De novo innovation allows shark parasitism and global expansion of the barnacle Anelasma squalicola

Unravelling the trophic interaction between a parasitic barnacle (Anelasma squalicola) and its host Southern lanternshark (Etmopterus granulosus) using stable isotopes

The parasitic barnacle, Anelasma squalicola, is a rare and evolutionary fascinating organism. Unlike most other filter-feeding barnacles, A. squalicola has evolved the capability to uptake nutrient from its host, exclusively parasitizing deepwater sharks of the families Etmopteridae and Pentanchidae. The physiological mechanisms involved in the uptake of nutrients from its host are not yet known. Using stable isotopes and elemental compositions, we followed the fate of nitrogen, carbon and sulphur through various tissues of A. squalicola and its host, the Southern lanternshark Etmopterus granulosus, to better understand the trophic relationship between parasite and host. Like most marine parasites, A. squalicola is lipid-rich and clear differences were found in the stable isotope ratios between barnacle organs. It is evident that the deployment of a system of ‘rootlets’, which merge with host tissues, allows A. squalicola to draw nutrients from its host. Through this system, proteins are then rerouted to the exterior structural tissues of A. squalicola while lipids are used for maintenance and egg synthesis. The nutrient requirement of A. squalicola was found to change from protein-rich to lipid-rich between its early development stage and its definitive size.

Genomic Characterization of the Barnacle Balanus improvisus Reveals Extreme Nucleotide Diversity in Coding Regions

Barnacles are key marine crustaceans in several habitats, and they constitute a common practical problem by causing biofouling on man-made marine constructions and ships. Despite causing considerable ecological and economic impacts, there is a surprising void of basic genomic knowledge, and a barnacle reference genome is lacking. We here set out to characterize the genome of the bay barnacle Balanus improvisus (= Amphibalanus improvisus) based on short-read whole-genome sequencing and experimental genome size estimation. We show both experimentally (DNA staining and flow cytometry) and computationally (k-mer analysis) that B. improvisus has a haploid genome size of ~ 740 Mbp. A pilot genome assembly rendered a total assembly size of ~ 600 Mbp and was highly fragmented with an N50 of only 2.2 kbp. Further assembly-based and assembly-free analyses revealed that the very limited assembly contiguity is due to the B. improvisus genome having an extremely high nucleotide diversity (π) in coding regions (average π ≈ 5% and average π in fourfold degenerate sites ≈ 20%), and an overall high repeat content (at least 40%). We also report on high variation in the α-octopamine receptor OctA (average π = 3.6%), which might increase the risk that barnacle populations evolve resistance toward antifouling agents. The genomic features described here can help in planning for a future high-quality reference genome, which is urgently needed to properly explore and understand proteins of interest in barnacle biology and marine biotechnology and for developing better antifouling strategies.

A Global Synthesis of the Correspondence Between Epizoic Barnacles and Their Sea Turtle Hosts

Barnacles that are obligate epizoites of sea turtles are not parasites in the traditional sense. However, they can impair their hosts in some instances, disqualifying the association as strictly commensal. Characterizing these interactions requires knowing which epibionts pair with which hosts, but records of barnacles from sea turtles are scattered and symbiont/host match-ups remain equivocal. The objective of this study was to collate global records on the occurrence of barnacles with sea turtles and describe each species pair quantitatively. Records reporting barnacles with sea turtles were searched spanning the last 167 years, including grey literature, and findings were enumerated for 30,580 individual turtles to evaluate prevalence. The data were summarized globally as well as subdivided across six geographic regions to assess constancy of the affiliations. Patterns of partnering were visualized by hierarchical clustering analysis of percent occurrence values for each barnacle/turtle pair and the relative selectivity of each symbiont and susceptibility of each host were evaluated. After adjusting for synonymies and taxonomic inaccuracies, the occurrence of 16 nominal species of barnacles was recorded from all 7 extant sea turtle species. Mostly, barnacles were not specific to single turtle species, partnering on average with three hosts each. Neither were barnacles entirely host-consistent among regions. Three barnacles were common to all sea turtles except leatherbacks. The most common, widespread, and least selective barnacle was Chelonibia testudinaria, the only symbiont of all turtles. Excluding single-record occurrences, the barnacle Stomatolepas transversa was the only single-host associate of any hard-shell sea turtle (the green sea turtle) and Platylepas coriacea and Stomatolepas dermochelys were exclusive associates of leatherback sea turtles. Green sea turtles were the most vulnerable to epibiosis, hosting 13 barnacle species and Kemp’s ridley sea turtles were the least, hosting three. Geographically, there was an average of nine barnacle species per world region, with diversity highest in the Pacific Ocean (12 species) and lowest in the Mediterranean Sea (6 species). It is paradoxical that the flexibility of barnacles for multiple host species contrasts with their overall strict specificity for sea turtles, with each symbiont occupying a virtually unique suite of turtle hosts.

