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For: Jiao S, Zou Q. Identification of plant vacuole proteins by exploiting deep representation learning features. Comput Struct Biotechnol J 2022;20:2921-2927. [PMID: 35765653 PMCID: PMC9207291 DOI: 10.1016/j.csbj.2022.06.002] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2022] [Revised: 05/30/2022] [Accepted: 06/01/2022] [Indexed: 12/04/2022]  Open
Number Cited by Other Article(s)
1
Xiao C, Zhou Z, She J, Yin J, Cui F, Zhang Z. PEL-PVP: Application of plant vacuolar protein discriminator based on PEFT ESM-2 and bilayer LSTM in an unbalanced dataset. Int J Biol Macromol 2024;277:134317. [PMID: 39094861 DOI: 10.1016/j.ijbiomac.2024.134317] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2024] [Revised: 07/10/2024] [Accepted: 07/28/2024] [Indexed: 08/04/2024]
2
Lin L, Long Y, Liu J, Deng D, Yuan Y, Liu L, Tan B, Qi H. FRP-XGBoost: Identification of ferroptosis-related proteins based on multi-view features. Int J Biol Macromol 2024;262:130180. [PMID: 38360239 DOI: 10.1016/j.ijbiomac.2024.130180] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2023] [Revised: 02/11/2024] [Accepted: 02/12/2024] [Indexed: 02/17/2024]
3
Fu X, Yuan Y, Qiu H, Suo H, Song Y, Li A, Zhang Y, Xiao C, Li Y, Dou L, Zhang Z, Cui F. AGF-PPIS: A protein-protein interaction site predictor based on an attention mechanism and graph convolutional networks. Methods 2024;222:142-151. [PMID: 38242383 DOI: 10.1016/j.ymeth.2024.01.006] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2023] [Revised: 01/04/2024] [Accepted: 01/13/2024] [Indexed: 01/21/2024]  Open
4
Sui J, Chen J, Chen Y, Iwamori N, Sun J. Identification of plant vacuole proteins by using graph neural network and contact maps. BMC Bioinformatics 2023;24:357. [PMID: 37740195 PMCID: PMC10517492 DOI: 10.1186/s12859-023-05475-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2023] [Accepted: 09/12/2023] [Indexed: 09/24/2023]  Open
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