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Wu NC, Alton L, Bovo RP, Carey N, Currie SE, Lighton JRB, McKechnie AE, Pottier P, Rossi G, White CR, Levesque DL. Reporting guidelines for terrestrial respirometry: Building openness, transparency of metabolic rate and evaporative water loss data. Comp Biochem Physiol A Mol Integr Physiol 2024; 296:111688. [PMID: 38944270 DOI: 10.1016/j.cbpa.2024.111688] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2024] [Revised: 06/24/2024] [Accepted: 06/25/2024] [Indexed: 07/01/2024]
Abstract
Respirometry is an important tool for understanding whole-animal energy and water balance in relation to the environment. Consequently, the growing number of studies using respirometry over the last decade warrants reliable reporting and data sharing for effective dissemination and research synthesis. We provide a checklist guideline on five key sections to facilitate the transparency, reproducibility, and replicability of respirometry studies: 1) materials, set up, plumbing, 2) subject conditions/maintenance, 3) measurement conditions, 4) data processing, and 5) data reporting and statistics, each with explanations and example studies. Transparency in reporting and data availability has benefits on multiple fronts. Authors can use this checklist to design and report on their study, and reviewers and editors can use the checklist to assess the reporting quality of the manuscripts they review. Improved standards for reporting will enhance the value of primary studies and will greatly facilitate the ability to carry out higher quality research syntheses to address ecological and evolutionary theories.
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Affiliation(s)
- Nicholas C Wu
- Hawkesbury Institute for the Environment, Western Sydney University, New South Wales 2753, Australia.
| | - Lesley Alton
- Centre for Geometric Biology, School of Biological Sciences, Monash University, Melbourne, VIC 3800, Australia. https://twitter.com/lesley_alton
| | - Rafael P Bovo
- Department of Evolution, Ecology, and Organismal Biology, University of California Riverside, Riverside, CA, United States. https://twitter.com/bovo_rp
| | - Nicholas Carey
- Marine Directorate for the Scottish Government, Aberdeen, United Kingdom
| | - Shannon E Currie
- Institute for Cell and Systems Biology, University of Hamburg, Martin-Luther-King Plz 3, 20146 Hamburg, Germany; School of Biosciences, University of Melbourne, Victoria, Australia. https://twitter.com/batsinthbelfry
| | - John R B Lighton
- Sable Systems International, North Las Vegas, NV, United States. https://twitter.com/SableSys
| | - Andrew E McKechnie
- South African Research Chair in Conservation Physiology, South African National Biodiversity Institute, South Africa; DSI-NRF Centre of Excellence at the FitzPatrick Institute, Department of Zoology and Entomology, University of Pretoria, South Africa
| | - Patrice Pottier
- Evolution & Ecology Research Centre, School of Biological, Earth and Environmental Sciences, The University of New South Wales, Sydney, New South Wales, Australia; Division of Ecology and Evolution, Research School of Biology, The Australian National University, Canberra, Australian Capital Territory, Australia. https://twitter.com/PatriceEcoEvo
| | - Giulia Rossi
- Department of Biology, McMaster University, Hamilton, Ontario, Canada. https://twitter.com/giuliasrossi
| | - Craig R White
- Centre for Geometric Biology, School of Biological Sciences, Monash University, Melbourne, VIC 3800, Australia
| | - Danielle L Levesque
- School of Biology and Ecology, University of Maine, Orono, ME, United States. https://twitter.com/dl_levesque
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Boja ES, Guidry Auvil JM. Shooting the moon: the National Cancer Institute's implementation framework for data sharing policies. Nat Med 2024; 30:2117-2120. [PMID: 38783140 DOI: 10.1038/s41591-024-02950-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/25/2024]
Affiliation(s)
- Emily S Boja
- Office of Data Sharing, Center for Biomedical Informatics and Information Technology, National Cancer Institute, National Institutes of Health, Rockville, MD, USA
| | - Jaime M Guidry Auvil
- Office of Data Sharing, Center for Biomedical Informatics and Information Technology, National Cancer Institute, National Institutes of Health, Rockville, MD, USA.
