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Van Steenkiste G, Van Den Brulle I, Piepers S, De Vliegher S. In-Line Detection of Clinical Mastitis by Identifying Clots in Milk Using Images and a Neural Network Approach. Animals (Basel) 2023; 13:3783. [PMID: 38136819 PMCID: PMC10740463 DOI: 10.3390/ani13243783] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2023] [Revised: 11/30/2023] [Accepted: 12/06/2023] [Indexed: 12/24/2023] Open
Abstract
Automated milking systems (AMSs) already incorporate a variety of milk monitoring and sensing equipment, but the sensitivity, specificity, and positive predictive value of clinical mastitis (CM) detection remain low. A typical symptom of CM is the presence of clots in the milk during fore-stripping. The objective of this study was the development and evaluation of a deep learning model with image recognition capabilities, specifically a convolutional neural network (NN), capable of detecting such clots on pictures of the milk filter socks of the milking system, after the phase in which the first streams of milk have been discarded. In total, 696 pictures were taken with clots and 586 pictures without. These were randomly divided into 60/20/20 training, validation, and testing datasets, respectively, for the training and validation of the NN. A convolutional NN with residual connections was trained, and the hyperparameters were optimized based on the validation dataset using a genetic algorithm. The integrated gradients were calculated to explain the interpretation of the NN. The accuracy of the NN on the testing dataset was 100%. The integrated gradients showed that the NN identified the clots. Further field validation through integration into AMS is necessary, but the proposed deep learning method is very promising for the inline detection of CM on AMS farms.
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Affiliation(s)
- Glenn Van Steenkiste
- Department of Internal Medicine, Reproduction and Population Medicine, Faculty of Veterinary Medicine, Ghent University, 9820 Merelbeke, Belgium (S.P.); (S.D.V.)
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Lusis I, Antane V, Waldmann A. Indirect Sensing of Subclinical Intramammary Infections in Dairy Herds with a Milking Robot. SENSORS (BASEL, SWITZERLAND) 2023; 23:9036. [PMID: 38005424 PMCID: PMC10675450 DOI: 10.3390/s23229036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2023] [Revised: 10/29/2023] [Accepted: 11/06/2023] [Indexed: 11/26/2023]
Abstract
This study determined the impact of subclinical intramammary infections (IMIs), such as the major and minor udder pathogens (MaPs and MiPs), on the somatic cell count (SCC) in cow milk and investigated the possibilities of indirect sensing of the udder pathogens using the mastitis detection index (MDi) (DeLaval, Tumba, Sweden). The MDi incorporates quarter-level milk electrical conductivity, blood in milk, and milking interval. The case group (n = 21; MDi ≥ 1.4) was compared with the control group (n = 24; MDi < 1.4) for the presence of IMIs. The microbiological investigation of udder quarter foremilk samples was performed two times with an interval of 10 to 14 days. The case and control groups differed in terms of the occurrence of MaPs and MiPs in milk. During the continuous subclinical IMI and the episodic MaP infection, a higher SCC was detected compared with the episodic MiP infection or quarters without IMI. The novel finding of this study was that by using the milk quality sensor for the sensing of subclinical IMIs, there was an indication for the successful detection of episodic MaPs. However, the sensing of the continuous subclinical IMIs was not possible in the current study and still needs to be investigated.
