanagawa, Japan
| | - Kurama Takatsuka
- Department of Biological Sciences, Faculty of Science, Kanagawa University, Kanagawa, Japan
| | - Hitomi Tashiro
- Department of Biological Sciences, Faculty of Science, Kanagawa University, Kanagawa, Japan
| | - Yoki Yamada
- Department of Biological Sciences, Faculty of Science, Kanagawa University, Kanagawa, Japan
| | - Kenya Yamashita
- Department of Biological Sciences, Faculty of Science, Kanagawa University, Kanagawa, Japan
| | - Natsumi Yoshino
- Department of Biological Sciences, Faculty of Science, Kanagawa University, Kanagawa, Japan
| | - Masaharu Kitashima
- Department of Biological Sciences, Faculty of Science, Kanagawa University, Kanagawa, Japan
| | - Susumu Kotani
- Department of Biological Sciences, Graduate School of Science, Kanagawa University, Kanagawa, Japan
- Department of Biological Sciences, Faculty of Science, Kanagawa University, Kanagawa, Japan
- Research Institute for Integrated Science, Kanagawa University, Kanagawa, Japan
| | - Kazuhito Inoue
- Department of Biological Sciences, Graduate School of Science, Kanagawa University, Kanagawa, Japan
- Department of Biological Sciences, Faculty of Science, Kanagawa University, Kanagawa, Japan
- Research Institute for Integrated Science, Kanagawa University, Kanagawa, Japan
| | - Akiya Hino
- Research Institute for Integrated Science, Kanagawa University, Kanagawa, Japan
| | - Hiroshi Hosoya
- Research Institute for Integrated Science, Kanagawa University, Kanagawa, Japan
- *Correspondence: Hiroshi Hosoya, ;
| |
Collapse
|
4
|
Bacterial Arsenic Metabolism and Its Role in Arsenic Bioremediation. Curr Microbiol 2022; 79:131. [PMID: 35290506 DOI: 10.1007/s00284-022-02810-y] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2021] [Accepted: 02/14/2022] [Indexed: 11/03/2022]
Abstract
Arsenic contaminations, often adversely influencing the living organisms, including plants, animals, and the microbial communities, are of grave apprehension. Many physical, chemical, and biological techniques are now being explored to minimize the adverse affects of arsenic toxicity. Bioremediation of arsenic species using arsenic loving bacteria has drawn much attention. Arsenate and arsenite are mostly uptaken by bacteria through aquaglycoporins and phosphate transporters. After entering arsenic inside bacterial cell arsenic get metabolized (e.g., reduction, oxidation, methylation, etc.) into different forms. Arsenite is sequentially methylated into monomethyl arsenic acid (MMA) and dimethyl arsenic acid (DMA), followed by a transformation of less toxic, volatile trimethyl arsenic acid (TMA). Passive remediation techniques, including adsorption, biomineralization, bioaccumulation, bioleaching, and so on are exploited by bacteria. Rhizospheric bacterial association with some specific plants enhances phytoextraction process. Arsenic-resistant rhizospheric bacteria have immense role in enhancement of crop plant growth and development, but their applications are not well studied till date. Emerging techniques like phytosuction separation (PS-S) have a promising future, but still light to be focused on these techniques. Plant-associated bioremediation processes like phytoextraction and phytosuction separation (PS-S) techniques might be modified by treating with potent bacteria for furtherance.
Collapse
|
5
|
Li F, Yu H, Li Y, Wang Y, Shen Resource J, Hu D, Feng B, Han Y. The quality of compost was improved by low concentrations of fulvic acid owing to its optimization of the exceptional microbial structure. BIORESOURCE TECHNOLOGY 2021; 342:125843. [PMID: 34530250 DOI: 10.1016/j.biortech.2021.125843] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2021] [Revised: 08/19/2021] [Accepted: 08/21/2021] [Indexed: 06/13/2023]
Abstract
The influence of different concentrations of fulvic acid at 0, 100, 200, and 400 mg/kg was evaluated during the course of composting with straw and mushroom residues as substrates. The optimal concentration of fulvic acid is 100 mg/Kg based on microbial characteristics, chemical parameters, and germination index testing. Nearly 80% of the microbial taxa responded significantly to fulvic acid over the composting period, with a dynamic change of the co-occurrence network from complex to simple and then to complex. Fulvic acid accelerated the progress of composting and reduced the emission of gases at the thermophilic phase. The optimal concentration of fulvic acid enriched the beneficial microorganisms Aeribacillus, Oceanobacillus, and Rhodospirillaceae, and decreased the abundances of pathogenic microorganisms Corynebacterium, Elizabethkingia, and Sarcocystidae. This study indicates a new strategy to optimize the composting process using the biostimulant fulvic acid.
Collapse
Affiliation(s)
- Fang Li
- College of Resources and Environment Science, Henan Agricultural University, Zhengzhou 450002, PR China
| | - Haiyou Yu
- Henan University of Animal Husbandry and Economy, Zhengzhou 450002, PR China
| | - Yue Li
- College of Resources and Environment Science, Henan Agricultural University, Zhengzhou 450002, PR China
| | - Yi Wang
- College of Resources and Environment Science, Henan Agricultural University, Zhengzhou 450002, PR China
| | - Jinwen Shen Resource
- College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, PR China
| | - Desheng Hu
- College of Resources and Environment Science, Henan Agricultural University, Zhengzhou 450002, PR China
| | - Biao Feng
- College of Resources and Environment Science, Henan Agricultural University, Zhengzhou 450002, PR China
| | - Yanlai Han
- College of Resources and Environment Science, Henan Agricultural University, Zhengzhou 450002, PR China.
| |
Collapse
|