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Lagisz M, Rutkowska J, Aich U, Ross RM, Santana MS, Wang J, Trubanová N, Page MJ, Pua AAY, Yang Y, Amin B, Martinig AR, Barnett A, Surendran A, Zhang J, Borg DN, Elisee J, Wrightson JG, Nakagawa S. "Best Paper" awards lack transparency, inclusivity, and support for Open Science. PLoS Biol 2024; 22:e3002715. [PMID: 39042591 PMCID: PMC11265724 DOI: 10.1371/journal.pbio.3002715] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2024] [Accepted: 06/18/2024] [Indexed: 07/25/2024] Open
Abstract
Awards can propel academic careers. They also reflect the culture and values of the scientific community. But do awards incentivize greater transparency, inclusivity, and openness in science? Our cross-disciplinary survey of 222 awards for the "best" journal articles across all 27 SCImago subject areas revealed that journals and learned societies administering such awards generally publish little detail on their procedures and criteria. Award descriptions were brief, rarely including contact details or information on the nominations pool. Nominations of underrepresented groups were not explicitly encouraged, and concepts that align with Open Science were almost absent from the assessment criteria. At the same time, 10% of awards, especially the recently established ones, tended to use article-level impact metrics. USA-affiliated researchers dominated the winner's pool (48%), while researchers from the Global South were uncommon (11%). Sixty-one percent of individual winners were men. Overall, Best Paper awards miss the global calls for greater transparency and equitable access to academic recognition. We provide concrete and implementable recommendations for scientific awards to improve the scientific recognition system and incentives for better scientific practice.
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Affiliation(s)
- Malgorzata Lagisz
- Evolution & Ecology Research Centre and School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, Australia
- Theoretical Sciences Visiting Program, Okinawa Institute of Science and Technology Graduate University, Onna, Japan
| | - Joanna Rutkowska
- Institute of Environmental Sciences, Faculty of Biology, Jagiellonian University, Cracow, Poland
| | - Upama Aich
- School of Biological Sciences, Monash University, Clayton, Australia
| | - Robert M. Ross
- Department of Philosophy, Macquarie University, Sydney, Australia
| | - Manuela S. Santana
- Centre for Marine Studies, Federal University of Paraná, Pontal Do Paraná, PR, Brazil
| | - Joshua Wang
- School of Clinical Sciences, Queensland University of Technology, Brisbane, Australia
- Mandarin Training Centre, National Taiwan Normal University, Taipei, Taiwan
| | - Nina Trubanová
- School of Biology and Environmental Science, University College Dublin, Dublin, Ireland
| | - Matthew J. Page
- Methods in Evidence Synthesis Unit, School of Public Health and Preventive Medicine, Monash University, Melbourne, Australia
| | - Andrew Adrian Yu Pua
- School of Business, Economics, and Information Systems, University of Passau, Passau, Germany
| | - Yefeng Yang
- Evolution & Ecology Research Centre and School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, Australia
| | - Bawan Amin
- Faculty of Social and Behavioural Sciences, Utrecht University, Utrecht, the Netherlands
| | - April Robin Martinig
- Evolution & Ecology Research Centre and School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, Australia
| | - Adrian Barnett
- School of Public Health and Social Work, Queensland University of Technology, Brisbane, Australia
| | - Aswathi Surendran
- School of Psychology, University of Galway, University Road, Galway, Ireland
| | - Ju Zhang
- Department of Infectious Diseases and Public Health, Jockey Club College of Veterinary Medicine and Life Sciences, City University of Hong Kong, Hong Kong SAR, China
| | - David N. Borg
- School of Exercise and Nutrition Sciences, Queensland University of Technology, Brisbane, Australia
| | - Jafsia Elisee
- African Higher Institute of Open Science and Hardware, Yaoundé, Cameroon
| | | | - Shinichi Nakagawa
- Evolution & Ecology Research Centre and School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, Australia
- Theoretical Sciences Visiting Program, Okinawa Institute of Science and Technology Graduate University, Onna, Japan
- Department of Biological Sciences, University of Alberta, Biological Sciences Building, Edmonton, Canada
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Koivisto E, Mäntylä E. Are Open Science instructions targeted to ecologists and evolutionary biologists sufficient? A literature review of guidelines and journal data policies. Ecol Evol 2024; 14:e11698. [PMID: 38994214 PMCID: PMC11237169 DOI: 10.1002/ece3.11698] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2024] [Revised: 06/02/2024] [Accepted: 06/24/2024] [Indexed: 07/13/2024] Open
Abstract