Intraspecific dental variations in the deep-sea shark Etmopterus spinax and their significance in the fossil record

An important character on several taxonomic levels for shark identification is the tooth morphology. Sharks show a variety of highly specialized dentitions reflecting adaptations to their feeding habits. Intraspecific variation of tooth morphology such as sexual or ontogenetic dimorphism is poorly known in many species, even though tooth morphology plays a decisive role in the characterization of the fossil record of sharks, which comprises mostly fossil teeth. Here we analyzed the dentition of 40 jaws of the Velvet Belly Lantern Shark Etmopterus spinax and identified ontogenetic and sexual dimorphic characters such as total number of teeth, number of upper teeth, cusplet numbers in upper jaw teeth and width of lower jaw teeth. Dimorphic characters may reduce intraspecific competition for food, as E. spinax segregates by sex and size and may allow for identifying the male sex. The lower jaw tooth height, a sexually non-dimorphic character, was used to re-calculate the total length of specimens, which represents the first such approach for a squaliform shark. Results derived from the extant E. spinax are subsequently applied to fossil Etmopterus sp. teeth (Miocene) to gain individual information such as sex or size, but also characterize the extinct population from the excavation site by a size distribution profile in comparison to data from extant populations. This approach indicates the presence of multiple ontogenetic stages in the extinct population.

From extraocular photoreception to pigment movement regulation: a new control mechanism of the lanternshark luminescence

The velvet belly lanternshark, Etmopterus spinax, uses counterillumination to disappear in the surrounding blue light of its marine environment. This shark displays hormonally controlled bioluminescence in which melatonin (MT) and prolactin (PRL) trigger light emission, while α-melanocyte-stimulating hormone (α-MSH) and adrenocorticotropic hormone (ACTH) play an inhibitory role. The extraocular encephalopsin (Es-Opn3) was also hypothesized to act as a luminescence regulator. The majority of these compounds (MT, α-MSH, ACTH, opsin) are members of the rapid physiological colour change that regulates the pigment motion within chromatophores in metazoans. Interestingly, the lanternshark photophore comprises a specific iris-like structure (ILS), partially composed of melanophore-like cells, serving as a photophore shutter. Here, we investigated the role of (i) Es-Opn3 and (ii) actors involved in both MT and α-MSH/ACTH pathways on the shark bioluminescence and ILS cell pigment motions. Our results reveal the implication of Es-Opn3, MT, inositol triphosphate (IP₃), intracellular calcium, calcium-dependent calmodulin and dynein in the ILS cell pigment aggregation. Conversely, our results highlighted the implication of the α-MSH/ACTH pathway, involving kinesin, in the dispersion of the ILS cell pigment. The lanternshark luminescence then appears to be controlled by the balanced bidirectional motion of ILS cell pigments within the photophore. This suggests a functional link between photoreception and photoemission in the photogenic tissue of lanternsharks and gives precious insights into the bioluminescence control of these organisms.