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Affiliation(s)
- Ivars Lusis
- Faculty of Veterinary Medicine, Latvia University of Life Sciences and Technologies, Helmana 8, LV-3004 Jelgava, Latvia
| | - Vita Antane
- Faculty of Veterinary Medicine, Latvia University of Life Sciences and Technologies, Helmana 8, LV-3004 Jelgava, Latvia
| | - Andres Waldmann
- Faculty of Veterinary Medicine, Latvia University of Life Sciences and Technologies, Helmana 8, LV-3004 Jelgava, Latvia
- Institute of Veterinary Medicine and Animal Sciences, Estonian University of Life Sciences, Kreutzwaldi 62, 51006 Tartu, Estonia
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Marques TC, Lage CFA, Bruno DR, Fausak ED, Endres MI, Ferreira FC, Lima FS. Geographical trends for automatic milking systems research in non-pasture-based dairy farms: A scoping review. J Dairy Sci 2023; 106:7725-7736. [PMID: 37641343 DOI: 10.3168/jds.2023-23313] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2023] [Accepted: 05/26/2023] [Indexed: 08/31/2023]
Abstract
Automatic milking system (AMS) adoption in the United States is trending upward, with issues such as lower availability and increased cost of labor being factors frequently listed as motives for AMS implementation. In addition, more interest in precision dairy farming by the new generation of farmers may also help increase AMS adoption. The objective of this scoping review was to characterize the nature of the literature investigating non-pasture-based AMS and the opportunities and challenges for future research. The eligibility criteria included studies published in or after the year 2000, with full text in English, of at least 500 words, examining various outcomes related to AMS in non-pasture-based dairy farms. Six electronic databases were searched: Biosis (Web of Science), CAB Abstracts (CAB Direct), Medline (PubMed), PubAg, AGRIS (FAO), and Scopus (Elsevier). The review focused on studies with objectives, characteristics, farms, and AMS information. A total of 4,292 titles and abstracts were screened, and 536 studies were finally included. Most of the studies were conducted in Europe (73.5%), among commercial herds (67.9%), comprising Holstein cows (57.7%), using Lely and DeLaval brands (45.4% vs. 39.7%), with free-flow traffic (52.7%). The main research topics investigated were milk production, milk composition, and AMS efficiency, followed by behavior and welfare, health disorders (especially mastitis), and nutrition in Europe and other regions. At the same time, in the United States, trends were similar, except for nutrition. Since 2016, there has been an increased interest in studies on energy and water consumption, technological development, environment (enteric emissions), reproduction, genetics, and longevity or culling. However, the small number of studies and unclear characterization of what is optimum for reproductive management, other health disorders, economics, and water and energy consumption suggest a need for future research.
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Affiliation(s)
- T C Marques
- Department of Population Health and Reproduction, University of California, Davis, CA 95616
| | - C F A Lage
- Cornell Cooperative Extension, Cornell University, Bath, NY 14810
| | - D R Bruno
- Cooperative Extension, University of California Agriculture and Natural Resources, Fresno, CA 93701
| | - E D Fausak
- Carlson Health Sciences Library, University of California, Davis, CA 95616
| | - M I Endres
- Department of Animal Science, University of Minnesota, Saint Paul, MN 55108
| | - F C Ferreira
- Department of Population Health and Reproduction, University of California, Davis, CA 95616.
| | - F S Lima
- Department of Population Health and Reproduction, University of California, Davis, CA 95616.
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Bausewein M, Mansfeld R, Doherr MG, Harms J, Sorge US. Sensitivity and Specificity for the Detection of Clinical Mastitis by Automatic Milking Systems in Bavarian Dairy Herds. Animals (Basel) 2022; 12:ani12162131. [PMID: 36009724 PMCID: PMC9405299 DOI: 10.3390/ani12162131] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2022] [Revised: 08/11/2022] [Accepted: 08/14/2022] [Indexed: 11/20/2022] Open
Abstract
In automatic milking systems (AMSs), the detection of clinical mastitis (CM) and the subsequent separation of abnormal milk should be reliably performed by commercial AMSs. Therefore, the objectives of this cross-sectional study were (1) to determine the sensitivity (SN) and specificity (SP) of CM detection of AMS by the four most common manufacturers in Bavarian dairy farms, and (2) to identify routinely collected cow data (AMS and monthly test day data of the regional Dairy Herd Improvement Association (DHIA)) that could improve the SN and SP of clinical mastitis detection. Bavarian dairy farms with AMS from the manufacturers DeLaval, GEA Farm Technologies, Lely, and Lemmer-Fullwood were recruited with the aim of sampling at least 40 cows with clinical mastitis per AMS manufacturer in addition to clinically healthy ones. During a single farm visit, cow-level milking information was first electronically extracted from each AMS and then all lactating cows examined for their udder health status in the barn. Clinical mastitis was defined as at least the presence of visibly abnormal milk. In addition, available DHIA test results from the previous six months were collected. None of the manufacturers provided a definition for clinical mastitis (i.e., visually abnormal milk), therefore, the SN and SP