Open science (OS) awareness and skills are increasingly becoming an essential part of everyday scientific work as e.g., many journals require authors to share data. However, following an OS workflow can seem challenging at first. Thus, instructions by journals and other guidelines are important. But how comprehensive are they in the field of ecology and evolutionary biology (Ecol Evol)? To find this out, we reviewed 20 published OS guideline articles aimed for ecologists or evolutionary biologists, together with the data policies of 17 Ecol Evol journals to chart the current landscape of OS guidelines in the field, find potential gaps, identify field-specific barriers for OS and discuss solutions to overcome these challenges. We found that many of the guideline articles covered similar topics, despite being written for a narrow field or specific target audience. Likewise, many of the guideline articles mentioned similar obstacles that could hinder or postpone a transition to open data sharing. Thus, there could be a need for a more widely known, general OS guideline for Ecol Evol. Following the same guideline could also enhance the uniformity of the OS practices carried on in the field. However, some topics, like long-term experiments and physical samples, were mentioned surprisingly seldom, although they are typical issues in Ecol Evol. Of the journals, 15 out of 17 expected or at least encouraged data sharing either for all articles or under specific conditions, e.g. for registered reports and 10 of those required data sharing at the submission phase. The coverage of journal data policies varied greatly between journals, from practically non-existing to very extensive. As journals can contribute greatly by leading the way and making open data useful, we recommend that the publishers and journals would invest in clear and comprehensive data policies and instructions for authors.
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Affiliation(s)
- Elina Koivisto
- Section of Ecology, Department of Biology University of Turku Turku Finland
- Present address: Federation of Finnish Learned Societies (TSV) Helsinki Finland
| | - Elina Mäntylä
- Section of Ecology, Department of Biology University of Turku Turku Finland
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Gilmour KM, Daley MA, Egginton S, Kelber A, McHenry MJ, Patek SN, Sane SP, Schulte PM, Terblanche JS, Wright PA, Franklin CE. Through the looking glass: attempting to predict future opportunities and challenges in experimental biology. J Exp Biol 2023; 226:jeb246921. [PMID: 38059428 DOI: 10.1242/jeb.246921] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/08/2023]
Abstract
To celebrate its centenary year, Journal of Experimental Biology (JEB) commissioned a collection of articles examining the past, present and future of experimental biology. This Commentary closes the collection by considering the important research opportunities and challenges that await us in the future. We expect that researchers will harness the power of technological advances, such as '-omics' and gene editing, to probe resistance and resilience to environmental change as well as other organismal responses. The capacity to handle large data sets will allow high-resolution data to be collected for individual animals and to understand population, species and community responses. The availability of large data sets will also place greater emphasis on approaches such as modeling and simulations. Finally, the increasing sophistication of biologgers will allow more comprehensive data to be collected for individual animals in the wild. Collectively, these approaches will provide an unprecedented understanding of 'how animals work' as well as keys to safeguarding animals at a time when anthropogenic activities are degrading the natural environment.
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Affiliation(s)
| | - Monica A Daley
- Department of Ecology and Evolutionary Biology, University of California, Irvine, Irvine, CA 92697, USA
| | - Stuart Egginton
- School of Biomedical Sciences, University of Leeds, Leeds LS2 9JT, UK
| | - Almut Kelber
- Department of Biology, Lund University, 22362 Lund, Sweden
| | - Matthew J McHenry
- Department of Ecology and Evolutionary Biology, University of California, Irvine, Irvine, CA 92697, USA
| | - Sheila N Patek
- Biology Department, Duke University, Durham, NC 27708, USA
| | - Sanjay P Sane
- National Centre for Biological Sciences, Tata Institute of Fundamental Research, GKVK Campus, Bellary Road, Bangalore, Karnataka 560065, India
| | - Patricia M Schulte
- Department of Zoology, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
| | - John S Terblanche
- Center for Invasion Biology, Department of Conservation Ecology & Entomology, Stellenbosch University, Stellenbosch 7602, South Africa
| | - Patricia A Wright
- Department of Integrative Biology, University of Guelph, Guelph, ON N1G 2W1, Canada
| | - Craig E Franklin
- School of the Environment, The University of Queensland, St. Lucia, Brisbane 4072, Australia
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