Human evolution: new playgrounds for natural selection

Of genes and microbes: solving the intricacies in host genomes

Microbiome research is a quickly developing field in biomedical research, and we have witnessed its potential in understanding the physiology, metabolism and immunology, its critical role in understanding the health and disease of the host, and its vast capacity in disease prediction, intervention and treatment. However, many of the fundamental questions still need to be addressed, including the shaping forces of microbial diversity between individuals and across time. Microbiome research falls into the classical nature vs. nurture scenario, such that host genetics shape part of the microbiome, while environmental influences change the original course of microbiome development. In this review, we focus on the nature, i.e., the genetic part of the equation, and summarize the recent efforts in understanding which parts of the genome, especially the human and mouse genome, play important roles in determining the composition and functions of microbial communities, primarily in the gut but also on the skin. We aim to present an overview of different approaches in studying the intricate relationships between host genetic variations and microbes, its underlying philosophy and methodology, and we aim to highlight a few key discoveries along this exploration, as well as current pitfalls. More evidence and results will surely appear in upcoming studies, and the accumulating knowledge will lead to a deeper understanding of what we could finally term a "hologenome", that is, the organized, closely interacting genome of the host and the microbiome.

GEOSPATIAL ASSESSMENT BASED ON FERTILITY AND MORTALITY DIFFERENTIAL INDICES OF NATURAL SELECTION IN NORTH-WEST AND EASTERN HIMALAYAN POPULATIONS

There is contradictory evidence of having fewer live births and higher embryonic mortality among high-altitude populations than their counterparts at lower altitude. This study explores the geospatial differences in selection intensities among human populations living in different ecological settings. Reproductive data from post-menopausal women were collected from 75 women from near Shimla, Himachal Pradesh, at an altitude of 2150 m above sea level and 100 women from Jind, Haryana, at an altitude of 227 m. Secondary data were taken from 85 women from the Kinnaur district of Himachal Pradesh at an average altitude of 3420 m. A comparison of the study data was made with similar data from different populations living in the western and eastern Himalayas. The total selection intensity index based on Johnston and Kensinger's index was highest in Shimla and lowest in Kinnaur. The fertility selection component was highest in Shimla and lowest in Kinnaur. The prenatal mortality contribution to the total selection was highest in Shimla (30.76%) and lowest in Kinnaur (2.14%), while the contributions of normalized postnatal mortality were 16.39% and 57.80% in Shimla and Kinnaur, respectively. The fertility component of selection was higher than the mortality component in Shimla, while in the other two places the reverse was observed. Hypoxic conditions at high altitude seem to have little effect on the fertility and embryonic mortality rates of indigenous people. The geospatial differences in the selection intensities may be due to differences in ethnic, behavioural ecology, environmental, cultural and socioeconomic factors.

Genetics, lifestyle and longevity: Lessons from centenarians

Longevity as a complex life-history trait shares an ontogenetic relationship with other quantitative traits and varies among individuals, families and populations. Heritability estimates of longevity suggest that about a third of the phenotypic variation associated with the trait is attributable to genetic factors, and the rest is influenced by epigenetic and environmental factors. Individuals react differently to the environments that they are a part of, as well as to the environments they construct for their survival and reproduction; the latter phenomenon is known as niche construction. Lifestyle influences longevity at all the stages of development and levels of human diversity. Hence, lifestyle may be viewed as a component of niche construction. Here, we: a) interpret longevity using a combination of genotype-epigenetic-phenotype (GEP) map approach and niche-construction theory, and b) discuss the plausible influence of genetic and epigenetic factors in the distribution and maintenance of longevity among individuals with normal life span on the one hand, and centenarians on the other. Although similar genetic and environmental factors appear to be common to both of these groups, exceptional longevity may be influenced by polymorphisms in specific genes, coupled with superior genomic stability and homeostatic mechanisms, maintained by negative frequency-dependent selection. We suggest that a comparative analysis of longevity between individuals with normal life span and centenarians, along with insights from population ecology and evolutionary biology, would not only advance our knowledge of biological mechanisms underlying human longevity, but also provide deeper insights into extending healthy life span.

Opportunity for selection in human health

Natural selection defined by differential survival and reproduction of individuals in populations is influenced by genetic, developmental, and environmental factors operating at every age and stage in human life history: generation of gametes, conception, birth, maturation, reproduction, senescence, and death. Biological systems are built upon a hierarchical organization nesting subcellular organelles, cells, tissues, and organs within individuals, individuals within families, and families within populations, and the latter among other populations. Natural selection often acts simultaneously at more than one level of biological organization and on specific traits, which we define as multilevel selection. Under this model, the individual is a fundamental unit of biological organization and also of selection, imbedded in a larger evolutionary context, just as it is a unit of medical intervention imbedded in larger biological, cultural, and environmental contexts. Here, we view human health and life span as necessary consequences of natural selection, operating at all levels and phases of biological hierarchy in human life history as well as in sociological and environmental milieu. An understanding of the spectrum of opportunities for natural selection will help us develop novel approaches to improving healthy life span through specific and global interventions that simultaneously focus on multiple levels of biological organization. Indeed, many opportunities exist to apply multilevel selection models employed in evolutionary biology and biodemography to improving human health at all hierarchical levels. Multilevel selection perspective provides a rational theoretical foundation for a synthesis of medicine and evolution that could lead to discovering effective predictive, preventive, palliative, potentially curative, and individualized approaches in medicine and in global health programs.