of AMS warning lists for udder health were assessed for each manufacturer individually, based on the clinical evaluation results. Generalized linear mixed models (GLMMs) with herd as random effect were used to determine the potential influence of routinely recorded parameters on SN and SP. A total of 7411 cows on 114 farms were assessed; of these, 7096 cows could be matched to AMS data and were included in the analysis. The prevalence of clinical mastitis was 3.4% (239 cows). When considering the 95% confidence interval (95% CI), all but one manufacturer achieved the minimum SN limit of >80%: DeLaval (SN: 61.4% (95% CI: 49.0%−72.8%)), GEA (75.9% (62.4%−86.5%)), Lely (78.2% (67.4%−86.8%)), and Lemmer-Fullwood (67.6% (50.2%−82.0%)). However, none of the evaluated AMSs achieved the minimum SP limit of 99%: DeLaval (SP: 89.3% (95% CI: 87.7%−90.7%)), GEA (79.2% (77.1%−81.2%)), Lely (86.2% (84.6%−87.7%)), and Lemmer-Fullwood (92.2% (90.8%−93.5%)). All AMS manufacturers’ robots showed an association of SP with cow classification based on somatic cell count (SCC) measurement from the last two DHIA test results: cows that were above the threshold of 100,000 cells/mL for subclinical mastitis on both test days had lower chances of being classified as healthy by the AMS compared to cows that were below the threshold. In conclusion, the detection of clinical mastitis cases was satisfactory across AMS manufacturers. However, the low SP will lead to unnecessarily discarded milk and increased workload to assess potentially false-positive mastitis cases. Based on the results of our study, farmers must evaluate all available data (test day data, AMS data, and daily assessment of their cows in the barn) to make decisions about individual cows and to ultimately ensure animal welfare, food quality, and the economic viability of their farm.
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Affiliation(s)
- Mathias Bausewein
- Bavarian Animal Health Services, 85586 Poing-Grub, Germany
- Clinic for Ruminants with Ambulatory and Herd Health Services, Centre for Clinical Veterinary Medicine, LMU Munich, 85764 Oberschleissheim, Germany
- Correspondence:
| | - Rolf Mansfeld
- Clinic for Ruminants with Ambulatory and Herd Health Services, Centre for Clinical Veterinary Medicine, LMU Munich, 85764 Oberschleissheim, Germany
| | - Marcus G. Doherr
- Institute for Veterinary Epidemiology and Biostatistics, Freie Universität, 14163 Berlin, Germany
| | - Jan Harms
- Institute for Agricultural Engineering and Animal Husbandry, Bavarian State Research Centre for Agriculture, 85586 Poing-Grub, Germany
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Association between Udder and Quarter Level Indicators and Milk Somatic Cell Count in Automatic Milking Systems. Animals (Basel) 2021; 11:ani11123485. [PMID: 34944260 PMCID: PMC8698143 DOI: 10.3390/ani11123485] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2021] [Revised: 11/30/2021] [Accepted: 12/04/2021] [Indexed: 11/17/2022] Open
Abstract
Simple Summary In dairy cattle herds milked by automatic systems, the absence of a human milker originates the need for control systems to monitor the milking process and cow conditions. Modern milking robots are equipped with a lot of sensors that, at each milking (2.5–3 times a day), record data on milk yield and quality, milking efficiency, cow welfare, and health with particular focus to udder conditions. Mastitis is one of the most frequent and serious diseases of dairy cow that negatively affects milk quality and yield, reduces animal welfare, and often implies the use of antimicrobial drugs. At the moment, the alerting systems for mastitis risk is generally based on monitoring milk electrical conductivity, color, and/or temperature, but these indicators have limited reliability. Other information gathered by automatic sensors, already implemented in commercial robots, could be useful to early detect mastitis. Using a multivariate approach, our study showed that the deviations over time of milk electrical conductivity, milk yield, and milk flow of single quarters in comparison with the whole udder are potential indicators, alone or in combination, for altered udder conditions. The results could be useful for the development of new algorithms more effective in the early detection of mastitis. Abstract Automatic Milking Systems (AMS) record a lot of information, at udder and quarter level, which can be useful for improving the early detection of altered udder health conditions. A total of 752,000 records from 1003 lactating cows milked with two types of AMS in four farms were processed with the aim of identifying new indicators, starting from the variables provided by the AMS, useful to predict the risk of high milk somatic cell count (SCC). Considering the temporal pattern, the quarter vs. udder percentage difference in milk electrical conductivity showed an increase in the fourteen days preceding an official milk control higher than 300,000 SCC/mL. Similarly, deviations over time in quarter vs. udder milk yield, average milk flow, and milking time emerged as potential indicators for high SCC. The Logistic Analysis showed that Milk Production Rate (kg/h) and the within-cow within-milking percentage variations of single quarter vs. udder milk electrical conductivity, milk yield, and average milk flow are all risk factors for high milk SCC. The result suggests that these variables, alone or in combination, and their progression over time could be used to improve the early prediction of risk situations for udder health in AMS milked herds.
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van den Borne BHP, van Grinsven NJM, Hogeveen H. Trends in somatic cell count deteriorations in Dutch dairy herds transitioning to an automatic milking system. J Dairy Sci 2021; 104:6039-6050. [PMID: 33612244 DOI: 10.3168/jds.2020-19589] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2020] [Accepted: 11/12/2020] [Indexed: 11/19/2022]
Abstract
Udder health is at risk when herds transition from a conventional milking system (CMS) to an automatic milking system (AMS). Somatic cell counts (SCC) are generally elevated for several months following a transition. However, such observations were made in studies conducted in the early 2000s. Technical improvements to AMS have likely been made since then, and farm management may have improved, learning from past experiences. This longitudinal observational study quantified national trends in SCC deteriorations in dairy herds that transitioned from a CMS to an AMS. Census data from the Dutch test day recording was used to determine these trends. It consisted of all cow-level SCC measurements conducted in the Netherlands from January 1, 2007 to December 31, 2019. Three udder health indicators, including the natural logarithm of the yield-corrected bulk-milk SCC, the proportion of cows having a composite SCC ≥200,000 cells/mL, and the proportion of cows having a new elevated SCC, were evaluated using multivariable population-averaged generalized estimation equations. Predicted values resulting from these statistical models were interpreted to determine trends in SCC deteriorations from 12 mo before and 12 mo after the transition to an AMS. Decreasing SCC deteriorations were observed during the study period for all 3 udder health indicators. Udder health deteriorations around the transition to an AMS were still observed, but they decreased in magnitude over the course of the study period. Bulk-milk SCC deteriorations were, for instance, 2.5 times lower in 2019 compared with those observed in 2007. Therefore, the effect of transitioning to an AMS on udder health became less severe in more recent years. However, deteriorations in the proportion of new SCC elevations were still evident toward the end of the study period. Efforts to lower udder health deteriorations in herds that transition to an AMS should therefore be continued and should intensify on factors lowering the proportion of cows having a new elevated SCC.
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Affiliation(s)
- Bart H P van den Borne
- Business Economics Group, Wageningen University and Research, P.O. Box 8130, 6700 EW Wageningen, the Netherlands.
| | - Niek J M van Grinsven
- Business Economics Group, Wageningen University and Research, P.O. Box 8130, 6700 EW Wageningen, the Netherlands
| | - Henk Hogeveen
- Business Economics Group, Wageningen University and Research, P.O. Box 8130, 6700 EW Wageningen, the Netherlands
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Challenges and Tendencies of Automatic Milking Systems (AMS): A 20-Years Systematic Review of Literature and Patents. Animals (Basel) 2021; 11:ani11020356. [PMID: 33572673 PMCID: PMC7912558 DOI: 10.3390/ani11020356] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2020] [Revised: 01/20/2021] [Accepted: 01/28/2021] [Indexed: 01/16/2023] Open
Abstract
Over the last two decades, the dairy industry has adopted the use of Automatic Milking Systems (AMS). AMS have the potential to increase the effectiveness of the milking process and sustain animal welfare. This study assessed the state of the art of research activities on AMS through a systematic review of scientific and industrial research. The papers and patents of the last 20 years (2000-2019) were analysed to assess the research tendencies. The words appearing in title, abstract and keywords of a total of 802 documents were processed with the text mining tool. Four clusters were identified (Components, Technology, Process and Animal). For each cluster, the words frequency analysis enabled us to identify the research tendencies and gaps. The results showed that focuses of the scientific and industrial research areas complementary, with scientific papers mainly dealing with topics related to animal and process, and patents giving priority to technology and components. Both scientific and industrial research converged on some crucial objectives, such as animal welfare, process sustainability and technological development. Despite the increasing interest in animal welfare, this review highlighted that further progress is needed to meet the consumers' demand. Moreover, milk yield is still regarded as more valuable compared to milk quality. Therefore, additional effort is necessary on the latter. At the process level, some gaps have been found related to cleaning operations, necessary to improve milk quality and animal health. The use of farm data and their incorporation on herd decision support systems (DSS) appeared optimal. The results presented in this review may be used as an overall assessment useful to address future research.
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